data_5JYL # _model_server_result.job_id enz40TXKoENp95vbpOhqWw _model_server_result.datetime_utc '2024-11-05 00:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5JYL # _exptl.entry_id 5JYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.89 _cell.angle_gamma 90 _cell.entry_id 5JYL _cell.length_a 66.57 _cell.length_b 49.41 _cell.length_c 111.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,I,J 1 1 C,D,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? disulf ? disulf2 B SG CYS 161 B CYS 161 1_555 B SG CYS 226 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf4 D SG CYS 161 D CYS 161 1_555 D SG CYS 226 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5JYL _atom_sites.fract_transf_matrix[1][1] 0.015022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL B 1 301 1 GOL GOL . F 4 PO4 B 1 302 10 PO4 PO4 . G 5 CL B 1 303 21 CL CL . H 5 CL D 1 301 20 CL CL . I 6 HOH A 1 201 74 HOH HOH . I 6 HOH A 2 202 82 HOH HOH . I 6 HOH A 3 203 51 HOH HOH . I 6 HOH A 4 204 50 HOH HOH . I 6 HOH A 5 205 49 HOH HOH . I 6 HOH A 6 206 38 HOH HOH . I 6 HOH A 7 207 40 HOH HOH . I 6 HOH A 8 208 5 HOH HOH . I 6 HOH A 9 209 84 HOH HOH . I 6 HOH A 10 210 48 HOH HOH . I 6 HOH A 11 211 71 HOH HOH . I 6 HOH A 12 212 15 HOH HOH . I 6 HOH A 13 213 90 HOH HOH . I 6 HOH A 14 214 7 HOH HOH . I 6 HOH A 15 215 86 HOH HOH . J 6 HOH B 1 401 72 HOH HOH . J 6 HOH B 2 402 16 HOH HOH . J 6 HOH B 3 403 69 HOH HOH . J 6 HOH B 4 404 22 HOH HOH . J 6 HOH B 5 405 52 HOH HOH . J 6 HOH B 6 406 88 HOH HOH . J 6 HOH B 7 407 23 HOH HOH . J 6 HOH B 8 408 60 HOH HOH . J 6 HOH B 9 409 64 HOH HOH . J 6 HOH B 10 410 53 HOH HOH . J 6 HOH B 11 411 45 HOH HOH . J 6 HOH B 12 412 9 HOH HOH . J 6 HOH B 13 413 67 HOH HOH . J 6 HOH B 14 414 81 HOH HOH . J 6 HOH B 15 415 10 HOH HOH . J 6 HOH B 16 416 6 HOH HOH . J 6 HOH B 17 417 21 HOH HOH . J 6 HOH B 18 418 62 HOH HOH . J 6 HOH B 19 419 31 HOH HOH . J 6 HOH B 20 420 42 HOH HOH . J 6 HOH B 21 421 93 HOH HOH . J 6 HOH B 22 422 34 HOH HOH . J 6 HOH B 23 423 20 HOH HOH . J 6 HOH B 24 424 70 HOH HOH . J 6 HOH B 25 425 80 HOH HOH . J 6 HOH B 26 426 89 HOH HOH . J 6 HOH B 27 427 55 HOH HOH . J 6 HOH B 28 428 39 HOH HOH . J 6 HOH B 29 429 68 HOH HOH . J 6 HOH B 30 430 44 HOH HOH . J 6 HOH B 31 431 8 HOH HOH . J 6 HOH B 32 432 56 HOH HOH . J 6 HOH B 33 433 94 HOH HOH . J 6 HOH B 34 434 87 HOH HOH . J 6 HOH B 35 435 92 HOH HOH . J 6 HOH B 36 436 19 HOH HOH . J 6 HOH B 37 437 41 HOH HOH . J 6 HOH B 38 438 43 HOH HOH . K 6 HOH C 1 201 47 HOH HOH . K 6 HOH C 2 202 4 HOH HOH . K 6 HOH C 3 203 95 HOH HOH . K 6 HOH C 4 204 66 HOH HOH . K 6 HOH C 5 205 46 HOH HOH . K 6 HOH C 6 206 91 HOH HOH . K 6 HOH C 7 207 79 HOH HOH . K 6 HOH C 8 208 14 HOH HOH . K 6 HOH C 9 209 76 HOH HOH . K 6 HOH C 10 210 83 HOH HOH . K 6 HOH C 11 211 2 HOH HOH . K 6 HOH C 12 212 85 HOH HOH . L 6 HOH D 1 401 65 HOH HOH . L 6 HOH D 2 402 61 HOH HOH . L 6 HOH D 3 403 77 HOH HOH . L 6 HOH D 4 404 26 HOH HOH . L 6 HOH D 5 405 58 HOH HOH . L 6 HOH D 6 406 29 HOH HOH . L 6 HOH D 7 407 75 HOH HOH . L 6 HOH D 8 408 36 HOH HOH . L 6 HOH D 9 409 32 HOH HOH . L 6 HOH D 10 410 37 HOH HOH . L 6 HOH D 11 411 78 HOH HOH . L 6 HOH D 12 412 63 HOH HOH . L 6 HOH D 13 413 33 HOH HOH . L 6 HOH D 14 414 35 HOH HOH . L 6 HOH D 15 415 25 HOH HOH . L 6 HOH D 16 416 30 HOH HOH . L 6 HOH D 17 417 59 HOH HOH . L 6 HOH D 18 418 73 HOH HOH . L 6 HOH D 19 419 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 0.059 -12.438 -45.478 1 54.1 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . E 3 -1.336 -12.186 -45.726 1 49.34 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . E 3 0.813 -11.155 -45.088 1 53.27 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . E 3 1.676 -10.709 -46.154 1 51.32 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . E 3 1.656 -11.376 -43.824 1 53.73 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . E 3 0.954 -10.92 -42.658 1 50.49 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #