data_5JZU
#
_model_server_result.job_id            2-iDecXHhga4mQkUhBtYVA 
_model_server_result.datetime_utc      '2024-11-25 12:25:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jzu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    5JZU 
#
_exptl.entry_id    5JZU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.086 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OXALYLGLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JZU 
_cell.length_a            50.23 
_cell.length_b            90.81 
_cell.length_c            124.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JZU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc3 C MN MN . A MN 801 1_555 D O2' OGA . A OGA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc4 C MN MN . A MN 801 1_555 D O2 OGA . A OGA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc5 C MN MN . A MN 801 1_555 E O HOH . A HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc6 C MN MN . A MN 801 1_555 B OD2 ASP 18 B ASP 103 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.791 ? 
#
_chem_comp.formula           'C4 H5 N O5' 
_chem_comp.formula_weight    147.086 
_chem_comp.id                OGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OXALYLGLYCINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OGA sing 237 n n 
C1 O1 OGA doub 238 n n 
C1 O2 OGA sing 239 n n 
C2 O2' OGA doub 240 n n 
C2 N1 OGA sing 241 n n 
C4 C5 OGA sing 242 n n 
C4 N1 OGA sing 243 n n 
C4 H4C1 OGA sing 244 n n 
C4 H4C2 OGA sing 245 n n 
C5 O3 OGA sing 246 n n 
C5 O4 OGA doub 247 n n 
O2 H2 OGA sing 248 n n 
O3 H3 OGA sing 249 n n 
N1 H1 OGA sing 250 n n 
#
_atom_sites.entry_id                     5JZU 
_atom_sites.fract_transf_matrix[1][1]    0.019908 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011012 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008059 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 801 1 MN MN . 
D 4 OGA A 1 802 2 OGA OGA . 
E 5 HOH A 1 901 97 HOH HOH . 
E 5 HOH A 2 902 66 HOH HOH . 
E 5 HOH A 3 903 43 HOH HOH . 
E 5 HOH A 4 904 30 HOH HOH . 
E 5 HOH A 5 905 13 HOH HOH . 
E 5 HOH A 6 906 100 HOH HOH . 
E 5 HOH A 7 907 38 HOH HOH . 
E 5 HOH A 8 908 61 HOH HOH . 
E 5 HOH A 9 909 104 HOH HOH . 
E 5 HOH A 10 910 15 HOH HOH . 
E 5 HOH A 11 911 47 HOH HOH . 
E 5 HOH A 12 912 17 HOH HOH . 
E 5 HOH A 13 913 1 HOH HOH . 
E 5 HOH A 14 914 64 HOH HOH . 
E 5 HOH A 15 915 14 HOH HOH . 
E 5 HOH A 16 916 8 HOH HOH . 
E 5 HOH A 17 917 22 HOH HOH . 
E 5 HOH A 18 918 25 HOH HOH . 
E 5 HOH A 19 919 18 HOH HOH . 
E 5 HOH A 20 920 85 HOH HOH . 
E 5 HOH A 21 921 6 HOH HOH . 
E 5 HOH A 22 922 65 HOH HOH . 
E 5 HOH A 23 923 2 HOH HOH . 
E 5 HOH A 24 924 9 HOH HOH . 
E 5 HOH A 25 925 5 HOH HOH . 
E 5 HOH A 26 926 7 HOH HOH . 
E 5 HOH A 27 927 76 HOH HOH . 
E 5 HOH A 28 928 3 HOH HOH . 
E 5 HOH A 29 929 54 HOH HOH . 
E 5 HOH A 30 930 78 HOH HOH . 
E 5 HOH A 31 931 26 HOH HOH . 
E 5 HOH A 32 932 77 HOH HOH . 
E 5 HOH A 33 933 34 HOH HOH . 
E 5 HOH A 34 934 91 HOH HOH . 
E 5 HOH A 35 935 83 HOH HOH . 
E 5 HOH A 36 936 74 HOH HOH . 
E 5 HOH A 37 937 136 HOH HOH . 
E 5 HOH A 38 938 11 HOH HOH . 
E 5 HOH A 39 939 73 HOH HOH . 
E 5 HOH A 40 940 86 HOH HOH . 
E 5 HOH A 41 941 24 HOH HOH . 
E 5 HOH A 42 942 39 HOH HOH . 
E 5 HOH A 43 943 89 HOH HOH . 
E 5 HOH A 44 944 41 HOH HOH . 
E 5 HOH A 45 945 29 HOH HOH . 
E 5 HOH A 46 946 28 HOH HOH . 
E 5 HOH A 47 947 40 HOH HOH . 
E 5 HOH A 48 948 16 HOH HOH . 
E 5 HOH A 49 949 33 HOH HOH . 
E 5 HOH A 50 950 55 HOH HOH . 
E 5 HOH A 51 951 108 HOH HOH . 
E 5 HOH A 52 952 21 HOH HOH . 
E 5 HOH A 53 953 31 HOH HOH . 
E 5 HOH A 54 954 132 HOH HOH . 
E 5 HOH A 55 955 72 HOH HOH . 
E 5 HOH A 56 956 82 HOH HOH . 
E 5 HOH A 57 957 106 HOH HOH . 
E 5 HOH A 58 958 42 HOH HOH . 
E 5 HOH A 59 959 110 HOH HOH . 
E 5 HOH A 60 960 63 HOH HOH . 
E 5 HOH A 61 961 105 HOH HOH . 
E 5 HOH A 62 962 109 HOH HOH . 
E 5 HOH A 63 963 107 HOH HOH . 
E 5 HOH A 64 964 117 HOH HOH . 
E 5 HOH A 65 965 113 HOH HOH . 
E 5 HOH A 66 966 103 HOH HOH . 
E 5 HOH A 67 967 84 HOH HOH . 
E 5 HOH A 68 968 51 HOH HOH . 
E 5 HOH A 69 969 19 HOH HOH . 
E 5 HOH A 70 970 60 HOH HOH . 
E 5 HOH A 71 971 128 HOH HOH . 
E 5 HOH A 72 972 129 HOH HOH . 
E 5 HOH A 73 973 131 HOH HOH . 
E 5 HOH A 74 974 68 HOH HOH . 
E 5 HOH A 75 975 118 HOH HOH . 
E 5 HOH A 76 976 122 HOH HOH . 
E 5 HOH A 77 977 35 HOH HOH . 
E 5 HOH A 78 978 46 HOH HOH . 
E 5 HOH A 79 979 93 HOH HOH . 
E 5 HOH A 80 980 112 HOH HOH . 
E 5 HOH A 81 981 20 HOH HOH . 
F 5 HOH B 1 201 67 HOH HOH . 
F 5 HOH B 2 202 12 HOH HOH . 
F 5 HOH B 3 203 94 HOH HOH . 
F 5 HOH B 4 204 37 HOH HOH . 
F 5 HOH B 5 205 95 HOH HOH . 
F 5 HOH B 6 206 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OGA . . . D 4 57.654 17.729 16.694 1 34.69 ? C1 OGA 802 A 1 
HETATM 2 C C2 OGA . . . D 4 58.769 17.116 15.864 1 35.79 ? C2 OGA 802 A 1 
HETATM 3 C C4 OGA . . . D 4 59.76 17.01 13.526 1 38.59 ? C4 OGA 802 A 1 
HETATM 4 C C5 OGA . . . D 4 59.623 17.845 12.263 1 39.83 ? C5 OGA 802 A 1 
HETATM 5 O O1 OGA . . . D 4 56.714 18.275 16.067 1 33.65 ? O1 OGA 802 A 1 
HETATM 6 O O2 OGA . . . D 4 57.668 17.703 17.955 1 34.39 ? O2 OGA 802 A 1 
HETATM 7 O O2' OGA . . . D 4 59.575 16.378 16.331 1 35.71 ? O2' OGA 802 A 1 
HETATM 8 O O3 OGA . . . D 4 59.092 18.984 12.321 1 39.2 ? O3 OGA 802 A 1 
HETATM 9 N N1 OGA . . . D 4 58.775 17.501 14.467 1 37.61 ? N1 OGA 802 A 1 
HETATM 10 O O4 OGA . . . D 4 60.039 17.392 11.169 1 41.91 ? O4 OGA 802 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#