data_5JZ6
#
_model_server_result.job_id            pYc4a1hak1YIXPnIRCq_ug 
_model_server_result.datetime_utc      '2024-11-13 20:50:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":804}' 
#
_entry.id    5JZ6 
#
_exptl.entry_id    5JZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JZ6 
_cell.length_a            49.019 
_cell.length_b            70.641 
_cell.length_c            172.541 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc3 B MN MN . A MN 801 1_555 G O1A LMR . A LMR 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc4 B MN MN . A MN 801 1_555 G O1B LMR . A LMR 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc5 B MN MN . A MN 801 1_555 H O HOH . A HOH 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc6 B MN MN . A MN 801 1_555 H O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5JZ6 
_atom_sites.fract_transf_matrix[1][1]    0.0204 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014156 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 801 1 MN MN . 
C 3 GOL A 1 802 1 GOL GOL . 
D 3 GOL A 1 803 2 GOL GOL . 
E 3 GOL A 1 804 3 GOL GOL . 
F 3 GOL A 1 805 4 GOL GOL . 
G 4 LMR A 1 806 1 LMR LMR . 
H 5 HOH A 1 901 198 HOH HOH . 
H 5 HOH A 2 902 111 HOH HOH . 
H 5 HOH A 3 903 170 HOH HOH . 
H 5 HOH A 4 904 12 HOH HOH . 
H 5 HOH A 5 905 6 HOH HOH . 
H 5 HOH A 6 906 29 HOH HOH . 
H 5 HOH A 7 907 102 HOH HOH . 
H 5 HOH A 8 908 31 HOH HOH . 
H 5 HOH A 9 909 71 HOH HOH . 
H 5 HOH A 10 910 140 HOH HOH . 
H 5 HOH A 11 911 19 HOH HOH . 
H 5 HOH A 12 912 26 HOH HOH . 
H 5 HOH A 13 913 5 HOH HOH . 
H 5 HOH A 14 914 117 HOH HOH . 
H 5 HOH A 15 915 8 HOH HOH . 
H 5 HOH A 16 916 91 HOH HOH . 
H 5 HOH A 17 917 14 HOH HOH . 
H 5 HOH A 18 918 115 HOH HOH . 
H 5 HOH A 19 919 30 HOH HOH . 
H 5 HOH A 20 920 142 HOH HOH . 
H 5 HOH A 21 921 130 HOH HOH . 
H 5 HOH A 22 922 192 HOH HOH . 
H 5 HOH A 23 923 77 HOH HOH . 
H 5 HOH A 24 924 121 HOH HOH . 
H 5 HOH A 25 925 60 HOH HOH . 
H 5 HOH A 26 926 13 HOH HOH . 
H 5 HOH A 27 927 109 HOH HOH . 
H 5 HOH A 28 928 122 HOH HOH . 
H 5 HOH A 29 929 34 HOH HOH . 
H 5 HOH A 30 930 54 HOH HOH . 
H 5 HOH A 31 931 88 HOH HOH . 
H 5 HOH A 32 932 33 HOH HOH . 
H 5 HOH A 33 933 3 HOH HOH . 
H 5 HOH A 34 934 55 HOH HOH . 
H 5 HOH A 35 935 74 HOH HOH . 
H 5 HOH A 36 936 45 HOH HOH . 
H 5 HOH A 37 937 145 HOH HOH . 
H 5 HOH A 38 938 42 HOH HOH . 
H 5 HOH A 39 939 94 HOH HOH . 
H 5 HOH A 40 940 80 HOH HOH . 
H 5 HOH A 41 941 4 HOH HOH . 
H 5 HOH A 42 942 110 HOH HOH . 
H 5 HOH A 43 943 47 HOH HOH . 
H 5 HOH A 44 944 25 HOH HOH . 
H 5 HOH A 45 945 79 HOH HOH . 
H 5 HOH A 46 946 101 HOH HOH . 
H 5 HOH A 47 947 63 HOH HOH . 
H 5 HOH A 48 948 136 HOH HOH . 
H 5 HOH A 49 949 149 HOH HOH . 
H 5 HOH A 50 950 89 HOH HOH . 
H 5 HOH A 51 951 9 HOH HOH . 
H 5 HOH A 52 952 98 HOH HOH . 
H 5 HOH A 53 953 56 HOH HOH . 
H 5 HOH A 54 954 62 HOH HOH . 
H 5 HOH A 55 955 27 HOH HOH . 
H 5 HOH A 56 956 162 HOH HOH . 
H 5 HOH A 57 957 105 HOH HOH . 
H 5 HOH A 58 958 118 HOH HOH . 
H 5 HOH A 59 959 46 HOH HOH . 
H 5 HOH A 60 960 90 HOH HOH . 
H 5 HOH A 61 961 131 HOH HOH . 
H 5 HOH A 62 962 66 HOH HOH . 
H 5 HOH A 63 963 70 HOH HOH . 
H 5 HOH A 64 964 16 HOH HOH . 
H 5 HOH A 65 965 21 HOH HOH . 
H 5 HOH A 66 966 125 HOH HOH . 
H 5 HOH A 67 967 182 HOH HOH . 
H 5 HOH A 68 968 11 HOH HOH . 
H 5 HOH A 69 969 65 HOH HOH . 
H 5 HOH A 70 970 129 HOH HOH . 
H 5 HOH A 71 971 157 HOH HOH . 
H 5 HOH A 72 972 193 HOH HOH . 
H 5 HOH A 73 973 93 HOH HOH . 
H 5 HOH A 74 974 18 HOH HOH . 
H 5 HOH A 75 975 119 HOH HOH . 
H 5 HOH A 76 976 69 HOH HOH . 
H 5 HOH A 77 977 1 HOH HOH . 
H 5 HOH A 78 978 35 HOH HOH . 
H 5 HOH A 79 979 72 HOH HOH . 
H 5 HOH A 80 980 169 HOH HOH . 
H 5 HOH A 81 981 144 HOH HOH . 
H 5 HOH A 82 982 194 HOH HOH . 
H 5 HOH A 83 983 154 HOH HOH . 
H 5 HOH A 84 984 10 HOH HOH . 
H 5 HOH A 85 985 135 HOH HOH . 
H 5 HOH A 86 986 39 HOH HOH . 
H 5 HOH A 87 987 67 HOH HOH . 
H 5 HOH A 88 988 41 HOH HOH . 
H 5 HOH A 89 989 24 HOH HOH . 
H 5 HOH A 90 990 183 HOH HOH . 
H 5 HOH A 91 991 174 HOH HOH . 
H 5 HOH A 92 992 165 HOH HOH . 
H 5 HOH A 93 993 134 HOH HOH . 
H 5 HOH A 94 994 75 HOH HOH . 
H 5 HOH A 95 995 166 HOH HOH . 
H 5 HOH A 96 996 208 HOH HOH . 
H 5 HOH A 97 997 179 HOH HOH . 
H 5 HOH A 98 998 28 HOH HOH . 
H 5 HOH A 99 999 38 HOH HOH . 
H 5 HOH A 100 1000 164 HOH HOH . 
H 5 HOH A 101 1001 123 HOH HOH . 
H 5 HOH A 102 1002 81 HOH HOH . 
H 5 HOH A 103 1003 213 HOH HOH . 
H 5 HOH A 104 1004 49 HOH HOH . 
H 5 HOH A 105 1005 159 HOH HOH . 
H 5 HOH A 106 1006 133 HOH HOH . 
H 5 HOH A 107 1007 43 HOH HOH . 
H 5 HOH A 108 1008 51 HOH HOH . 
H 5 HOH A 109 1009 76 HOH HOH . 
H 5 HOH A 110 1010 112 HOH HOH . 
H 5 HOH A 111 1011 37 HOH HOH . 
H 5 HOH A 112 1012 2 HOH HOH . 
H 5 HOH A 113 1013 104 HOH HOH . 
H 5 HOH A 114 1014 22 HOH HOH . 
H 5 HOH A 115 1015 64 HOH HOH . 
H 5 HOH A 116 1016 61 HOH HOH . 
H 5 HOH A 117 1017 68 HOH HOH . 
H 5 HOH A 118 1018 78 HOH HOH . 
H 5 HOH A 119 1019 73 HOH HOH . 
H 5 HOH A 120 1020 86 HOH HOH . 
H 5 HOH A 121 1021 52 HOH HOH . 
H 5 HOH A 122 1022 32 HOH HOH . 
H 5 HOH A 123 1023 116 HOH HOH . 
H 5 HOH A 124 1024 191 HOH HOH . 
H 5 HOH A 125 1025 156 HOH HOH . 
H 5 HOH A 126 1026 83 HOH HOH . 
H 5 HOH A 127 1027 203 HOH HOH . 
H 5 HOH A 128 1028 124 HOH HOH . 
H 5 HOH A 129 1029 108 HOH HOH . 
H 5 HOH A 130 1030 137 HOH HOH . 
H 5 HOH A 131 1031 84 HOH HOH . 
H 5 HOH A 132 1032 168 HOH HOH . 
H 5 HOH A 133 1033 196 HOH HOH . 
H 5 HOH A 134 1034 150 HOH HOH . 
H 5 HOH A 135 1035 197 HOH HOH . 
H 5 HOH A 136 1036 20 HOH HOH . 
H 5 HOH A 137 1037 82 HOH HOH . 
H 5 HOH A 138 1038 128 HOH HOH . 
H 5 HOH A 139 1039 199 HOH HOH . 
H 5 HOH A 140 1040 7 HOH HOH . 
H 5 HOH A 141 1041 99 HOH HOH . 
H 5 HOH A 142 1042 214 HOH HOH . 
H 5 HOH A 143 1043 96 HOH HOH . 
H 5 HOH A 144 1044 106 HOH HOH . 
H 5 HOH A 145 1045 126 HOH HOH . 
H 5 HOH A 146 1046 103 HOH HOH . 
H 5 HOH A 147 1047 148 HOH HOH . 
H 5 HOH A 148 1048 50 HOH HOH . 
H 5 HOH A 149 1049 17 HOH HOH . 
H 5 HOH A 150 1050 138 HOH HOH . 
H 5 HOH A 151 1051 97 HOH HOH . 
H 5 HOH A 152 1052 141 HOH HOH . 
H 5 HOH A 153 1053 87 HOH HOH . 
H 5 HOH A 154 1054 205 HOH HOH . 
H 5 HOH A 155 1055 189 HOH HOH . 
H 5 HOH A 156 1056 171 HOH HOH . 
H 5 HOH A 157 1057 23 HOH HOH . 
H 5 HOH A 158 1058 58 HOH HOH . 
H 5 HOH A 159 1059 113 HOH HOH . 
H 5 HOH A 160 1060 48 HOH HOH . 
H 5 HOH A 161 1061 151 HOH HOH . 
H 5 HOH A 162 1062 59 HOH HOH . 
H 5 HOH A 163 1063 210 HOH HOH . 
H 5 HOH A 164 1064 40 HOH HOH . 
H 5 HOH A 165 1065 180 HOH HOH . 
H 5 HOH A 166 1066 163 HOH HOH . 
H 5 HOH A 167 1067 175 HOH HOH . 
H 5 HOH A 168 1068 172 HOH HOH . 
H 5 HOH A 169 1069 200 HOH HOH . 
H 5 HOH A 170 1070 139 HOH HOH . 
H 5 HOH A 171 1071 195 HOH HOH . 
H 5 HOH A 172 1072 152 HOH HOH . 
H 5 HOH A 173 1073 100 HOH HOH . 
H 5 HOH A 174 1074 201 HOH HOH . 
H 5 HOH A 175 1075 57 HOH HOH . 
H 5 HOH A 176 1076 178 HOH HOH . 
H 5 HOH A 177 1077 190 HOH HOH . 
H 5 HOH A 178 1078 53 HOH HOH . 
H 5 HOH A 179 1079 167 HOH HOH . 
H 5 HOH A 180 1080 44 HOH HOH . 
H 5 HOH A 181 1081 202 HOH HOH . 
H 5 HOH A 182 1082 212 HOH HOH . 
H 5 HOH A 183 1083 143 HOH HOH . 
H 5 HOH A 184 1084 176 HOH HOH . 
H 5 HOH A 185 1085 158 HOH HOH . 
H 5 HOH A 186 1086 215 HOH HOH . 
H 5 HOH A 187 1087 132 HOH HOH . 
H 5 HOH A 188 1088 146 HOH HOH . 
H 5 HOH A 189 1089 127 HOH HOH . 
H 5 HOH A 190 1090 85 HOH HOH . 
H 5 HOH A 191 1091 185 HOH HOH . 
H 5 HOH A 192 1092 120 HOH HOH . 
H 5 HOH A 193 1093 209 HOH HOH . 
H 5 HOH A 194 1094 114 HOH HOH . 
H 5 HOH A 195 1095 155 HOH HOH . 
H 5 HOH A 196 1096 153 HOH HOH . 
H 5 HOH A 197 1097 211 HOH HOH . 
H 5 HOH A 198 1098 216 HOH HOH . 
H 5 HOH A 199 1099 107 HOH HOH . 
H 5 HOH A 200 1100 184 HOH HOH . 
H 5 HOH A 201 1101 92 HOH HOH . 
H 5 HOH A 202 1102 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -10.599 10.991 19.269 1 44.95 ? C1 GOL 804 A 1 
HETATM 2 O O1 GOL . . . E 3 -11.531 11.381 18.283 1 43.27 ? O1 GOL 804 A 1 
HETATM 3 C C2 GOL . . . E 3 -9.432 11.972 19.294 1 63.3 ? C2 GOL 804 A 1 
HETATM 4 O O2 GOL . . . E 3 -9.868 13.206 19.816 1 75.96 ? O2 GOL 804 A 1 
HETATM 5 C C3 GOL . . . E 3 -8.304 11.435 20.167 1 75.03 ? C3 GOL 804 A 1 
HETATM 6 O O3 GOL . . . E 3 -7.094 12.075 19.827 1 82.48 ? O3 GOL 804 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#