data_5JYP # _model_server_result.job_id H7ECZORX9aJF10S17Gz2yQ _model_server_result.datetime_utc '2024-12-26 23:13:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5JYP # _exptl.entry_id 5JYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.654 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-phenyl-~{N}-[5-[(1~{S},3~{S})-3-[5-(2-phenylethanoylamino)-1,3,4-thiadiazol-2-yl]cyclohexyl]-1,3,4-thiadiazol-2-yl]ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JYP _cell.length_a 139.556 _cell.length_b 139.556 _cell.length_c 156.613 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 156.613 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 156.613 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H26 N6 O2 S2' _chem_comp.formula_weight 518.654 _chem_comp.id ZBS _chem_comp.mon_nstd_flag . _chem_comp.name 2-phenyl-~{N}-[5-[(1~{S},3~{S})-3-[5-(2-phenylethanoylamino)-1,3,4-thiadiazol-2-yl]cyclohexyl]-1,3,4-thiadiazol-2-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C03 ZBS doub 376 n y C04 C05 ZBS sing 377 n y C03 C02 ZBS sing 378 n y N03 N02 ZBS sing 379 n y N03 C09 ZBS doub 380 n y N01 C09 ZBS sing 381 n n N01 C08 ZBS sing 382 n n C07 C05 ZBS sing 383 n n C07 C08 ZBS sing 384 n n C05 C06 ZBS doub 385 n y C02 C01 ZBS doub 386 n y N02 C10 ZBS doub 387 n y C09 S01 ZBS sing 388 n y C06 C01 ZBS sing 389 n y C08 O01 ZBS doub 390 n n C13 C12 ZBS sing 391 n n C13 C14 ZBS sing 392 n n C10 S01 ZBS sing 393 n y C10 C11 ZBS sing 394 n n C12 C11 ZBS sing 395 n n C14 C15 ZBS sing 396 n n C15 C16 ZBS sing 397 n n C15 C17 ZBS sing 398 n n C11 C16 ZBS sing 399 n n O02 C19 ZBS doub 400 n n S02 C17 ZBS sing 401 n y S02 C18 ZBS sing 402 n y C17 N05 ZBS doub 403 n y C22 C23 ZBS doub 404 n y C22 C21 ZBS sing 405 n y C23 C24 ZBS sing 406 n y C19 C20 ZBS sing 407 n n C19 N06 ZBS sing 408 n n C20 C21 ZBS sing 409 n n C18 N06 ZBS sing 410 n n C18 N04 ZBS doub 411 n y N05 N04 ZBS sing 412 n y C21 C26 ZBS doub 413 n y C24 C25 ZBS doub 414 n y C26 C25 ZBS sing 415 n y C01 H1 ZBS sing 416 n n C02 H2 ZBS sing 417 n n C03 H3 ZBS sing 418 n n C04 H4 ZBS sing 419 n n C06 H5 ZBS sing 420 n n C07 H6 ZBS sing 421 n n C07 H7 ZBS sing 422 n n C11 H8 ZBS sing 423 n n C12 H9 ZBS sing 424 n n C12 H10 ZBS sing 425 n n C13 H11 ZBS sing 426 n n C13 H12 ZBS sing 427 n n C14 H13 ZBS sing 428 n n C14 H14 ZBS sing 429 n n C15 H15 ZBS sing 430 n n C16 H16 ZBS sing 431 n n C16 H17 ZBS sing 432 n n C20 H18 ZBS sing 433 n n C20 H19 ZBS sing 434 n n C22 H20 ZBS sing 435 n n C23 H21 ZBS sing 436 n n C24 H22 ZBS sing 437 n n C25 H23 ZBS sing 438 n n C26 H24 ZBS sing 439 n n N01 H25 ZBS sing 440 n n N06 H26 ZBS sing 441 n n # _atom_sites.entry_id 5JYP _atom_sites.fract_transf_matrix[1][1] 0.007166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZBS A 1 601 1 ZBS CBS . C 3 HOH A 1 701 11 HOH HOH . C 3 HOH A 2 702 3 HOH HOH . C 3 HOH A 3 703 12 HOH HOH . C 3 HOH A 4 704 8 HOH HOH . C 3 HOH A 5 705 6 HOH HOH . C 3 HOH A 6 706 15 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 14 HOH HOH . C 3 HOH A 9 709 4 HOH HOH . C 3 HOH A 10 710 1 HOH HOH . C 3 HOH A 11 711 2 HOH HOH . C 3 HOH A 12 712 10 HOH HOH . C 3 HOH A 13 713 16 HOH HOH . C 3 HOH A 14 714 13 HOH HOH . C 3 HOH A 15 715 9 HOH HOH . C 3 HOH A 16 716 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 ZBS . . . B 2 -0.292 -5.26 76.75 0.44 83.08 ? C01 ZBS 601 A 1 HETATM 2 C C02 ZBS . . . B 2 -1.487 -4.913 76.142 0.44 82.38 ? C02 ZBS 601 A 1 HETATM 3 C C03 ZBS . . . B 2 -2.257 -5.89 75.519 0.44 82.83 ? C03 ZBS 601 A 1 HETATM 4 C C04 ZBS . . . B 2 -1.836 -7.215 75.5 0.44 82.38 ? C04 ZBS 601 A 1 HETATM 5 C C05 ZBS . . . B 2 -0.639 -7.568 76.107 0.44 82.68 ? C05 ZBS 601 A 1 HETATM 6 C C06 ZBS . . . B 2 0.129 -6.586 76.73 0.44 83.54 ? C06 ZBS 601 A 1 HETATM 7 C C07 ZBS . . . B 2 -0.16 -9.012 76.098 0.44 81.16 ? C07 ZBS 601 A 1 HETATM 8 C C08 ZBS . . . B 2 1.21 -9.146 76.743 0.44 81.04 ? C08 ZBS 601 A 1 HETATM 9 C C09 ZBS . . . B 2 3.709 -8.91 76.476 0.44 76.64 ? C09 ZBS 601 A 1 HETATM 10 C C10 ZBS . . . B 2 5.93 -9.035 77.717 0.44 73.4 ? C10 ZBS 601 A 1 HETATM 11 C C11 ZBS . . . B 2 7.097 -9.172 78.692 0.44 71.38 ? C11 ZBS 601 A 1 HETATM 12 C C12 ZBS . . . B 2 8.348 -9.609 77.945 0.44 71.6 ? C12 ZBS 601 A 1 HETATM 13 C C13 ZBS . . . B 2 9.031 -8.49 77.179 0.44 71.92 ? C13 ZBS 601 A 1 HETATM 14 C C14 ZBS . . . B 2 9.316 -7.285 78.039 0.44 71.85 ? C14 ZBS 601 A 1 HETATM 15 C C15 ZBS . . . B 2 8.021 -6.793 78.638 0.44 73.15 ? C15 ZBS 601 A 1 HETATM 16 C C16 ZBS . . . B 2 7.291 -7.862 79.441 0.44 73.17 ? C16 ZBS 601 A 1 HETATM 17 C C17 ZBS . . . B 2 8.33 -5.599 79.532 0.44 73.77 ? C17 ZBS 601 A 1 HETATM 18 C C18 ZBS . . . B 2 8.614 -3.293 80.638 0.44 77.47 ? C18 ZBS 601 A 1 HETATM 19 C C19 ZBS . . . B 2 8.957 -0.896 80.075 0.44 81.25 ? C19 ZBS 601 A 1 HETATM 20 C C20 ZBS . . . B 2 8.91 0.558 80.522 0.44 80.95 ? C20 ZBS 601 A 1 HETATM 21 C C21 ZBS . . . B 2 7.466 0.939 80.788 0.44 82.56 ? C21 ZBS 601 A 1 HETATM 22 C C22 ZBS . . . B 2 6.543 0.905 79.744 0.44 84.37 ? C22 ZBS 601 A 1 HETATM 23 C C23 ZBS . . . B 2 5.213 1.235 79.966 0.44 82.68 ? C23 ZBS 601 A 1 HETATM 24 C C24 ZBS . . . B 2 4.808 1.598 81.241 0.44 82.46 ? C24 ZBS 601 A 1 HETATM 25 C C25 ZBS . . . B 2 5.724 1.628 82.287 0.44 82.35 ? C25 ZBS 601 A 1 HETATM 26 C C26 ZBS . . . B 2 7.053 1.296 82.064 0.44 81.87 ? C26 ZBS 601 A 1 HETATM 27 N N01 ZBS . . . B 2 2.372 -8.85 75.975 0.44 78.22 ? N01 ZBS 601 A 1 HETATM 28 N N02 ZBS . . . B 2 5.995 -8.761 76.4 0.44 73.14 ? N02 ZBS 601 A 1 HETATM 29 N N03 ZBS . . . B 2 4.816 -8.687 75.744 0.44 74.28 ? N03 ZBS 601 A 1 HETATM 30 N N04 ZBS . . . B 2 9.075 -4.354 81.329 0.44 74.63 ? N04 ZBS 601 A 1 HETATM 31 N N05 ZBS . . . B 2 8.928 -5.567 80.738 0.44 73.23 ? N05 ZBS 601 A 1 HETATM 32 N N06 ZBS . . . B 2 8.614 -1.919 81.003 0.44 78.39 ? N06 ZBS 601 A 1 HETATM 33 O O01 ZBS . . . B 2 1.301 -9.508 77.9 0.44 82.27 ? O01 ZBS 601 A 1 HETATM 34 O O02 ZBS . . . B 2 9.281 -1.186 78.937 0.44 82.28 ? O02 ZBS 601 A 1 HETATM 35 S S01 ZBS . . . B 2 4.265 -9.207 78.075 0.44 75.77 ? S01 ZBS 601 A 1 HETATM 36 S S02 ZBS . . . B 2 7.98 -3.967 79.196 0.44 79.7 ? S02 ZBS 601 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #