data_5JY9 # _model_server_result.job_id bxvvwzUnN7ywuLu4aJPUqw _model_server_result.datetime_utc '2024-11-26 02:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5JY9 # _exptl.entry_id 5JY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.02 _cell.angle_gamma 90 _cell.entry_id 5JY9 _cell.length_a 56.392 _cell.length_b 145.351 _cell.length_c 58.437 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 420 A GLU 420 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc2 C FE FE2 . A FE2 501 1_555 E OXT ACT . A ACT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 B OE2 GLU 284 B GLU 284 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 B OE2 GLU 420 B GLU 420 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 F FE FE2 . B FE2 501 1_555 G O3 SO4 . B SO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc6 F FE FE2 . B FE2 501 1_555 G O4 SO4 . B SO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 F FE FE2 . B FE2 501 1_555 J O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 F FE FE2 . B FE2 501 1_555 J O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JY9 _atom_sites.fract_transf_matrix[1][1] 0.017733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 501 1 FE2 FE2 . D 3 ACT A 1 502 2 ACT ACT . E 3 ACT A 1 503 3 ACT ACT . F 2 FE2 B 1 501 2 FE2 FE2 . G 4 SO4 B 1 502 1 SO4 SO4 . H 3 ACT B 1 503 1 ACT ACT . I 5 HOH A 1 601 99 HOH HOH . I 5 HOH A 2 602 131 HOH HOH . I 5 HOH A 3 603 77 HOH HOH . I 5 HOH A 4 604 14 HOH HOH . I 5 HOH A 5 605 63 HOH HOH . I 5 HOH A 6 606 68 HOH HOH . I 5 HOH A 7 607 28 HOH HOH . I 5 HOH A 8 608 22 HOH HOH . I 5 HOH A 9 609 111 HOH HOH . I 5 HOH A 10 610 128 HOH HOH . I 5 HOH A 11 611 50 HOH HOH . I 5 HOH A 12 612 143 HOH HOH . I 5 HOH A 13 613 61 HOH HOH . I 5 HOH A 14 614 35 HOH HOH . I 5 HOH A 15 615 70 HOH HOH . I 5 HOH A 16 616 21 HOH HOH . I 5 HOH A 17 617 8 HOH HOH . I 5 HOH A 18 618 31 HOH HOH . I 5 HOH A 19 619 129 HOH HOH . I 5 HOH A 20 620 57 HOH HOH . I 5 HOH A 21 621 24 HOH HOH . I 5 HOH A 22 622 53 HOH HOH . I 5 HOH A 23 623 18 HOH HOH . I 5 HOH A 24 624 105 HOH HOH . I 5 HOH A 25 625 25 HOH HOH . I 5 HOH A 26 626 113 HOH HOH . I 5 HOH A 27 627 106 HOH HOH . I 5 HOH A 28 628 58 HOH HOH . I 5 HOH A 29 629 75 HOH HOH . I 5 HOH A 30 630 62 HOH HOH . I 5 HOH A 31 631 48 HOH HOH . I 5 HOH A 32 632 83 HOH HOH . I 5 HOH A 33 633 89 HOH HOH . I 5 HOH A 34 634 74 HOH HOH . I 5 HOH A 35 635 98 HOH HOH . I 5 HOH A 36 636 78 HOH HOH . I 5 HOH A 37 637 72 HOH HOH . I 5 HOH A 38 638 5 HOH HOH . I 5 HOH A 39 639 137 HOH HOH . I 5 HOH A 40 640 123 HOH HOH . I 5 HOH A 41 641 11 HOH HOH . I 5 HOH A 42 642 146 HOH HOH . I 5 HOH A 43 643 10 HOH HOH . I 5 HOH A 44 644 121 HOH HOH . I 5 HOH A 45 645 126 HOH HOH . I 5 HOH A 46 646 87 HOH HOH . I 5 HOH A 47 647 52 HOH HOH . I 5 HOH A 48 648 85 HOH HOH . I 5 HOH A 49 649 130 HOH HOH . I 5 HOH A 50 650 95 HOH HOH . I 5 HOH A 51 651 7 HOH HOH . I 5 HOH A 52 652 79 HOH HOH . I 5 HOH A 53 653 135 HOH HOH . I 5 HOH A 54 654 86 HOH HOH . I 5 HOH A 55 655 47 HOH HOH . I 5 HOH A 56 656 139 HOH HOH . I 5 HOH A 57 657 125 HOH HOH . I 5 HOH A 58 658 15 HOH HOH . I 5 HOH A 59 659 12 HOH HOH . I 5 HOH A 60 660 112 HOH HOH . I 5 HOH A 61 661 136 HOH HOH . I 5 HOH A 62 662 19 HOH HOH . I 5 HOH A 63 663 69 HOH HOH . I 5 HOH A 64 664 84 HOH HOH . I 5 HOH A 65 665 55 HOH HOH . I 5 HOH A 66 666 110 HOH HOH . I 5 HOH A 67 667 154 HOH HOH . I 5 HOH A 68 668 150 HOH HOH . I 5 HOH A 69 669 56 HOH HOH . I 5 HOH A 70 670 138 HOH HOH . I 5 HOH A 71 671 155 HOH HOH . I 5 HOH A 72 672 108 HOH HOH . I 5 HOH A 73 673 142 HOH HOH . I 5 HOH A 74 674 122 HOH HOH . I 5 HOH A 75 675 153 HOH HOH . I 5 HOH A 76 676 64 HOH HOH . I 5 HOH A 77 677 134 HOH HOH . J 5 HOH B 1 601 127 HOH HOH . J 5 HOH B 2 602 4 HOH HOH . J 5 HOH B 3 603 120 HOH HOH . J 5 HOH B 4 604 82 HOH HOH . J 5 HOH B 5 605 76 HOH HOH . J 5 HOH B 6 606 3 HOH HOH . J 5 HOH B 7 607 71 HOH HOH . J 5 HOH B 8 608 23 HOH HOH . J 5 HOH B 9 609 90 HOH HOH . J 5 HOH B 10 610 103 HOH HOH . J 5 HOH B 11 611 40 HOH HOH . J 5 HOH B 12 612 43 HOH HOH . J 5 HOH B 13 613 65 HOH HOH . J 5 HOH B 14 614 66 HOH HOH . J 5 HOH B 15 615 6 HOH HOH . J 5 HOH B 16 616 59 HOH HOH . J 5 HOH B 17 617 38 HOH HOH . J 5 HOH B 18 618 17 HOH HOH . J 5 HOH B 19 619 107 HOH HOH . J 5 HOH B 20 620 102 HOH HOH . J 5 HOH B 21 621 94 HOH HOH . J 5 HOH B 22 622 13 HOH HOH . J 5 HOH B 23 623 117 HOH HOH . J 5 HOH B 24 624 46 HOH HOH . J 5 HOH B 25 625 132 HOH HOH . J 5 HOH B 26 626 34 HOH HOH . J 5 HOH B 27 627 67 HOH HOH . J 5 HOH B 28 628 60 HOH HOH . J 5 HOH B 29 629 16 HOH HOH . J 5 HOH B 30 630 32 HOH HOH . J 5 HOH B 31 631 41 HOH HOH . J 5 HOH B 32 632 114 HOH HOH . J 5 HOH B 33 633 42 HOH HOH . J 5 HOH B 34 634 73 HOH HOH . J 5 HOH B 35 635 39 HOH HOH . J 5 HOH B 36 636 51 HOH HOH . J 5 HOH B 37 637 101 HOH HOH . J 5 HOH B 38 638 44 HOH HOH . J 5 HOH B 39 639 119 HOH HOH . J 5 HOH B 40 640 36 HOH HOH . J 5 HOH B 41 641 26 HOH HOH . J 5 HOH B 42 642 92 HOH HOH . J 5 HOH B 43 643 100 HOH HOH . J 5 HOH B 44 644 80 HOH HOH . J 5 HOH B 45 645 29 HOH HOH . J 5 HOH B 46 646 116 HOH HOH . J 5 HOH B 47 647 96 HOH HOH . J 5 HOH B 48 648 20 HOH HOH . J 5 HOH B 49 649 97 HOH HOH . J 5 HOH B 50 650 30 HOH HOH . J 5 HOH B 51 651 9 HOH HOH . J 5 HOH B 52 652 81 HOH HOH . J 5 HOH B 53 653 45 HOH HOH . J 5 HOH B 54 654 37 HOH HOH . J 5 HOH B 55 655 109 HOH HOH . J 5 HOH B 56 656 27 HOH HOH . J 5 HOH B 57 657 133 HOH HOH . J 5 HOH B 58 658 88 HOH HOH . J 5 HOH B 59 659 49 HOH HOH . J 5 HOH B 60 660 33 HOH HOH . J 5 HOH B 61 661 140 HOH HOH . J 5 HOH B 62 662 124 HOH HOH . J 5 HOH B 63 663 145 HOH HOH . J 5 HOH B 64 664 151 HOH HOH . J 5 HOH B 65 665 118 HOH HOH . J 5 HOH B 66 666 152 HOH HOH . J 5 HOH B 67 667 91 HOH HOH . J 5 HOH B 68 668 144 HOH HOH . J 5 HOH B 69 669 148 HOH HOH . J 5 HOH B 70 670 141 HOH HOH . J 5 HOH B 71 671 147 HOH HOH . J 5 HOH B 72 672 54 HOH HOH . J 5 HOH B 73 673 115 HOH HOH . J 5 HOH B 74 674 104 HOH HOH . J 5 HOH B 75 675 93 HOH HOH . J 5 HOH B 76 676 149 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.953 _atom_site.Cartn_y -26.072 _atom_site.Cartn_z 52.353 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #