data_5JZN
#
_model_server_result.job_id            bb5RJuau-IDftWoKtlcdow 
_model_server_result.datetime_utc      '2024-11-24 19:50:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jzn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    5JZN 
#
_exptl.entry_id    5JZN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              614.202 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-CHLORO-N-[2-METHOXY-4-[4-(4-METHYLPIPERAZIN-1-YL)PIPERIDIN-1-YL]PHENYL]-N'-(2-PROPAN-2-YLSULFONYLPHENYL)PYRIMIDINE-2,4-DIAMINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5JZN 
_cell.length_a            106.36 
_cell.length_b            106.36 
_cell.length_c            157.37 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JZN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C30 H40 Cl N7 O3 S' 
_chem_comp.formula_weight    614.202 
_chem_comp.id                GUI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-CHLORO-N-[2-METHOXY-4-[4-(4-METHYLPIPERAZIN-1-YL)PIPERIDIN-1-YL]PHENYL]-N'-(2-PROPAN-2-YLSULFONYLPHENYL)PYRIMIDINE-2,4-DIAMINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-[1-(4-{[5-CHLORO-4-({2-[(1-METHYLETHYL)SULFONYL]PHENYL}AMINO)PYRIMIDIN-2-YL]AMINO}-3-METHOXYPHENYL)PIPERIDIN-4-YL]-1-METHYLPIPERAZIN-1-IUM 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GUI sing 129 n y 
C1 C6 GUI doub 130 n y 
C1 CL GUI sing 131 n n 
C2 N3 GUI doub 132 n y 
C2 N29 GUI sing 133 n n 
N3 C4 GUI sing 134 n y 
C4 N5 GUI doub 135 n y 
C4 N7 GUI sing 136 n n 
N5 C6 GUI sing 137 n y 
N7 C8 GUI sing 138 n n 
C8 C9 GUI sing 139 n y 
C8 C13 GUI doub 140 n y 
C9 C10 GUI doub 141 n y 
C10 C11 GUI sing 142 n y 
C11 C12 GUI doub 143 n y 
C11 N16 GUI sing 144 n n 
C12 C13 GUI sing 145 n y 
C13 O14 GUI sing 146 n n 
O14 C15 GUI sing 147 n n 
N16 C17 GUI sing 148 n n 
N16 C21 GUI sing 149 n n 
C17 C18 GUI sing 150 n n 
C18 C19 GUI sing 151 n n 
C19 C20 GUI sing 152 n n 
C19 N22 GUI sing 153 n n 
C20 C21 GUI sing 154 n n 
N22 C23 GUI sing 155 n n 
N22 C27 GUI sing 156 n n 
C23 C24 GUI sing 157 n n 
C24 N25 GUI sing 158 n n 
N25 C26 GUI sing 159 n n 
N25 C28 GUI sing 160 n n 
C26 C27 GUI sing 161 n n 
N29 C30 GUI sing 162 n n 
C30 C31 GUI sing 163 n y 
C30 C35 GUI doub 164 n y 
C31 C32 GUI doub 165 n y 
C31 S36 GUI sing 166 n n 
C32 C33 GUI sing 167 n y 
C33 C34 GUI doub 168 n y 
C34 C35 GUI sing 169 n y 
S36 C37 GUI sing 170 n n 
S36 O40 GUI doub 171 n n 
S36 O41 GUI doub 172 n n 
C37 C38 GUI sing 173 n n 
C37 C39 GUI sing 174 n n 
C6 H6 GUI sing 175 n n 
N29 H29 GUI sing 176 n n 
N7 H7 GUI sing 177 n n 
C9 H9 GUI sing 178 n n 
C10 H10 GUI sing 179 n n 
C12 H12 GUI sing 180 n n 
C15 H151 GUI sing 181 n n 
C15 H152 GUI sing 182 n n 
C15 H153 GUI sing 183 n n 
C17 H171 GUI sing 184 n n 
C17 H172 GUI sing 185 n n 
C21 H211 GUI sing 186 n n 
C21 H212 GUI sing 187 n n 
C18 H181 GUI sing 188 n n 
C18 H182 GUI sing 189 n n 
C19 H19 GUI sing 190 n n 
C20 H201 GUI sing 191 n n 
C20 H202 GUI sing 192 n n 
C23 H231 GUI sing 193 n n 
C23 H232 GUI sing 194 n n 
C27 H271 GUI sing 195 n n 
C27 H272 GUI sing 196 n n 
C24 H241 GUI sing 197 n n 
C24 H242 GUI sing 198 n n 
C26 H261 GUI sing 199 n n 
C26 H262 GUI sing 200 n n 
C28 H281 GUI sing 201 n n 
C28 H282 GUI sing 202 n n 
C28 H283 GUI sing 203 n n 
C35 H35 GUI sing 204 n n 
C32 H32 GUI sing 205 n n 
C33 H33 GUI sing 206 n n 
C34 H34 GUI sing 207 n n 
C37 H37 GUI sing 208 n n 
C38 H381 GUI sing 209 n n 
C38 H382 GUI sing 210 n n 
C38 H383 GUI sing 211 n n 
C39 H391 GUI sing 212 n n 
C39 H392 GUI sing 213 n n 
C39 H393 GUI sing 214 n n 
#
_atom_sites.entry_id                     5JZN 
_atom_sites.fract_transf_matrix[1][1]    0.009402 
_atom_sites.fract_transf_matrix[1][2]    0.005428 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006354 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GUI A 1 701 1502 GUI GUI . 
D 3 SO4 A 1 702 1 SO4 SO4 . 
E 2 GUI B 1 701 1502 GUI GUI . 
F 4 HOH A 1 801 167 HOH HOH . 
F 4 HOH A 2 802 309 HOH HOH . 
F 4 HOH A 3 803 83 HOH HOH . 
F 4 HOH A 4 804 121 HOH HOH . 
F 4 HOH A 5 805 26 HOH HOH . 
F 4 HOH A 6 806 15 HOH HOH . 
F 4 HOH A 7 807 156 HOH HOH . 
F 4 HOH A 8 808 5 HOH HOH . 
F 4 HOH A 9 809 68 HOH HOH . 
F 4 HOH A 10 810 165 HOH HOH . 
F 4 HOH A 11 811 27 HOH HOH . 
F 4 HOH A 12 812 24 HOH HOH . 
F 4 HOH A 13 813 59 HOH HOH . 
F 4 HOH A 14 814 19 HOH HOH . 
F 4 HOH A 15 815 104 HOH HOH . 
F 4 HOH A 16 816 97 HOH HOH . 
F 4 HOH A 17 817 126 HOH HOH . 
F 4 HOH A 18 818 120 HOH HOH . 
F 4 HOH A 19 819 41 HOH HOH . 
F 4 HOH A 20 820 166 HOH HOH . 
F 4 HOH A 21 821 34 HOH HOH . 
F 4 HOH A 22 822 110 HOH HOH . 
F 4 HOH A 23 823 20 HOH HOH . 
G 4 HOH B 1 801 18 HOH HOH . 
G 4 HOH B 2 802 277 HOH HOH . 
G 4 HOH B 3 803 80 HOH HOH . 
G 4 HOH B 4 804 22 HOH HOH . 
G 4 HOH B 5 805 11 HOH HOH . 
G 4 HOH B 6 806 1 HOH HOH . 
G 4 HOH B 7 807 168 HOH HOH . 
G 4 HOH B 8 808 86 HOH HOH . 
G 4 HOH B 9 809 67 HOH HOH . 
G 4 HOH B 10 810 13 HOH HOH . 
G 4 HOH B 11 811 71 HOH HOH . 
G 4 HOH B 12 812 50 HOH HOH . 
G 4 HOH B 13 813 63 HOH HOH . 
G 4 HOH B 14 814 105 HOH HOH . 
G 4 HOH B 15 815 3 HOH HOH . 
G 4 HOH B 16 816 237 HOH HOH . 
G 4 HOH B 17 817 123 HOH HOH . 
G 4 HOH B 18 818 219 HOH HOH . 
G 4 HOH B 19 819 21 HOH HOH . 
G 4 HOH B 20 820 25 HOH HOH . 
G 4 HOH B 21 821 199 HOH HOH . 
G 4 HOH B 22 822 56 HOH HOH . 
G 4 HOH B 23 823 61 HOH HOH . 
G 4 HOH B 24 824 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GUI . . . E 2 5.508 100.457 -30.247 1 36.96 ? C1 GUI 701 B 1 
HETATM 2 C C2 GUI . . . E 2 5.894 100.972 -31.576 1 41.29 ? C2 GUI 701 B 1 
HETATM 3 N N3 GUI . . . E 2 5.491 100.281 -32.651 1 32.09 ? N3 GUI 701 B 1 
HETATM 4 C C4 GUI . . . E 2 4.764 99.154 -32.551 1 33.45 ? C4 GUI 701 B 1 
HETATM 5 N N5 GUI . . . E 2 4.404 98.667 -31.33 1 30.42 ? N5 GUI 701 B 1 
HETATM 6 C C6 GUI . . . E 2 4.758 99.283 -30.186 1 31.08 ? C6 GUI 701 B 1 
HETATM 7 N N7 GUI . . . E 2 4.4 98.503 -33.688 1 37.31 ? N7 GUI 701 B 1 
HETATM 8 C C8 GUI . . . E 2 4.67 98.89 -34.973 1 39.22 ? C8 GUI 701 B 1 
HETATM 9 C C9 GUI . . . E 2 4.858 100.202 -35.416 1 40.43 ? C9 GUI 701 B 1 
HETATM 10 C C10 GUI . . . E 2 5.129 100.49 -36.75 1 39.33 ? C10 GUI 701 B 1 
HETATM 11 C C11 GUI . . . E 2 5.215 99.478 -37.701 1 46.87 ? C11 GUI 701 B 1 
HETATM 12 C C12 GUI . . . E 2 5.009 98.151 -37.311 1 35.51 ? C12 GUI 701 B 1 
HETATM 13 C C13 GUI . . . E 2 4.751 97.821 -35.983 1 39.32 ? C13 GUI 701 B 1 
HETATM 14 O O14 GUI . . . E 2 4.548 96.536 -35.548 1 47.81 ? O14 GUI 701 B 1 
HETATM 15 C C15 GUI . . . E 2 5.628 95.611 -35.489 1 47.05 ? C15 GUI 701 B 1 
HETATM 16 N N16 GUI . . . E 2 5.457 99.821 -39.061 1 55.88 ? N16 GUI 701 B 1 
HETATM 17 C C17 GUI . . . E 2 6.449 100.898 -39.229 1 46.31 ? C17 GUI 701 B 1 
HETATM 18 C C18 GUI . . . E 2 6.423 101.368 -40.685 1 59.05 ? C18 GUI 701 B 1 
HETATM 19 C C19 GUI . . . E 2 6.618 100.227 -41.692 1 71.58 ? C19 GUI 701 B 1 
HETATM 20 C C20 GUI . . . E 2 5.742 99.029 -41.328 1 52.22 ? C20 GUI 701 B 1 
HETATM 21 C C21 GUI . . . E 2 5.895 98.668 -39.859 1 51.96 ? C21 GUI 701 B 1 
HETATM 22 N N22 GUI . . . E 2 6.269 100.648 -43.065 1 70.57 ? N22 GUI 701 B 1 
HETATM 23 C C23 GUI . . . E 2 6.573 99.56 -44.013 1 67.24 ? C23 GUI 701 B 1 
HETATM 24 C C24 GUI . . . E 2 6.069 99.959 -45.397 1 77.35 ? C24 GUI 701 B 1 
HETATM 25 N N25 GUI . . . E 2 6.698 101.217 -45.842 1 85.37 ? N25 GUI 701 B 1 
HETATM 26 C C26 GUI . . . E 2 6.522 102.298 -44.851 1 73.51 ? C26 GUI 701 B 1 
HETATM 27 C C27 GUI . . . E 2 7.007 101.859 -43.469 1 70.46 ? C27 GUI 701 B 1 
HETATM 28 C C28 GUI . . . E 2 6.082 101.626 -47.114 1 70.41 ? C28 GUI 701 B 1 
HETATM 29 N N29 GUI . . . E 2 6.614 102.116 -31.648 1 40.07 ? N29 GUI 701 B 1 
HETATM 30 C C30 GUI . . . E 2 7.085 102.699 -32.777 1 45 ? C30 GUI 701 B 1 
HETATM 31 C C31 GUI . . . E 2 7.33 104.166 -32.764 1 46.24 ? C31 GUI 701 B 1 
HETATM 32 C C32 GUI . . . E 2 7.835 104.76 -33.914 1 40.57 ? C32 GUI 701 B 1 
HETATM 33 C C33 GUI . . . E 2 8.069 104.003 -35.057 1 34.22 ? C33 GUI 701 B 1 
HETATM 34 C C34 GUI . . . E 2 7.825 102.638 -35.076 1 38.19 ? C34 GUI 701 B 1 
HETATM 35 C C35 GUI . . . E 2 7.342 101.993 -33.95 1 37.86 ? C35 GUI 701 B 1 
HETATM 36 S S36 GUI . . . E 2 7.081 105.036 -31.443 1 53.7 ? S36 GUI 701 B 1 
HETATM 37 C C37 GUI . . . E 2 5.583 105.767 -31.339 1 41.51 ? C37 GUI 701 B 1 
HETATM 38 C C38 GUI . . . E 2 4.465 104.743 -31.505 1 31.74 ? C38 GUI 701 B 1 
HETATM 39 C C39 GUI . . . E 2 5.492 106.915 -32.342 1 44.45 ? C39 GUI 701 B 1 
HETATM 40 O O40 GUI . . . E 2 8.098 106.045 -31.396 1 44.22 ? O40 GUI 701 B 1 
HETATM 41 O O41 GUI . . . E 2 7.198 104.181 -30.299 1 55.5 ? O41 GUI 701 B 1 
HETATM 42 CL CL GUI . . . E 2 6.048 101.394 -28.813 1 50.81 ? CL GUI 701 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           210 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#