data_5K06 # _model_server_result.job_id hfUpLJo1JvtECHP1vvlsTw _model_server_result.datetime_utc '2024-10-18 16:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5K06 # _exptl.entry_id 5K06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K06 _cell.length_a 106.651 _cell.length_b 106.651 _cell.length_c 59.312 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -159.9765 92.362475 19.770667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 66 1_555 A SG CYS 161 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 107 A CYS 106 1_555 A SG CYS 120 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5K06 _atom_sites.fract_transf_matrix[1][1] 0.009376 _atom_sites.fract_transf_matrix[1][2] 0.005413 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 3 MYR A 1 202 1 MYR MYR . D 4 SIN A 1 203 1 SIN SIN . E 5 HOH A 1 301 22 HOH HOH . E 5 HOH A 2 302 41 HOH HOH . E 5 HOH A 3 303 5 HOH HOH . E 5 HOH A 4 304 24 HOH HOH . E 5 HOH A 5 305 20 HOH HOH . E 5 HOH A 6 306 44 HOH HOH . E 5 HOH A 7 307 10 HOH HOH . E 5 HOH A 8 308 50 HOH HOH . E 5 HOH A 9 309 15 HOH HOH . E 5 HOH A 10 310 3 HOH HOH . E 5 HOH A 11 311 21 HOH HOH . E 5 HOH A 12 312 6 HOH HOH . E 5 HOH A 13 313 2 HOH HOH . E 5 HOH A 14 314 19 HOH HOH . E 5 HOH A 15 315 26 HOH HOH . E 5 HOH A 16 316 53 HOH HOH . E 5 HOH A 17 317 4 HOH HOH . E 5 HOH A 18 318 7 HOH HOH . E 5 HOH A 19 319 55 HOH HOH . E 5 HOH A 20 320 49 HOH HOH . E 5 HOH A 21 321 42 HOH HOH . E 5 HOH A 22 322 46 HOH HOH . E 5 HOH A 23 323 27 HOH HOH . E 5 HOH A 24 324 61 HOH HOH . E 5 HOH A 25 325 58 HOH HOH . E 5 HOH A 26 326 34 HOH HOH . E 5 HOH A 27 327 23 HOH HOH . E 5 HOH A 28 328 57 HOH HOH . E 5 HOH A 29 329 52 HOH HOH . E 5 HOH A 30 330 35 HOH HOH . E 5 HOH A 31 331 62 HOH HOH . E 5 HOH A 32 332 36 HOH HOH . E 5 HOH A 33 333 59 HOH HOH . E 5 HOH A 34 334 54 HOH HOH . E 5 HOH A 35 335 56 HOH HOH . E 5 HOH A 36 336 47 HOH HOH . E 5 HOH A 37 337 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -14.207 101.096 9.123 1 63.28 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -14.984 100.587 10.215 1 65.54 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -13.705 99.963 8.222 1 59.89 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -14.767 99.456 7.401 1 58.37 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -12.593 100.492 7.33 1 56.06 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -11.605 99.494 7.071 1 55.51 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #