data_5JZU # _model_server_result.job_id m28MYcPLQPY843w1Ho7MdA _model_server_result.datetime_utc '2025-02-18 04:47:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5JZU # _exptl.entry_id 5JZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JZU _cell.length_a 50.23 _cell.length_b 90.81 _cell.length_c 124.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 C MN MN . A MN 801 1_555 D O2' OGA . A OGA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc4 C MN MN . A MN 801 1_555 D O2 OGA . A OGA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc5 C MN MN . A MN 801 1_555 E O HOH . A HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 C MN MN . A MN 801 1_555 B OD2 ASP 18 B ASP 103 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JZU _atom_sites.fract_transf_matrix[1][1] 0.019908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 801 1 MN MN . D 4 OGA A 1 802 2 OGA OGA . E 5 HOH A 1 901 97 HOH HOH . E 5 HOH A 2 902 66 HOH HOH . E 5 HOH A 3 903 43 HOH HOH . E 5 HOH A 4 904 30 HOH HOH . E 5 HOH A 5 905 13 HOH HOH . E 5 HOH A 6 906 100 HOH HOH . E 5 HOH A 7 907 38 HOH HOH . E 5 HOH A 8 908 61 HOH HOH . E 5 HOH A 9 909 104 HOH HOH . E 5 HOH A 10 910 15 HOH HOH . E 5 HOH A 11 911 47 HOH HOH . E 5 HOH A 12 912 17 HOH HOH . E 5 HOH A 13 913 1 HOH HOH . E 5 HOH A 14 914 64 HOH HOH . E 5 HOH A 15 915 14 HOH HOH . E 5 HOH A 16 916 8 HOH HOH . E 5 HOH A 17 917 22 HOH HOH . E 5 HOH A 18 918 25 HOH HOH . E 5 HOH A 19 919 18 HOH HOH . E 5 HOH A 20 920 85 HOH HOH . E 5 HOH A 21 921 6 HOH HOH . E 5 HOH A 22 922 65 HOH HOH . E 5 HOH A 23 923 2 HOH HOH . E 5 HOH A 24 924 9 HOH HOH . E 5 HOH A 25 925 5 HOH HOH . E 5 HOH A 26 926 7 HOH HOH . E 5 HOH A 27 927 76 HOH HOH . E 5 HOH A 28 928 3 HOH HOH . E 5 HOH A 29 929 54 HOH HOH . E 5 HOH A 30 930 78 HOH HOH . E 5 HOH A 31 931 26 HOH HOH . E 5 HOH A 32 932 77 HOH HOH . E 5 HOH A 33 933 34 HOH HOH . E 5 HOH A 34 934 91 HOH HOH . E 5 HOH A 35 935 83 HOH HOH . E 5 HOH A 36 936 74 HOH HOH . E 5 HOH A 37 937 136 HOH HOH . E 5 HOH A 38 938 11 HOH HOH . E 5 HOH A 39 939 73 HOH HOH . E 5 HOH A 40 940 86 HOH HOH . E 5 HOH A 41 941 24 HOH HOH . E 5 HOH A 42 942 39 HOH HOH . E 5 HOH A 43 943 89 HOH HOH . E 5 HOH A 44 944 41 HOH HOH . E 5 HOH A 45 945 29 HOH HOH . E 5 HOH A 46 946 28 HOH HOH . E 5 HOH A 47 947 40 HOH HOH . E 5 HOH A 48 948 16 HOH HOH . E 5 HOH A 49 949 33 HOH HOH . E 5 HOH A 50 950 55 HOH HOH . E 5 HOH A 51 951 108 HOH HOH . E 5 HOH A 52 952 21 HOH HOH . E 5 HOH A 53 953 31 HOH HOH . E 5 HOH A 54 954 132 HOH HOH . E 5 HOH A 55 955 72 HOH HOH . E 5 HOH A 56 956 82 HOH HOH . E 5 HOH A 57 957 106 HOH HOH . E 5 HOH A 58 958 42 HOH HOH . E 5 HOH A 59 959 110 HOH HOH . E 5 HOH A 60 960 63 HOH HOH . E 5 HOH A 61 961 105 HOH HOH . E 5 HOH A 62 962 109 HOH HOH . E 5 HOH A 63 963 107 HOH HOH . E 5 HOH A 64 964 117 HOH HOH . E 5 HOH A 65 965 113 HOH HOH . E 5 HOH A 66 966 103 HOH HOH . E 5 HOH A 67 967 84 HOH HOH . E 5 HOH A 68 968 51 HOH HOH . E 5 HOH A 69 969 19 HOH HOH . E 5 HOH A 70 970 60 HOH HOH . E 5 HOH A 71 971 128 HOH HOH . E 5 HOH A 72 972 129 HOH HOH . E 5 HOH A 73 973 131 HOH HOH . E 5 HOH A 74 974 68 HOH HOH . E 5 HOH A 75 975 118 HOH HOH . E 5 HOH A 76 976 122 HOH HOH . E 5 HOH A 77 977 35 HOH HOH . E 5 HOH A 78 978 46 HOH HOH . E 5 HOH A 79 979 93 HOH HOH . E 5 HOH A 80 980 112 HOH HOH . E 5 HOH A 81 981 20 HOH HOH . F 5 HOH B 1 201 67 HOH HOH . F 5 HOH B 2 202 12 HOH HOH . F 5 HOH B 3 203 94 HOH HOH . F 5 HOH B 4 204 37 HOH HOH . F 5 HOH B 5 205 95 HOH HOH . F 5 HOH B 6 206 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 59.359 _atom_site.Cartn_y 17.162 _atom_site.Cartn_z 18.712 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #