data_5K06 # _model_server_result.job_id 3zkaWhOeeYy6BJnpEIoZSA _model_server_result.datetime_utc '2024-11-26 11:52:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5K06 # _exptl.entry_id 5K06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K06 _cell.length_a 106.651 _cell.length_b 106.651 _cell.length_c 59.312 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -159.9765 92.362475 19.770667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 66 1_555 A SG CYS 161 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 107 A CYS 106 1_555 A SG CYS 120 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 250 n n C1 O2 MYR sing 251 n n C1 C2 MYR sing 252 n n O2 HO2 MYR sing 253 n n C2 C3 MYR sing 254 n n C2 H21 MYR sing 255 n n C2 H22 MYR sing 256 n n C3 C4 MYR sing 257 n n C3 H31 MYR sing 258 n n C3 H32 MYR sing 259 n n C4 C5 MYR sing 260 n n C4 H41 MYR sing 261 n n C4 H42 MYR sing 262 n n C5 C6 MYR sing 263 n n C5 H51 MYR sing 264 n n C5 H52 MYR sing 265 n n C6 C7 MYR sing 266 n n C6 H61 MYR sing 267 n n C6 H62 MYR sing 268 n n C7 C8 MYR sing 269 n n C7 H71 MYR sing 270 n n C7 H72 MYR sing 271 n n C8 C9 MYR sing 272 n n C8 H81 MYR sing 273 n n C8 H82 MYR sing 274 n n C9 C10 MYR sing 275 n n C9 H91 MYR sing 276 n n C9 H92 MYR sing 277 n n C10 C11 MYR sing 278 n n C10 H101 MYR sing 279 n n C10 H102 MYR sing 280 n n C11 C12 MYR sing 281 n n C11 H111 MYR sing 282 n n C11 H112 MYR sing 283 n n C12 C13 MYR sing 284 n n C12 H121 MYR sing 285 n n C12 H122 MYR sing 286 n n C13 C14 MYR sing 287 n n C13 H131 MYR sing 288 n n C13 H132 MYR sing 289 n n C14 H141 MYR sing 290 n n C14 H142 MYR sing 291 n n C14 H143 MYR sing 292 n n # _atom_sites.entry_id 5K06 _atom_sites.fract_transf_matrix[1][1] 0.009376 _atom_sites.fract_transf_matrix[1][2] 0.005413 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 3 MYR A 1 202 1 MYR MYR . D 4 SIN A 1 203 1 SIN SIN . E 5 HOH A 1 301 22 HOH HOH . E 5 HOH A 2 302 41 HOH HOH . E 5 HOH A 3 303 5 HOH HOH . E 5 HOH A 4 304 24 HOH HOH . E 5 HOH A 5 305 20 HOH HOH . E 5 HOH A 6 306 44 HOH HOH . E 5 HOH A 7 307 10 HOH HOH . E 5 HOH A 8 308 50 HOH HOH . E 5 HOH A 9 309 15 HOH HOH . E 5 HOH A 10 310 3 HOH HOH . E 5 HOH A 11 311 21 HOH HOH . E 5 HOH A 12 312 6 HOH HOH . E 5 HOH A 13 313 2 HOH HOH . E 5 HOH A 14 314 19 HOH HOH . E 5 HOH A 15 315 26 HOH HOH . E 5 HOH A 16 316 53 HOH HOH . E 5 HOH A 17 317 4 HOH HOH . E 5 HOH A 18 318 7 HOH HOH . E 5 HOH A 19 319 55 HOH HOH . E 5 HOH A 20 320 49 HOH HOH . E 5 HOH A 21 321 42 HOH HOH . E 5 HOH A 22 322 46 HOH HOH . E 5 HOH A 23 323 27 HOH HOH . E 5 HOH A 24 324 61 HOH HOH . E 5 HOH A 25 325 58 HOH HOH . E 5 HOH A 26 326 34 HOH HOH . E 5 HOH A 27 327 23 HOH HOH . E 5 HOH A 28 328 57 HOH HOH . E 5 HOH A 29 329 52 HOH HOH . E 5 HOH A 30 330 35 HOH HOH . E 5 HOH A 31 331 62 HOH HOH . E 5 HOH A 32 332 36 HOH HOH . E 5 HOH A 33 333 59 HOH HOH . E 5 HOH A 34 334 54 HOH HOH . E 5 HOH A 35 335 56 HOH HOH . E 5 HOH A 36 336 47 HOH HOH . E 5 HOH A 37 337 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 -13.802 127.031 10.35 1 38.06 ? C1 MYR 202 A 1 HETATM 2 O O1 MYR . . . C 3 -14.247 128.183 10.388 1 40.7 ? O1 MYR 202 A 1 HETATM 3 O O2 MYR . . . C 3 -12.653 126.78 10.641 1 39.6 ? O2 MYR 202 A 1 HETATM 4 C C2 MYR . . . C 3 -14.712 125.949 9.903 1 41.82 ? C2 MYR 202 A 1 HETATM 5 C C3 MYR . . . C 3 -14.17 125.278 8.648 1 42.24 ? C3 MYR 202 A 1 HETATM 6 C C4 MYR . . . C 3 -14.879 123.957 8.395 1 43.59 ? C4 MYR 202 A 1 HETATM 7 C C5 MYR . . . C 3 -16.304 124.127 7.895 1 44.77 ? C5 MYR 202 A 1 HETATM 8 C C6 MYR . . . C 3 -16.505 123.391 6.57 1 48.8 ? C6 MYR 202 A 1 HETATM 9 C C7 MYR . . . C 3 -16.246 121.882 6.659 1 49.16 ? C7 MYR 202 A 1 HETATM 10 C C8 MYR . . . C 3 -17.284 121.056 5.898 1 47.9 ? C8 MYR 202 A 1 HETATM 11 C C9 MYR . . . C 3 -16.752 120.394 4.635 1 46.39 ? C9 MYR 202 A 1 HETATM 12 C C10 MYR . . . C 3 -16.932 118.889 4.737 1 44.37 ? C10 MYR 202 A 1 HETATM 13 C C11 MYR . . . C 3 -17.378 118.228 3.442 1 43.08 ? C11 MYR 202 A 1 HETATM 14 C C12 MYR . . . C 3 -17.218 116.717 3.638 1 43.11 ? C12 MYR 202 A 1 HETATM 15 C C13 MYR . . . C 3 -17.878 115.839 2.578 1 42.64 ? C13 MYR 202 A 1 HETATM 16 C C14 MYR . . . C 3 -17.547 114.378 2.828 1 43.09 ? C14 MYR 202 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #