data_5K0H # _model_server_result.job_id 1e4gKy0hrYrEH52D6R5FVA _model_server_result.datetime_utc '2024-11-02 00:24:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5K0H # _exptl.entry_id 5K0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K0H _cell.length_a 56.28 _cell.length_b 72.4 _cell.length_c 77.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 45 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 2 B CYS 1 1_555 B SG CYS 13 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 9 B CYS 8 1_555 B SG CYS 22 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 B SG CYS 24 B CYS 23 1_555 B SG CYS 37 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A O TYR 173 A TYR 185 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 A O ASP 174 A ASP 185 1_555 D CA CA . A CA 302 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc7 A O ARG 211 A ARG 222 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc8 A O LYS 214 A LYS 224 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc9 C CA CA . A CA 301 1_555 F O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 D CA CA . A CA 302 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K0H _atom_sites.fract_transf_matrix[1][1] 0.017768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA2 . D 3 CA A 1 302 2 CA CA2 . E 4 6PK A 1 303 1 6PK INH . F 5 HOH A 1 401 26 HOH TIP . F 5 HOH A 2 402 102 HOH TIP . F 5 HOH A 3 403 97 HOH TIP . F 5 HOH A 4 404 2 HOH TIP . F 5 HOH A 5 405 67 HOH TIP . F 5 HOH A 6 406 90 HOH TIP . F 5 HOH A 7 407 114 HOH TIP . F 5 HOH A 8 408 113 HOH TIP . F 5 HOH A 9 409 117 HOH TIP . F 5 HOH A 10 410 142 HOH TIP . F 5 HOH A 11 411 118 HOH TIP . F 5 HOH A 12 412 1 HOH TIP . F 5 HOH A 13 413 110 HOH TIP . F 5 HOH A 14 414 77 HOH TIP . F 5 HOH A 15 415 44 HOH TIP . F 5 HOH A 16 416 20 HOH TIP . F 5 HOH A 17 417 61 HOH TIP . F 5 HOH A 18 418 56 HOH TIP . F 5 HOH A 19 419 91 HOH TIP . F 5 HOH A 20 420 39 HOH TIP . F 5 HOH A 21 421 17 HOH TIP . F 5 HOH A 22 422 124 HOH TIP . F 5 HOH A 23 423 57 HOH TIP . F 5 HOH A 24 424 136 HOH TIP . F 5 HOH A 25 425 19 HOH TIP . F 5 HOH A 26 426 10 HOH TIP . F 5 HOH A 27 427 92 HOH TIP . F 5 HOH A 28 428 25 HOH TIP . F 5 HOH A 29 429 38 HOH TIP . F 5 HOH A 30 430 41 HOH TIP . F 5 HOH A 31 431 33 HOH TIP . F 5 HOH A 32 432 103 HOH TIP . F 5 HOH A 33 433 93 HOH TIP . F 5 HOH A 34 434 80 HOH TIP . F 5 HOH A 35 435 78 HOH TIP . F 5 HOH A 36 436 65 HOH TIP . F 5 HOH A 37 437 40 HOH TIP . F 5 HOH A 38 438 131 HOH TIP . F 5 HOH A 39 439 49 HOH TIP . F 5 HOH A 40 440 27 HOH TIP . F 5 HOH A 41 441 121 HOH TIP . F 5 HOH A 42 442 55 HOH TIP . F 5 HOH A 43 443 83 HOH TIP . F 5 HOH A 44 444 28 HOH TIP . F 5 HOH A 45 445 109 HOH TIP . F 5 HOH A 46 446 88 HOH TIP . F 5 HOH A 47 447 81 HOH TIP . F 5 HOH A 48 448 12 HOH TIP . F 5 HOH A 49 449 13 HOH TIP . F 5 HOH A 50 450 71 HOH TIP . F 5 HOH A 51 451 58 HOH TIP . F 5 HOH A 52 452 21 HOH TIP . F 5 HOH A 53 453 89 HOH TIP . F 5 HOH A 54 454 135 HOH TIP . F 5 HOH A 55 455 30 HOH TIP . F 5 HOH A 56 456 7 HOH TIP . F 5 HOH A 57 457 35 HOH TIP . F 5 HOH A 58 458 32 HOH TIP . F 5 HOH A 59 459 134 HOH TIP . F 5 HOH A 60 460 22 HOH TIP . F 5 HOH A 61 461 64 HOH TIP . F 5 HOH A 62 462 3 HOH TIP . F 5 HOH A 63 463 6 HOH TIP . F 5 HOH A 64 464 9 HOH TIP . F 5 HOH A 65 465 86 HOH TIP . F 5 HOH A 66 466 18 HOH TIP . F 5 HOH A 67 467 68 HOH TIP . F 5 HOH A 68 468 23 HOH TIP . F 5 HOH A 69 469 108 HOH TIP . F 5 HOH A 70 470 105 HOH TIP . F 5 HOH A 71 471 84 HOH TIP . F 5 HOH A 72 472 24 HOH TIP . F 5 HOH A 73 473 82 HOH TIP . F 5 HOH A 74 474 70 HOH TIP . F 5 HOH A 75 475 60 HOH TIP . F 5 HOH A 76 476 16 HOH TIP . F 5 HOH A 77 477 138 HOH TIP . F 5 HOH A 78 478 53 HOH TIP . F 5 HOH A 79 479 119 HOH TIP . F 5 HOH A 80 480 116 HOH TIP . F 5 HOH A 81 481 75 HOH TIP . F 5 HOH A 82 482 63 HOH TIP . F 5 HOH A 83 483 79 HOH TIP . F 5 HOH A 84 484 112 HOH TIP . F 5 HOH A 85 485 127 HOH TIP . F 5 HOH A 86 486 14 HOH TIP . F 5 HOH A 87 487 34 HOH TIP . F 5 HOH A 88 488 43 HOH TIP . F 5 HOH A 89 489 36 HOH TIP . F 5 HOH A 90 490 87 HOH TIP . F 5 HOH A 91 491 85 HOH TIP . F 5 HOH A 92 492 4 HOH TIP . F 5 HOH A 93 493 139 HOH TIP . F 5 HOH A 94 494 37 HOH TIP . F 5 HOH A 95 495 51 HOH TIP . F 5 HOH A 96 496 141 HOH TIP . F 5 HOH A 97 497 100 HOH TIP . F 5 HOH A 98 498 133 HOH TIP . F 5 HOH A 99 499 66 HOH TIP . F 5 HOH A 100 500 48 HOH TIP . F 5 HOH A 101 501 129 HOH TIP . F 5 HOH A 102 502 140 HOH TIP . F 5 HOH A 103 503 143 HOH TIP . F 5 HOH A 104 504 45 HOH TIP . F 5 HOH A 105 505 144 HOH TIP . G 5 HOH B 1 101 15 HOH TIP . G 5 HOH B 2 102 94 HOH TIP . G 5 HOH B 3 103 101 HOH TIP . G 5 HOH B 4 104 111 HOH TIP . G 5 HOH B 5 105 99 HOH TIP . G 5 HOH B 6 106 96 HOH TIP . G 5 HOH B 7 107 54 HOH TIP . G 5 HOH B 8 108 69 HOH TIP . G 5 HOH B 9 109 107 HOH TIP . G 5 HOH B 10 110 31 HOH TIP . G 5 HOH B 11 111 11 HOH TIP . G 5 HOH B 12 112 62 HOH TIP . G 5 HOH B 13 113 5 HOH TIP . G 5 HOH B 14 114 73 HOH TIP . G 5 HOH B 15 115 106 HOH TIP . G 5 HOH B 16 116 29 HOH TIP . G 5 HOH B 17 117 47 HOH TIP . G 5 HOH B 18 118 76 HOH TIP . G 5 HOH B 19 119 120 HOH TIP . G 5 HOH B 20 120 72 HOH TIP . G 5 HOH B 21 121 123 HOH TIP . G 5 HOH B 22 122 59 HOH TIP . G 5 HOH B 23 123 128 HOH TIP . G 5 HOH B 24 124 95 HOH TIP . G 5 HOH B 25 125 50 HOH TIP . G 5 HOH B 26 126 125 HOH TIP . G 5 HOH B 27 127 122 HOH TIP . G 5 HOH B 28 128 74 HOH TIP . G 5 HOH B 29 129 52 HOH TIP . G 5 HOH B 30 130 8 HOH TIP . G 5 HOH B 31 131 46 HOH TIP . G 5 HOH B 32 132 130 HOH TIP . G 5 HOH B 33 133 132 HOH TIP . G 5 HOH B 34 134 115 HOH TIP . G 5 HOH B 35 135 126 HOH TIP . G 5 HOH B 36 136 104 HOH TIP . G 5 HOH B 37 137 98 HOH TIP . G 5 HOH B 38 138 137 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.909 _atom_site.Cartn_y 1.225 _atom_site.Cartn_z 34.083 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #