data_5JZA # _model_server_result.job_id Ow87ELVWfqy5J9JYpNbwwg _model_server_result.datetime_utc '2025-07-07 20:40:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 5JZA # _exptl.entry_id 5JZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.086 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OXALYLGLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JZA _cell.length_a 48.73 _cell.length_b 70.24 _cell.length_c 170.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 B MN MN . A MN 801 1_555 G O1 OGA . A OGA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 B MN MN . A MN 801 1_555 G O2' OGA . A OGA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc5 B MN MN . A MN 801 1_555 H O HOH . A HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 B MN MN . A MN 801 1_555 H O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'C4 H5 N O5' _chem_comp.formula_weight 147.086 _chem_comp.id OGA _chem_comp.mon_nstd_flag . _chem_comp.name N-OXALYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OGA sing 250 n n C1 O1 OGA doub 251 n n C1 O2 OGA sing 252 n n C2 O2' OGA doub 253 n n C2 N1 OGA sing 254 n n C4 C5 OGA sing 255 n n C4 N1 OGA sing 256 n n C4 H4C1 OGA sing 257 n n C4 H4C2 OGA sing 258 n n C5 O3 OGA sing 259 n n C5 O4 OGA doub 260 n n O2 H2 OGA sing 261 n n O3 H3 OGA sing 262 n n N1 H1 OGA sing 263 n n # _atom_sites.entry_id 5JZA _atom_sites.fract_transf_matrix[1][1] 0.020521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 801 1 MN MN . C 3 GOL A 1 802 2 GOL GOL . D 3 GOL A 1 803 3 GOL GOL . E 3 GOL A 1 804 4 GOL GOL . F 3 GOL A 1 805 5 GOL GOL . G 4 OGA A 1 806 1 OGA OGA . H 5 HOH A 1 901 12 HOH HOH . H 5 HOH A 2 902 54 HOH HOH . H 5 HOH A 3 903 121 HOH HOH . H 5 HOH A 4 904 30 HOH HOH . H 5 HOH A 5 905 34 HOH HOH . H 5 HOH A 6 906 117 HOH HOH . H 5 HOH A 7 907 8 HOH HOH . H 5 HOH A 8 908 80 HOH HOH . H 5 HOH A 9 909 6 HOH HOH . H 5 HOH A 10 910 26 HOH HOH . H 5 HOH A 11 911 3 HOH HOH . H 5 HOH A 12 912 42 HOH HOH . H 5 HOH A 13 913 5 HOH HOH . H 5 HOH A 14 914 226 HOH HOH . H 5 HOH A 15 915 122 HOH HOH . H 5 HOH A 16 916 68 HOH HOH . H 5 HOH A 17 917 45 HOH HOH . H 5 HOH A 18 918 118 HOH HOH . H 5 HOH A 19 919 16 HOH HOH . H 5 HOH A 20 920 110 HOH HOH . H 5 HOH A 21 921 11 HOH HOH . H 5 HOH A 22 922 33 HOH HOH . H 5 HOH A 23 923 25 HOH HOH . H 5 HOH A 24 924 31 HOH HOH . H 5 HOH A 25 925 47 HOH HOH . H 5 HOH A 26 926 13 HOH HOH . H 5 HOH A 27 927 223 HOH HOH . H 5 HOH A 28 928 136 HOH HOH . H 5 HOH A 29 929 115 HOH HOH . H 5 HOH A 30 930 86 HOH HOH . H 5 HOH A 31 931 70 HOH HOH . H 5 HOH A 32 932 27 HOH HOH . H 5 HOH A 33 933 159 HOH HOH . H 5 HOH A 34 934 50 HOH HOH . H 5 HOH A 35 935 79 HOH HOH . H 5 HOH A 36 936 72 HOH HOH . H 5 HOH A 37 937 219 HOH HOH . H 5 HOH A 38 938 247 HOH HOH . H 5 HOH A 39 939 2 HOH HOH . H 5 HOH A 40 940 75 HOH HOH . H 5 HOH A 41 941 49 HOH HOH . H 5 HOH A 42 942 174 HOH HOH . H 5 HOH A 43 943 142 HOH HOH . H 5 HOH A 44 944 62 HOH HOH . H 5 HOH A 45 945 182 HOH HOH . H 5 HOH A 46 946 240 HOH HOH . H 5 HOH A 47 947 24 HOH HOH . H 5 HOH A 48 948 43 HOH HOH . H 5 HOH A 49 949 56 HOH HOH . H 5 HOH A 50 950 37 HOH HOH . H 5 HOH A 51 951 21 HOH HOH . H 5 HOH A 52 952 150 HOH HOH . H 5 HOH A 53 953 10 HOH HOH . H 5 HOH A 54 954 135 HOH HOH . H 5 HOH A 55 955 35 HOH HOH . H 5 HOH A 56 956 18 HOH HOH . H 5 HOH A 57 957 64 HOH HOH . H 5 HOH A 58 958 55 HOH HOH . H 5 HOH A 59 959 7 HOH HOH . H 5 HOH A 60 960 168 HOH HOH . H 5 HOH A 61 961 9 HOH HOH . H 5 HOH A 62 962 65 HOH HOH . H 5 HOH A 63 963 101 HOH HOH . H 5 HOH A 64 964 17 HOH HOH . H 5 HOH A 65 965 67 HOH HOH . H 5 HOH A 66 966 22 HOH HOH . H 5 HOH A 67 967 51 HOH HOH . H 5 HOH A 68 968 105 HOH HOH . H 5 HOH A 69 969 191 HOH HOH . H 5 HOH A 70 970 144 HOH HOH . H 5 HOH A 71 971 99 HOH HOH . H 5 HOH A 72 972 32 HOH HOH . H 5 HOH A 73 973 169 HOH HOH . H 5 HOH A 74 974 46 HOH HOH . H 5 HOH A 75 975 59 HOH HOH . H 5 HOH A 76 976 102 HOH HOH . H 5 HOH A 77 977 83 HOH HOH . H 5 HOH A 78 978 38 HOH HOH . H 5 HOH A 79 979 61 HOH HOH . H 5 HOH A 80 980 156 HOH HOH . H 5 HOH A 81 981 19 HOH HOH . H 5 HOH A 82 982 205 HOH HOH . H 5 HOH A 83 983 137 HOH HOH . H 5 HOH A 84 984 180 HOH HOH . H 5 HOH A 85 985 245 HOH HOH . H 5 HOH A 86 986 74 HOH HOH . H 5 HOH A 87 987 126 HOH HOH . H 5 HOH A 88 988 20 HOH HOH . H 5 HOH A 89 989 116 HOH HOH . H 5 HOH A 90 990 23 HOH HOH . H 5 HOH A 91 991 82 HOH HOH . H 5 HOH A 92 992 217 HOH HOH . H 5 HOH A 93 993 29 HOH HOH . H 5 HOH A 94 994 163 HOH HOH . H 5 HOH A 95 995 251 HOH HOH . H 5 HOH A 96 996 73 HOH HOH . H 5 HOH A 97 997 52 HOH HOH . H 5 HOH A 98 998 69 HOH HOH . H 5 HOH A 99 999 195 HOH HOH . H 5 HOH A 100 1000 48 HOH HOH . H 5 HOH A 101 1001 58 HOH HOH . H 5 HOH A 102 1002 201 HOH HOH . H 5 HOH A 103 1003 200 HOH HOH . H 5 HOH A 104 1004 199 HOH HOH . H 5 HOH A 105 1005 1 HOH HOH . H 5 HOH A 106 1006 53 HOH HOH . H 5 HOH A 107 1007 229 HOH HOH . H 5 HOH A 108 1008 120 HOH HOH . H 5 HOH A 109 1009 230 HOH HOH . H 5 HOH A 110 1010 220 HOH HOH . H 5 HOH A 111 1011 40 HOH HOH . H 5 HOH A 112 1012 41 HOH HOH . H 5 HOH A 113 1013 39 HOH HOH . H 5 HOH A 114 1014 44 HOH HOH . H 5 HOH A 115 1015 202 HOH HOH . H 5 HOH A 116 1016 244 HOH HOH . H 5 HOH A 117 1017 241 HOH HOH . H 5 HOH A 118 1018 218 HOH HOH . H 5 HOH A 119 1019 85 HOH HOH . H 5 HOH A 120 1020 153 HOH HOH . H 5 HOH A 121 1021 211 HOH HOH . H 5 HOH A 122 1022 222 HOH HOH . H 5 HOH A 123 1023 216 HOH HOH . H 5 HOH A 124 1024 250 HOH HOH . H 5 HOH A 125 1025 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OGA . . . G 4 -8.749 7.953 -14.923 1 44.17 ? C1 OGA 806 A 1 HETATM 2 C C2 OGA . . . G 4 -10.031 7.601 -14.193 1 57.78 ? C2 OGA 806 A 1 HETATM 3 C C4 OGA . . . G 4 -11.45 8.04 -12.172 1 75.68 ? C4 OGA 806 A 1 HETATM 4 C C5 OGA . . . G 4 -11.272 8.748 -10.84 1 48.28 ? C5 OGA 806 A 1 HETATM 5 O O1 OGA . . . G 4 -8.563 7.631 -16.124 1 37.8 ? O1 OGA 806 A 1 HETATM 6 O O2 OGA . . . G 4 -7.881 8.583 -14.273 1 47.59 ? O2 OGA 806 A 1 HETATM 7 O O2' OGA . . . G 4 -10.789 6.792 -14.614 1 56.17 ? O2' OGA 806 A 1 HETATM 8 O O3 OGA . . . G 4 -11.249 8.068 -9.785 1 53.67 ? O3 OGA 806 A 1 HETATM 9 N N1 OGA . . . G 4 -10.272 8.305 -12.951 1 58.02 ? N1 OGA 806 A 1 HETATM 10 O O4 OGA . . . G 4 -11.152 10.002 -10.799 1 45.91 ? O4 OGA 806 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #