data_5JZD
#
_model_server_result.job_id            Qb9tMMSHJsXD6NElBM55QA 
_model_server_result.datetime_utc      '2024-10-10 06:27:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jzd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
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_entry.id    5JZD 
#
_exptl.entry_id    5JZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JZD 
_cell.length_a            62.469 
_cell.length_b            104.795 
_cell.length_c            140.014 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 241 A GLU 241 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc2 A OE2 GLU 241 A GLU 241 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 A OE2 GLU 376 A GLU 376 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 C O1 ISC . A ISC 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc5 C O2 ISC . A ISC 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc7 B OE2 GLU 241 B GLU 241 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 B OE2 GLU 376 B GLU 376 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc9 E O1 ISC . B ISC 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc10 E O2 ISC . B ISC 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc11 F MG MG . B MG 402 1_555 H O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc12 F MG MG . B MG 402 1_555 H O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     5JZD 
_atom_sites.fract_transf_matrix[1][1]    0.016008 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ISC A 1 401 3 ISC ISC . 
D 3 MG A 1 402 2 MG MG . 
E 2 ISC B 1 401 2 ISC ISC . 
F 3 MG B 1 402 1 MG MG . 
G 4 HOH A 1 501 78 HOH HOH . 
G 4 HOH A 2 502 5 HOH HOH . 
G 4 HOH A 3 503 21 HOH HOH . 
G 4 HOH A 4 504 44 HOH HOH . 
G 4 HOH A 5 505 14 HOH HOH . 
G 4 HOH A 6 506 19 HOH HOH . 
G 4 HOH A 7 507 57 HOH HOH . 
G 4 HOH A 8 508 45 HOH HOH . 
G 4 HOH A 9 509 46 HOH HOH . 
G 4 HOH A 10 510 3 HOH HOH . 
G 4 HOH A 11 511 29 HOH HOH . 
G 4 HOH A 12 512 53 HOH HOH . 
G 4 HOH A 13 513 42 HOH HOH . 
G 4 HOH A 14 514 59 HOH HOH . 
G 4 HOH A 15 515 71 HOH HOH . 
G 4 HOH A 16 516 60 HOH HOH . 
G 4 HOH A 17 517 73 HOH HOH . 
H 4 HOH B 1 501 52 HOH HOH . 
H 4 HOH B 2 502 4 HOH HOH . 
H 4 HOH B 3 503 1 HOH HOH . 
H 4 HOH B 4 504 48 HOH HOH . 
H 4 HOH B 5 505 28 HOH HOH . 
H 4 HOH B 6 506 43 HOH HOH . 
H 4 HOH B 7 507 6 HOH HOH . 
H 4 HOH B 8 508 25 HOH HOH . 
H 4 HOH B 9 509 13 HOH HOH . 
H 4 HOH B 10 510 56 HOH HOH . 
H 4 HOH B 11 511 7 HOH HOH . 
H 4 HOH B 12 512 9 HOH HOH . 
H 4 HOH B 13 513 38 HOH HOH . 
H 4 HOH B 14 514 2 HOH HOH . 
H 4 HOH B 15 515 8 HOH HOH . 
H 4 HOH B 16 516 20 HOH HOH . 
H 4 HOH B 17 517 27 HOH HOH . 
H 4 HOH B 18 518 12 HOH HOH . 
H 4 HOH B 19 519 10 HOH HOH . 
H 4 HOH B 20 520 30 HOH HOH . 
H 4 HOH B 21 521 11 HOH HOH . 
H 4 HOH B 22 522 26 HOH HOH . 
H 4 HOH B 23 523 22 HOH HOH . 
H 4 HOH B 24 524 35 HOH HOH . 
H 4 HOH B 25 525 34 HOH HOH . 
H 4 HOH B 26 526 40 HOH HOH . 
H 4 HOH B 27 527 54 HOH HOH . 
H 4 HOH B 28 528 16 HOH HOH . 
H 4 HOH B 29 529 32 HOH HOH . 
H 4 HOH B 30 530 51 HOH HOH . 
H 4 HOH B 31 531 47 HOH HOH . 
H 4 HOH B 32 532 58 HOH HOH . 
H 4 HOH B 33 533 18 HOH HOH . 
H 4 HOH B 34 534 36 HOH HOH . 
H 4 HOH B 35 535 50 HOH HOH . 
H 4 HOH B 36 536 55 HOH HOH . 
H 4 HOH B 37 537 17 HOH HOH . 
H 4 HOH B 38 538 33 HOH HOH . 
H 4 HOH B 39 539 24 HOH HOH . 
H 4 HOH B 40 540 64 HOH HOH . 
H 4 HOH B 41 541 23 HOH HOH . 
H 4 HOH B 42 542 75 HOH HOH . 
H 4 HOH B 43 543 61 HOH HOH . 
H 4 HOH B 44 544 15 HOH HOH . 
H 4 HOH B 45 545 70 HOH HOH . 
H 4 HOH B 46 546 74 HOH HOH . 
H 4 HOH B 47 547 69 HOH HOH . 
H 4 HOH B 48 548 31 HOH HOH . 
H 4 HOH B 49 549 72 HOH HOH . 
H 4 HOH B 50 550 77 HOH HOH . 
H 4 HOH B 51 551 49 HOH HOH . 
H 4 HOH B 52 552 66 HOH HOH . 
H 4 HOH B 53 553 65 HOH HOH . 
H 4 HOH B 54 554 76 HOH HOH . 
H 4 HOH B 55 555 41 HOH HOH . 
H 4 HOH B 56 556 67 HOH HOH . 
H 4 HOH B 57 557 63 HOH HOH . 
H 4 HOH B 58 558 39 HOH HOH . 
H 4 HOH B 59 559 68 HOH HOH . 
H 4 HOH B 60 560 62 HOH HOH . 
H 4 HOH B 61 561 37 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               12.762 
_atom_site.Cartn_y               -21.616 
_atom_site.Cartn_z               2.617 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.5 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#