data_5K0I # _model_server_result.job_id 962WJjtyey7gUx0QlWuAVA _model_server_result.datetime_utc '2024-11-13 00:04:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5K0I # _exptl.entry_id 5K0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.537 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,5-anhydro-2,3,4-trideoxy-3-{[(4S)-3,3-dimethyl-1-(8-methylquinolin-2-yl)piperidine-4-carbonyl]amino}-D-erythro-hexitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K0I _cell.length_a 77.444 _cell.length_b 77.444 _cell.length_c 123.565 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 60 A TYR 58 1_555 A N CSO 61 A CSO 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSO 61 A CSO 59 1_555 A N ARG 62 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C24 H33 N3 O3' _chem_comp.formula_weight 411.537 _chem_comp.id 6PW _chem_comp.mon_nstd_flag . _chem_comp.name 1,5-anhydro-2,3,4-trideoxy-3-{[(4S)-3,3-dimethyl-1-(8-methylquinolin-2-yl)piperidine-4-carbonyl]amino}-D-erythro-hexitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K0I _atom_sites.fract_transf_matrix[1][1] 0.012913 _atom_sites.fract_transf_matrix[1][2] 0.007455 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6PW A 1 201 1 6PW SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 5 PG4 A 1 206 5 PG4 PG4 . H 6 HOH A 1 301 4 HOH HOH . H 6 HOH A 2 302 5 HOH HOH . H 6 HOH A 3 303 78 HOH HOH . H 6 HOH A 4 304 69 HOH HOH . H 6 HOH A 5 305 31 HOH HOH . H 6 HOH A 6 306 30 HOH HOH . H 6 HOH A 7 307 12 HOH HOH . H 6 HOH A 8 308 8 HOH HOH . H 6 HOH A 9 309 55 HOH HOH . H 6 HOH A 10 310 29 HOH HOH . H 6 HOH A 11 311 6 HOH HOH . H 6 HOH A 12 312 49 HOH HOH . H 6 HOH A 13 313 7 HOH HOH . H 6 HOH A 14 314 10 HOH HOH . H 6 HOH A 15 315 47 HOH HOH . H 6 HOH A 16 316 77 HOH HOH . H 6 HOH A 17 317 67 HOH HOH . H 6 HOH A 18 318 92 HOH HOH . H 6 HOH A 19 319 126 HOH HOH . H 6 HOH A 20 320 90 HOH HOH . H 6 HOH A 21 321 23 HOH HOH . H 6 HOH A 22 322 15 HOH HOH . H 6 HOH A 23 323 62 HOH HOH . H 6 HOH A 24 324 106 HOH HOH . H 6 HOH A 25 325 34 HOH HOH . H 6 HOH A 26 326 35 HOH HOH . H 6 HOH A 27 327 42 HOH HOH . H 6 HOH A 28 328 25 HOH HOH . H 6 HOH A 29 329 9 HOH HOH . H 6 HOH A 30 330 74 HOH HOH . H 6 HOH A 31 331 11 HOH HOH . H 6 HOH A 32 332 79 HOH HOH . H 6 HOH A 33 333 80 HOH HOH . H 6 HOH A 34 334 26 HOH HOH . H 6 HOH A 35 335 53 HOH HOH . H 6 HOH A 36 336 16 HOH HOH . H 6 HOH A 37 337 28 HOH HOH . H 6 HOH A 38 338 57 HOH HOH . H 6 HOH A 39 339 71 HOH HOH . H 6 HOH A 40 340 43 HOH HOH . H 6 HOH A 41 341 27 HOH HOH . H 6 HOH A 42 342 85 HOH HOH . H 6 HOH A 43 343 58 HOH HOH . H 6 HOH A 44 344 56 HOH HOH . H 6 HOH A 45 345 60 HOH HOH . H 6 HOH A 46 346 64 HOH HOH . H 6 HOH A 47 347 45 HOH HOH . H 6 HOH A 48 348 18 HOH HOH . H 6 HOH A 49 349 13 HOH HOH . H 6 HOH A 50 350 19 HOH HOH . H 6 HOH A 51 351 44 HOH HOH . H 6 HOH A 52 352 54 HOH HOH . H 6 HOH A 53 353 93 HOH HOH . H 6 HOH A 54 354 37 HOH HOH . H 6 HOH A 55 355 36 HOH HOH . H 6 HOH A 56 356 32 HOH HOH . H 6 HOH A 57 357 33 HOH HOH . H 6 HOH A 58 358 109 HOH HOH . H 6 HOH A 59 359 105 HOH HOH . H 6 HOH A 60 360 83 HOH HOH . H 6 HOH A 61 361 82 HOH HOH . H 6 HOH A 62 362 98 HOH HOH . H 6 HOH A 63 363 96 HOH HOH . H 6 HOH A 64 364 84 HOH HOH . H 6 HOH A 65 365 41 HOH HOH . H 6 HOH A 66 366 40 HOH HOH . H 6 HOH A 67 367 124 HOH HOH . H 6 HOH A 68 368 20 HOH HOH . H 6 HOH A 69 369 46 HOH HOH . H 6 HOH A 70 370 38 HOH HOH . H 6 HOH A 71 371 17 HOH HOH . H 6 HOH A 72 372 68 HOH HOH . H 6 HOH A 73 373 1 HOH HOH . H 6 HOH A 74 374 14 HOH HOH . H 6 HOH A 75 375 21 HOH HOH . H 6 HOH A 76 376 52 HOH HOH . H 6 HOH A 77 377 24 HOH HOH . H 6 HOH A 78 378 22 HOH HOH . H 6 HOH A 79 379 89 HOH HOH . H 6 HOH A 80 380 59 HOH HOH . H 6 HOH A 81 381 128 HOH HOH . H 6 HOH A 82 382 70 HOH HOH . H 6 HOH A 83 383 72 HOH HOH . H 6 HOH A 84 384 95 HOH HOH . H 6 HOH A 85 385 81 HOH HOH . H 6 HOH A 86 386 76 HOH HOH . H 6 HOH A 87 387 114 HOH HOH . H 6 HOH A 88 388 39 HOH HOH . H 6 HOH A 89 389 94 HOH HOH . H 6 HOH A 90 390 103 HOH HOH . H 6 HOH A 91 391 101 HOH HOH . H 6 HOH A 92 392 122 HOH HOH . H 6 HOH A 93 393 63 HOH HOH . H 6 HOH A 94 394 99 HOH HOH . H 6 HOH A 95 395 133 HOH HOH . H 6 HOH A 96 396 130 HOH HOH . H 6 HOH A 97 397 131 HOH HOH . H 6 HOH A 98 398 73 HOH HOH . H 6 HOH A 99 399 75 HOH HOH . H 6 HOH A 100 400 66 HOH HOH . H 6 HOH A 101 401 125 HOH HOH . H 6 HOH A 102 402 111 HOH HOH . H 6 HOH A 103 403 121 HOH HOH . H 6 HOH A 104 404 48 HOH HOH . H 6 HOH A 105 405 129 HOH HOH . H 6 HOH A 106 406 107 HOH HOH . H 6 HOH A 107 407 102 HOH HOH . H 6 HOH A 108 408 51 HOH HOH . H 6 HOH A 109 409 110 HOH HOH . H 6 HOH A 110 410 2 HOH HOH . H 6 HOH A 111 411 65 HOH HOH . H 6 HOH A 112 412 88 HOH HOH . H 6 HOH A 113 413 61 HOH HOH . H 6 HOH A 114 414 115 HOH HOH . H 6 HOH A 115 415 104 HOH HOH . H 6 HOH A 116 416 123 HOH HOH . H 6 HOH A 117 417 132 HOH HOH . H 6 HOH A 118 418 97 HOH HOH . H 6 HOH A 119 419 50 HOH HOH . H 6 HOH A 120 420 127 HOH HOH . H 6 HOH A 121 421 86 HOH HOH . H 6 HOH A 122 422 112 HOH HOH . H 6 HOH A 123 423 3 HOH HOH . H 6 HOH A 124 424 113 HOH HOH . H 6 HOH A 125 425 116 HOH HOH . H 6 HOH A 126 426 108 HOH HOH . H 6 HOH A 127 427 120 HOH HOH . H 6 HOH A 128 428 100 HOH HOH . H 6 HOH A 129 429 87 HOH HOH . H 6 HOH A 130 430 118 HOH HOH . H 6 HOH A 131 431 91 HOH HOH . H 6 HOH A 132 432 117 HOH HOH . H 6 HOH A 133 433 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6PW . . . B 2 12.434 14.299 34.035 1 19.73 ? O1 6PW 201 A 1 HETATM 2 C C7 6PW . . . B 2 6.737 14.482 20.777 1 12.57 ? C7 6PW 201 A 1 HETATM 3 O O2 6PW . . . B 2 13.778 16.881 33.927 1 30.01 ? O2 6PW 201 A 1 HETATM 4 C C6 6PW . . . B 2 7.599 15.337 20.106 1 12.97 ? C6 6PW 201 A 1 HETATM 5 C C1 6PW . . . B 2 7.999 14.753 22.807 1 11.5 ? C1 6PW 201 A 1 HETATM 6 N N1 6PW . . . B 2 9.304 14.621 26.114 1 12.09 ? N1 6PW 201 A 1 HETATM 7 C C5 6PW . . . B 2 8.663 15.891 20.755 1 13.11 ? C5 6PW 201 A 1 HETATM 8 C C4 6PW . . . B 2 10.131 15.835 24.175 1 12.7 ? C4 6PW 201 A 1 HETATM 9 C C3 6PW . . . B 2 9.972 16.15 22.863 1 13.52 ? C3 6PW 201 A 1 HETATM 10 C C2 6PW . . . B 2 8.893 15.618 22.125 1 12.73 ? C2 6PW 201 A 1 HETATM 11 O O 6PW . . . B 2 8.691 16.294 30.563 1 13.37 ? O 6PW 201 A 1 HETATM 12 C C17 6PW . . . B 2 9.273 15.228 30.394 1 12.6 ? C17 6PW 201 A 1 HETATM 13 N N2 6PW . . . B 2 9.834 14.545 31.398 1 12.45 ? N2 6PW 201 A 1 HETATM 14 C C18 6PW . . . B 2 9.999 15.115 32.739 1 14.59 ? C18 6PW 201 A 1 HETATM 15 C C22 6PW . . . B 2 10.025 14.032 33.818 1 15.79 ? C22 6PW 201 A 1 HETATM 16 C C21 6PW . . . B 2 11.364 13.342 33.957 1 17.09 ? C21 6PW 201 A 1 HETATM 17 C C20 6PW . . . B 2 12.508 15.103 32.858 1 20 ? C20 6PW 201 A 1 HETATM 18 C C23 6PW . . . B 2 13.803 15.87 32.932 1 26.39 ? C23 6PW 201 A 1 HETATM 19 C C19 6PW . . . B 2 11.267 15.971 32.798 1 17.51 ? C19 6PW 201 A 1 HETATM 20 C C14 6PW . . . B 2 9.406 14.601 29.019 1 12.24 ? C14 6PW 201 A 1 HETATM 21 C C11 6PW . . . B 2 10.564 15.243 28.189 1 11.56 ? C11 6PW 201 A 1 HETATM 22 C C13 6PW . . . B 2 10.395 16.759 27.984 1 13.7 ? C13 6PW 201 A 1 HETATM 23 C C12 6PW . . . B 2 11.928 15.015 28.852 1 13.37 ? C12 6PW 201 A 1 HETATM 24 C C10 6PW . . . B 2 10.592 14.573 26.807 1 12.5 ? C10 6PW 201 A 1 HETATM 25 C C15 6PW . . . B 2 8.062 14.606 28.265 1 12.27 ? C15 6PW 201 A 1 HETATM 26 C C16 6PW . . . B 2 8.213 13.991 26.865 1 12.32 ? C16 6PW 201 A 1 HETATM 27 C C 6PW . . . B 2 9.198 14.973 24.783 1 11.87 ? C 6PW 201 A 1 HETATM 28 C C8 6PW . . . B 2 6.898 14.17 22.112 1 11.43 ? C8 6PW 201 A 1 HETATM 29 C C9 6PW . . . B 2 5.954 13.237 22.829 1 12.41 ? C9 6PW 201 A 1 HETATM 30 N N 6PW . . . B 2 8.166 14.448 24.141 1 11.43 ? N 6PW 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #