data_5JZD
#
_model_server_result.job_id            ofRjCWc2D5gd2OWPsgbPcA 
_model_server_result.datetime_utc      '2024-11-29 14:15:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jzd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    5JZD 
#
_exptl.entry_id    5JZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              226.183 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JZD 
_cell.length_a            62.469 
_cell.length_b            104.795 
_cell.length_c            140.014 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 241 A GLU 241 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc2 A OE2 GLU 241 A GLU 241 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 A OE2 GLU 376 A GLU 376 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 C O1 ISC . A ISC 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc5 C O2 ISC . A ISC 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc7 B OE2 GLU 241 B GLU 241 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 B OE2 GLU 376 B GLU 376 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc9 E O1 ISC . B ISC 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc10 E O2 ISC . B ISC 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc11 F MG MG . B MG 402 1_555 H O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc12 F MG MG . B MG 402 1_555 H O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C10 H10 O6' 
_chem_comp.formula_weight    226.183 
_chem_comp.id                ISC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ISOCHORISMIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 ISC sing 173 n n 
C O1 ISC doub 174 n n 
C O2 ISC sing 175 n n 
C1 C2 ISC sing 176 n n 
C1 C6 ISC doub 177 n n 
C2 C3 ISC sing 178 n n 
C2 O3 ISC sing 179 n n 
C3 C4 ISC sing 180 n n 
C3 O3' ISC sing 181 n n 
C4 C5 ISC doub 182 n n 
C5 C6 ISC sing 183 n n 
C1' O1' ISC sing 184 n n 
C1' C2' ISC sing 185 n n 
C1' O2' ISC doub 186 n n 
C2' C3' ISC doub 187 n n 
C2' O3' ISC sing 188 n n 
C2 H2 ISC sing 189 n n 
C3 H3 ISC sing 190 n n 
O3 HO3 ISC sing 191 n n 
C4 H4 ISC sing 192 n n 
C5 H5 ISC sing 193 n n 
C6 H6 ISC sing 194 n n 
C3' H3' ISC sing 195 n n 
C3' "H3'A" ISC sing 196 n n 
O1' HO1' ISC sing 197 n n 
O2 HO2 ISC sing 198 n n 
#
_atom_sites.entry_id                     5JZD 
_atom_sites.fract_transf_matrix[1][1]    0.016008 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ISC A 1 401 3 ISC ISC . 
D 3 MG A 1 402 2 MG MG . 
E 2 ISC B 1 401 2 ISC ISC . 
F 3 MG B 1 402 1 MG MG . 
G 4 HOH A 1 501 78 HOH HOH . 
G 4 HOH A 2 502 5 HOH HOH . 
G 4 HOH A 3 503 21 HOH HOH . 
G 4 HOH A 4 504 44 HOH HOH . 
G 4 HOH A 5 505 14 HOH HOH . 
G 4 HOH A 6 506 19 HOH HOH . 
G 4 HOH A 7 507 57 HOH HOH . 
G 4 HOH A 8 508 45 HOH HOH . 
G 4 HOH A 9 509 46 HOH HOH . 
G 4 HOH A 10 510 3 HOH HOH . 
G 4 HOH A 11 511 29 HOH HOH . 
G 4 HOH A 12 512 53 HOH HOH . 
G 4 HOH A 13 513 42 HOH HOH . 
G 4 HOH A 14 514 59 HOH HOH . 
G 4 HOH A 15 515 71 HOH HOH . 
G 4 HOH A 16 516 60 HOH HOH . 
G 4 HOH A 17 517 73 HOH HOH . 
H 4 HOH B 1 501 52 HOH HOH . 
H 4 HOH B 2 502 4 HOH HOH . 
H 4 HOH B 3 503 1 HOH HOH . 
H 4 HOH B 4 504 48 HOH HOH . 
H 4 HOH B 5 505 28 HOH HOH . 
H 4 HOH B 6 506 43 HOH HOH . 
H 4 HOH B 7 507 6 HOH HOH . 
H 4 HOH B 8 508 25 HOH HOH . 
H 4 HOH B 9 509 13 HOH HOH . 
H 4 HOH B 10 510 56 HOH HOH . 
H 4 HOH B 11 511 7 HOH HOH . 
H 4 HOH B 12 512 9 HOH HOH . 
H 4 HOH B 13 513 38 HOH HOH . 
H 4 HOH B 14 514 2 HOH HOH . 
H 4 HOH B 15 515 8 HOH HOH . 
H 4 HOH B 16 516 20 HOH HOH . 
H 4 HOH B 17 517 27 HOH HOH . 
H 4 HOH B 18 518 12 HOH HOH . 
H 4 HOH B 19 519 10 HOH HOH . 
H 4 HOH B 20 520 30 HOH HOH . 
H 4 HOH B 21 521 11 HOH HOH . 
H 4 HOH B 22 522 26 HOH HOH . 
H 4 HOH B 23 523 22 HOH HOH . 
H 4 HOH B 24 524 35 HOH HOH . 
H 4 HOH B 25 525 34 HOH HOH . 
H 4 HOH B 26 526 40 HOH HOH . 
H 4 HOH B 27 527 54 HOH HOH . 
H 4 HOH B 28 528 16 HOH HOH . 
H 4 HOH B 29 529 32 HOH HOH . 
H 4 HOH B 30 530 51 HOH HOH . 
H 4 HOH B 31 531 47 HOH HOH . 
H 4 HOH B 32 532 58 HOH HOH . 
H 4 HOH B 33 533 18 HOH HOH . 
H 4 HOH B 34 534 36 HOH HOH . 
H 4 HOH B 35 535 50 HOH HOH . 
H 4 HOH B 36 536 55 HOH HOH . 
H 4 HOH B 37 537 17 HOH HOH . 
H 4 HOH B 38 538 33 HOH HOH . 
H 4 HOH B 39 539 24 HOH HOH . 
H 4 HOH B 40 540 64 HOH HOH . 
H 4 HOH B 41 541 23 HOH HOH . 
H 4 HOH B 42 542 75 HOH HOH . 
H 4 HOH B 43 543 61 HOH HOH . 
H 4 HOH B 44 544 15 HOH HOH . 
H 4 HOH B 45 545 70 HOH HOH . 
H 4 HOH B 46 546 74 HOH HOH . 
H 4 HOH B 47 547 69 HOH HOH . 
H 4 HOH B 48 548 31 HOH HOH . 
H 4 HOH B 49 549 72 HOH HOH . 
H 4 HOH B 50 550 77 HOH HOH . 
H 4 HOH B 51 551 49 HOH HOH . 
H 4 HOH B 52 552 66 HOH HOH . 
H 4 HOH B 53 553 65 HOH HOH . 
H 4 HOH B 54 554 76 HOH HOH . 
H 4 HOH B 55 555 41 HOH HOH . 
H 4 HOH B 56 556 67 HOH HOH . 
H 4 HOH B 57 557 63 HOH HOH . 
H 4 HOH B 58 558 39 HOH HOH . 
H 4 HOH B 59 559 68 HOH HOH . 
H 4 HOH B 60 560 62 HOH HOH . 
H 4 HOH B 61 561 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ISC . . . E 2 13.434 -19.247 2.436 1 33.97 ? C ISC 401 B 1 
HETATM 2 C C1 ISC . . . E 2 13.731 -17.752 2.377 1 35.25 ? C1 ISC 401 B 1 
HETATM 3 O O1 ISC . . . E 2 13.31 -19.979 1.397 1 37.52 ? O1 ISC 401 B 1 
HETATM 4 C C2 ISC . . . E 2 14.29 -17.244 1.103 1 37.48 ? C2 ISC 401 B 1 
HETATM 5 O O2 ISC . . . E 2 13.271 -19.699 3.56 1 33.74 ? O2 ISC 401 B 1 
HETATM 6 C C3 ISC . . . E 2 14.264 -15.694 0.981 1 46.74 ? C3 ISC 401 B 1 
HETATM 7 O O3 ISC . . . E 2 15.643 -17.793 1.02 1 53.1 ? O3 ISC 401 B 1 
HETATM 8 C C4 ISC . . . E 2 14.699 -14.985 2.268 1 35.03 ? C4 ISC 401 B 1 
HETATM 9 C C5 ISC . . . E 2 13.903 -15.385 3.485 1 35.87 ? C5 ISC 401 B 1 
HETATM 10 C C6 ISC . . . E 2 13.497 -16.866 3.602 1 31.38 ? C6 ISC 401 B 1 
HETATM 11 C C1' ISC . . . E 2 11.103 -14.381 -0.651 1 39.15 ? C1' ISC 401 B 1 
HETATM 12 O O1' ISC . . . E 2 10.668 -13.946 0.449 1 32.63 ? O1' ISC 401 B 1 
HETATM 13 C C2' ISC . . . E 2 12.418 -15.126 -0.646 1 39.2 ? C2' ISC 401 B 1 
HETATM 14 O O2' ISC . . . E 2 10.493 -14.151 -1.732 1 34.11 ? O2' ISC 401 B 1 
HETATM 15 C C3' ISC . . . E 2 12.982 -15.487 -1.818 1 31.2 ? C3' ISC 401 B 1 
HETATM 16 O O3' ISC . . . E 2 12.917 -15.338 0.67 1 39.88 ? O3' ISC 401 B 1 
HETATM 17 H H2 ISC . . . E 2 13.762 -17.612 0.377 1 44.98 ? H2 ISC 401 B 1 
HETATM 18 H H3 ISC . . . E 2 14.847 -15.421 0.256 1 56.08 ? H3 ISC 401 B 1 
HETATM 19 H HO3 ISC . . . E 2 15.602 -18.624 0.846 1 63.72 ? HO3 ISC 401 B 1 
HETATM 20 H H4 ISC . . . E 2 15.574 -14.683 2.361 1 42.04 ? H4 ISC 401 B 1 
HETATM 21 H H5 ISC . . . E 2 13.893 -14.838 4.237 1 43.05 ? H5 ISC 401 B 1 
HETATM 22 H H6 ISC . . . E 2 12.908 -17.138 4.268 1 37.65 ? H6 ISC 401 B 1 
HETATM 23 H H3' ISC . . . E 2 13.792 -15.944 -1.823 1 37.44 ? H3' ISC 401 B 1 
HETATM 24 H "H3'A" ISC . . . E 2 12.557 -15.287 -2.621 1 37.44 ? "H3'A" ISC 401 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           24 
#