data_5JZ6 # _model_server_result.job_id OGDW8YDlSU-wPAaWxpyD6w _model_server_result.datetime_utc '2024-11-30 03:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 5JZ6 # _exptl.entry_id 5JZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JZ6 _cell.length_a 49.019 _cell.length_b 70.641 _cell.length_c 172.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc3 B MN MN . A MN 801 1_555 G O1A LMR . A LMR 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 B MN MN . A MN 801 1_555 G O1B LMR . A LMR 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc5 B MN MN . A MN 801 1_555 H O HOH . A HOH 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 B MN MN . A MN 801 1_555 H O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5JZ6 _atom_sites.fract_transf_matrix[1][1] 0.0204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 801 1 MN MN . C 3 GOL A 1 802 1 GOL GOL . D 3 GOL A 1 803 2 GOL GOL . E 3 GOL A 1 804 3 GOL GOL . F 3 GOL A 1 805 4 GOL GOL . G 4 LMR A 1 806 1 LMR LMR . H 5 HOH A 1 901 198 HOH HOH . H 5 HOH A 2 902 111 HOH HOH . H 5 HOH A 3 903 170 HOH HOH . H 5 HOH A 4 904 12 HOH HOH . H 5 HOH A 5 905 6 HOH HOH . H 5 HOH A 6 906 29 HOH HOH . H 5 HOH A 7 907 102 HOH HOH . H 5 HOH A 8 908 31 HOH HOH . H 5 HOH A 9 909 71 HOH HOH . H 5 HOH A 10 910 140 HOH HOH . H 5 HOH A 11 911 19 HOH HOH . H 5 HOH A 12 912 26 HOH HOH . H 5 HOH A 13 913 5 HOH HOH . H 5 HOH A 14 914 117 HOH HOH . H 5 HOH A 15 915 8 HOH HOH . H 5 HOH A 16 916 91 HOH HOH . H 5 HOH A 17 917 14 HOH HOH . H 5 HOH A 18 918 115 HOH HOH . H 5 HOH A 19 919 30 HOH HOH . H 5 HOH A 20 920 142 HOH HOH . H 5 HOH A 21 921 130 HOH HOH . H 5 HOH A 22 922 192 HOH HOH . H 5 HOH A 23 923 77 HOH HOH . H 5 HOH A 24 924 121 HOH HOH . H 5 HOH A 25 925 60 HOH HOH . H 5 HOH A 26 926 13 HOH HOH . H 5 HOH A 27 927 109 HOH HOH . H 5 HOH A 28 928 122 HOH HOH . H 5 HOH A 29 929 34 HOH HOH . H 5 HOH A 30 930 54 HOH HOH . H 5 HOH A 31 931 88 HOH HOH . H 5 HOH A 32 932 33 HOH HOH . H 5 HOH A 33 933 3 HOH HOH . H 5 HOH A 34 934 55 HOH HOH . H 5 HOH A 35 935 74 HOH HOH . H 5 HOH A 36 936 45 HOH HOH . H 5 HOH A 37 937 145 HOH HOH . H 5 HOH A 38 938 42 HOH HOH . H 5 HOH A 39 939 94 HOH HOH . H 5 HOH A 40 940 80 HOH HOH . H 5 HOH A 41 941 4 HOH HOH . H 5 HOH A 42 942 110 HOH HOH . H 5 HOH A 43 943 47 HOH HOH . H 5 HOH A 44 944 25 HOH HOH . H 5 HOH A 45 945 79 HOH HOH . H 5 HOH A 46 946 101 HOH HOH . H 5 HOH A 47 947 63 HOH HOH . H 5 HOH A 48 948 136 HOH HOH . H 5 HOH A 49 949 149 HOH HOH . H 5 HOH A 50 950 89 HOH HOH . H 5 HOH A 51 951 9 HOH HOH . H 5 HOH A 52 952 98 HOH HOH . H 5 HOH A 53 953 56 HOH HOH . H 5 HOH A 54 954 62 HOH HOH . H 5 HOH A 55 955 27 HOH HOH . H 5 HOH A 56 956 162 HOH HOH . H 5 HOH A 57 957 105 HOH HOH . H 5 HOH A 58 958 118 HOH HOH . H 5 HOH A 59 959 46 HOH HOH . H 5 HOH A 60 960 90 HOH HOH . H 5 HOH A 61 961 131 HOH HOH . H 5 HOH A 62 962 66 HOH HOH . H 5 HOH A 63 963 70 HOH HOH . H 5 HOH A 64 964 16 HOH HOH . H 5 HOH A 65 965 21 HOH HOH . H 5 HOH A 66 966 125 HOH HOH . H 5 HOH A 67 967 182 HOH HOH . H 5 HOH A 68 968 11 HOH HOH . H 5 HOH A 69 969 65 HOH HOH . H 5 HOH A 70 970 129 HOH HOH . H 5 HOH A 71 971 157 HOH HOH . H 5 HOH A 72 972 193 HOH HOH . H 5 HOH A 73 973 93 HOH HOH . H 5 HOH A 74 974 18 HOH HOH . H 5 HOH A 75 975 119 HOH HOH . H 5 HOH A 76 976 69 HOH HOH . H 5 HOH A 77 977 1 HOH HOH . H 5 HOH A 78 978 35 HOH HOH . H 5 HOH A 79 979 72 HOH HOH . H 5 HOH A 80 980 169 HOH HOH . H 5 HOH A 81 981 144 HOH HOH . H 5 HOH A 82 982 194 HOH HOH . H 5 HOH A 83 983 154 HOH HOH . H 5 HOH A 84 984 10 HOH HOH . H 5 HOH A 85 985 135 HOH HOH . H 5 HOH A 86 986 39 HOH HOH . H 5 HOH A 87 987 67 HOH HOH . H 5 HOH A 88 988 41 HOH HOH . H 5 HOH A 89 989 24 HOH HOH . H 5 HOH A 90 990 183 HOH HOH . H 5 HOH A 91 991 174 HOH HOH . H 5 HOH A 92 992 165 HOH HOH . H 5 HOH A 93 993 134 HOH HOH . H 5 HOH A 94 994 75 HOH HOH . H 5 HOH A 95 995 166 HOH HOH . H 5 HOH A 96 996 208 HOH HOH . H 5 HOH A 97 997 179 HOH HOH . H 5 HOH A 98 998 28 HOH HOH . H 5 HOH A 99 999 38 HOH HOH . H 5 HOH A 100 1000 164 HOH HOH . H 5 HOH A 101 1001 123 HOH HOH . H 5 HOH A 102 1002 81 HOH HOH . H 5 HOH A 103 1003 213 HOH HOH . H 5 HOH A 104 1004 49 HOH HOH . H 5 HOH A 105 1005 159 HOH HOH . H 5 HOH A 106 1006 133 HOH HOH . H 5 HOH A 107 1007 43 HOH HOH . H 5 HOH A 108 1008 51 HOH HOH . H 5 HOH A 109 1009 76 HOH HOH . H 5 HOH A 110 1010 112 HOH HOH . H 5 HOH A 111 1011 37 HOH HOH . H 5 HOH A 112 1012 2 HOH HOH . H 5 HOH A 113 1013 104 HOH HOH . H 5 HOH A 114 1014 22 HOH HOH . H 5 HOH A 115 1015 64 HOH HOH . H 5 HOH A 116 1016 61 HOH HOH . H 5 HOH A 117 1017 68 HOH HOH . H 5 HOH A 118 1018 78 HOH HOH . H 5 HOH A 119 1019 73 HOH HOH . H 5 HOH A 120 1020 86 HOH HOH . H 5 HOH A 121 1021 52 HOH HOH . H 5 HOH A 122 1022 32 HOH HOH . H 5 HOH A 123 1023 116 HOH HOH . H 5 HOH A 124 1024 191 HOH HOH . H 5 HOH A 125 1025 156 HOH HOH . H 5 HOH A 126 1026 83 HOH HOH . H 5 HOH A 127 1027 203 HOH HOH . H 5 HOH A 128 1028 124 HOH HOH . H 5 HOH A 129 1029 108 HOH HOH . H 5 HOH A 130 1030 137 HOH HOH . H 5 HOH A 131 1031 84 HOH HOH . H 5 HOH A 132 1032 168 HOH HOH . H 5 HOH A 133 1033 196 HOH HOH . H 5 HOH A 134 1034 150 HOH HOH . H 5 HOH A 135 1035 197 HOH HOH . H 5 HOH A 136 1036 20 HOH HOH . H 5 HOH A 137 1037 82 HOH HOH . H 5 HOH A 138 1038 128 HOH HOH . H 5 HOH A 139 1039 199 HOH HOH . H 5 HOH A 140 1040 7 HOH HOH . H 5 HOH A 141 1041 99 HOH HOH . H 5 HOH A 142 1042 214 HOH HOH . H 5 HOH A 143 1043 96 HOH HOH . H 5 HOH A 144 1044 106 HOH HOH . H 5 HOH A 145 1045 126 HOH HOH . H 5 HOH A 146 1046 103 HOH HOH . H 5 HOH A 147 1047 148 HOH HOH . H 5 HOH A 148 1048 50 HOH HOH . H 5 HOH A 149 1049 17 HOH HOH . H 5 HOH A 150 1050 138 HOH HOH . H 5 HOH A 151 1051 97 HOH HOH . H 5 HOH A 152 1052 141 HOH HOH . H 5 HOH A 153 1053 87 HOH HOH . H 5 HOH A 154 1054 205 HOH HOH . H 5 HOH A 155 1055 189 HOH HOH . H 5 HOH A 156 1056 171 HOH HOH . H 5 HOH A 157 1057 23 HOH HOH . H 5 HOH A 158 1058 58 HOH HOH . H 5 HOH A 159 1059 113 HOH HOH . H 5 HOH A 160 1060 48 HOH HOH . H 5 HOH A 161 1061 151 HOH HOH . H 5 HOH A 162 1062 59 HOH HOH . H 5 HOH A 163 1063 210 HOH HOH . H 5 HOH A 164 1064 40 HOH HOH . H 5 HOH A 165 1065 180 HOH HOH . H 5 HOH A 166 1066 163 HOH HOH . H 5 HOH A 167 1067 175 HOH HOH . H 5 HOH A 168 1068 172 HOH HOH . H 5 HOH A 169 1069 200 HOH HOH . H 5 HOH A 170 1070 139 HOH HOH . H 5 HOH A 171 1071 195 HOH HOH . H 5 HOH A 172 1072 152 HOH HOH . H 5 HOH A 173 1073 100 HOH HOH . H 5 HOH A 174 1074 201 HOH HOH . H 5 HOH A 175 1075 57 HOH HOH . H 5 HOH A 176 1076 178 HOH HOH . H 5 HOH A 177 1077 190 HOH HOH . H 5 HOH A 178 1078 53 HOH HOH . H 5 HOH A 179 1079 167 HOH HOH . H 5 HOH A 180 1080 44 HOH HOH . H 5 HOH A 181 1081 202 HOH HOH . H 5 HOH A 182 1082 212 HOH HOH . H 5 HOH A 183 1083 143 HOH HOH . H 5 HOH A 184 1084 176 HOH HOH . H 5 HOH A 185 1085 158 HOH HOH . H 5 HOH A 186 1086 215 HOH HOH . H 5 HOH A 187 1087 132 HOH HOH . H 5 HOH A 188 1088 146 HOH HOH . H 5 HOH A 189 1089 127 HOH HOH . H 5 HOH A 190 1090 85 HOH HOH . H 5 HOH A 191 1091 185 HOH HOH . H 5 HOH A 192 1092 120 HOH HOH . H 5 HOH A 193 1093 209 HOH HOH . H 5 HOH A 194 1094 114 HOH HOH . H 5 HOH A 195 1095 155 HOH HOH . H 5 HOH A 196 1096 153 HOH HOH . H 5 HOH A 197 1097 211 HOH HOH . H 5 HOH A 198 1098 216 HOH HOH . H 5 HOH A 199 1099 107 HOH HOH . H 5 HOH A 200 1100 184 HOH HOH . H 5 HOH A 201 1101 92 HOH HOH . H 5 HOH A 202 1102 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -10.599 10.991 19.269 1 44.95 ? C1 GOL 804 A 1 HETATM 2 O O1 GOL . . . E 3 -11.531 11.381 18.283 1 43.27 ? O1 GOL 804 A 1 HETATM 3 C C2 GOL . . . E 3 -9.432 11.972 19.294 1 63.3 ? C2 GOL 804 A 1 HETATM 4 O O2 GOL . . . E 3 -9.868 13.206 19.816 1 75.96 ? O2 GOL 804 A 1 HETATM 5 C C3 GOL . . . E 3 -8.304 11.435 20.167 1 75.03 ? C3 GOL 804 A 1 HETATM 6 O O3 GOL . . . E 3 -7.094 12.075 19.827 1 82.48 ? O3 GOL 804 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #