data_5K0T # _model_server_result.job_id 15i97s4MmP2kq9nyH2JvmA _model_server_result.datetime_utc '2024-10-14 07:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5K0T # _exptl.entry_id 5K0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.839 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}-3-phenylurea _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.46 _cell.angle_beta 88.09 _cell.angle_gamma 99.72 _cell.entry_id 5K0T _cell.length_a 45.16 _cell.length_b 99.65 _cell.length_c 104.3 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,O 1 1 B,I,J,K,L,P 2 1 C,M,N,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 M N N # _chem_comp.formula 'C18 H22 Cl N3 O2' _chem_comp.formula_weight 347.839 _chem_comp.id 415 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}-3-phenylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAE 415 doub 1 n y CAD CAF 415 sing 2 n y CAE CAG 415 sing 3 n y CAF CAH 415 doub 4 n y CAG CAW 415 doub 5 n y CAH CAW 415 sing 6 n y CAW NAR 415 sing 7 n n NAR CAT 415 sing 8 n n OAB CAT 415 doub 9 n n CAT NAQ 415 sing 10 n n NAQ CAN 415 sing 11 n n CAN CAL 415 sing 12 n n CAL CAM 415 sing 13 n n CAM NAP 415 sing 14 n n NAP CAO 415 sing 15 n n CAA OAS 415 sing 16 n n CLC CAU 415 sing 17 n n CAU CAI 415 doub 18 n y CAU CAJ 415 sing 19 n y CAI CAV 415 sing 20 n y CAJ CAX 415 doub 21 n y CAV CAO 415 sing 22 n n CAV CAK 415 doub 23 n y CAX CAK 415 sing 24 n y CAX OAS 415 sing 25 n n CAA H1 415 sing 26 n n CAA H2 415 sing 27 n n CAA H3 415 sing 28 n n CAK H4 415 sing 29 n n CAJ H5 415 sing 30 n n CAI H6 415 sing 31 n n CAO H7 415 sing 32 n n CAO H8 415 sing 33 n n NAP H9 415 sing 34 n n CAM H11 415 sing 35 n n CAM H12 415 sing 36 n n CAL H13 415 sing 37 n n CAL H14 415 sing 38 n n CAN H15 415 sing 39 n n CAN H16 415 sing 40 n n NAQ H17 415 sing 41 n n NAR H18 415 sing 42 n n CAG H19 415 sing 43 n n CAE H20 415 sing 44 n n CAD H21 415 sing 45 n n CAF H22 415 sing 46 n n CAH H23 415 sing 47 n n # _atom_sites.entry_id 5K0T _atom_sites.fract_transf_matrix[1][1] 0.022143 _atom_sites.fract_transf_matrix[1][2] 0.003795 _atom_sites.fract_transf_matrix[1][3] 0.000627 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010181 _atom_sites.fract_transf_matrix[2][3] 0.003793 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 415 A 1 601 600 415 415 . E 3 EDO A 1 602 1 EDO EDO . F 3 EDO A 1 603 2 EDO EDO . G 3 EDO A 1 604 4 EDO EDO . H 3 EDO A 1 605 15 EDO EDO . I 2 415 B 1 601 600 415 415 . J 3 EDO B 1 602 5 EDO EDO . K 3 EDO B 1 603 12 EDO EDO . L 3 EDO B 1 604 13 EDO EDO . M 2 415 C 1 601 600 415 415 . N 3 EDO C 1 602 8 EDO EDO . O 4 HOH A 1 701 9 HOH HOH . O 4 HOH A 2 702 95 HOH HOH . O 4 HOH A 3 703 18 HOH HOH . O 4 HOH A 4 704 4 HOH HOH . O 4 HOH A 5 705 135 HOH HOH . O 4 HOH A 6 706 14 HOH HOH . O 4 HOH A 7 707 136 HOH HOH . O 4 HOH A 8 708 11 HOH HOH . O 4 HOH A 9 709 16 HOH HOH . O 4 HOH A 10 710 23 HOH HOH . O 4 HOH A 11 711 5 HOH HOH . O 4 HOH A 12 712 169 HOH HOH . O 4 HOH A 13 713 143 HOH HOH . O 4 HOH A 14 714 157 HOH HOH . O 4 HOH A 15 715 98 HOH HOH . O 4 HOH A 16 716 22 HOH HOH . O 4 HOH A 17 717 140 HOH HOH . O 4 HOH A 18 718 93 HOH HOH . O 4 HOH A 19 719 8 HOH HOH . O 4 HOH A 20 720 94 HOH HOH . O 4 HOH A 21 721 21 HOH HOH . O 4 HOH A 22 722 141 HOH HOH . O 4 HOH A 23 723 138 HOH HOH . O 4 HOH A 24 724 134 HOH HOH . O 4 HOH A 25 725 7 HOH HOH . O 4 HOH A 26 726 6 HOH HOH . O 4 HOH A 27 727 27 HOH HOH . O 4 HOH A 28 728 102 HOH HOH . O 4 HOH A 29 729 103 HOH HOH . O 4 HOH A 30 730 13 HOH HOH . O 4 HOH A 31 731 25 HOH HOH . O 4 HOH A 32 732 10 HOH HOH . O 4 HOH A 33 733 24 HOH HOH . O 4 HOH A 34 734 142 HOH HOH . O 4 HOH A 35 735 1 HOH HOH . O 4 HOH A 36 736 26 HOH HOH . O 4 HOH A 37 737 2 HOH HOH . O 4 HOH A 38 738 101 HOH HOH . O 4 HOH A 39 739 155 HOH HOH . O 4 HOH A 40 740 3 HOH HOH . O 4 HOH A 41 741 99 HOH HOH . O 4 HOH A 42 742 19 HOH HOH . O 4 HOH A 43 743 139 HOH HOH . O 4 HOH A 44 744 12 HOH HOH . O 4 HOH A 45 745 122 HOH HOH . O 4 HOH A 46 746 163 HOH HOH . O 4 HOH A 47 747 15 HOH HOH . O 4 HOH A 48 748 20 HOH HOH . O 4 HOH A 49 749 137 HOH HOH . O 4 HOH A 50 750 17 HOH HOH . O 4 HOH A 51 751 100 HOH HOH . O 4 HOH A 52 752 96 HOH HOH . P 4 HOH B 1 701 65 HOH HOH . P 4 HOH B 2 702 41 HOH HOH . P 4 HOH B 3 703 64 HOH HOH . P 4 HOH B 4 704 51 HOH HOH . P 4 HOH B 5 705 147 HOH HOH . P 4 HOH B 6 706 29 HOH HOH . P 4 HOH B 7 707 36 HOH HOH . P 4 HOH B 8 708 112 HOH HOH . P 4 HOH B 9 709 66 HOH HOH . P 4 HOH B 10 710 110 HOH HOH . P 4 HOH B 11 711 72 HOH HOH . P 4 HOH B 12 712 165 HOH HOH . P 4 HOH B 13 713 109 HOH HOH . P 4 HOH B 14 714 59 HOH HOH . P 4 HOH B 15 715 32 HOH HOH . P 4 HOH B 16 716 30 HOH HOH . P 4 HOH B 17 717 144 HOH HOH . P 4 HOH B 18 718 46 HOH HOH . P 4 HOH B 19 719 145 HOH HOH . P 4 HOH B 20 720 43 HOH HOH . P 4 HOH B 21 721 28 HOH HOH . P 4 HOH B 22 722 97 HOH HOH . P 4 HOH B 23 723 40 HOH HOH . P 4 HOH B 24 724 52 HOH HOH . P 4 HOH B 25 725 104 HOH HOH . P 4 HOH B 26 726 153 HOH HOH . P 4 HOH B 27 727 67 HOH HOH . P 4 HOH B 28 728 44 HOH HOH . P 4 HOH B 29 729 106 HOH HOH . P 4 HOH B 30 730 148 HOH HOH . P 4 HOH B 31 731 107 HOH HOH . P 4 HOH B 32 732 33 HOH HOH . P 4 HOH B 33 733 105 HOH HOH . P 4 HOH B 34 734 160 HOH HOH . P 4 HOH B 35 735 60 HOH HOH . P 4 HOH B 36 736 152 HOH HOH . P 4 HOH B 37 737 45 HOH HOH . P 4 HOH B 38 738 37 HOH HOH . P 4 HOH B 39 739 68 HOH HOH . P 4 HOH B 40 740 42 HOH HOH . P 4 HOH B 41 741 50 HOH HOH . P 4 HOH B 42 742 108 HOH HOH . P 4 HOH B 43 743 111 HOH HOH . P 4 HOH B 44 744 39 HOH HOH . P 4 HOH B 45 745 57 HOH HOH . P 4 HOH B 46 746 149 HOH HOH . P 4 HOH B 47 747 146 HOH HOH . P 4 HOH B 48 748 63 HOH HOH . P 4 HOH B 49 749 154 HOH HOH . P 4 HOH B 50 750 49 HOH HOH . P 4 HOH B 51 751 150 HOH HOH . P 4 HOH B 52 752 54 HOH HOH . P 4 HOH B 53 753 53 HOH HOH . P 4 HOH B 54 754 34 HOH HOH . P 4 HOH B 55 755 62 HOH HOH . P 4 HOH B 56 756 38 HOH HOH . P 4 HOH B 57 757 61 HOH HOH . P 4 HOH B 58 758 55 HOH HOH . P 4 HOH B 59 759 56 HOH HOH . P 4 HOH B 60 760 164 HOH HOH . P 4 HOH B 61 761 58 HOH HOH . P 4 HOH B 62 762 31 HOH HOH . P 4 HOH B 63 763 113 HOH HOH . P 4 HOH B 64 764 35 HOH HOH . P 4 HOH B 65 765 162 HOH HOH . P 4 HOH B 66 766 48 HOH HOH . P 4 HOH B 67 767 47 HOH HOH . P 4 HOH B 68 768 161 HOH HOH . P 4 HOH B 69 769 151 HOH HOH . Q 4 HOH C 1 701 83 HOH HOH . Q 4 HOH C 2 702 117 HOH HOH . Q 4 HOH C 3 703 128 HOH HOH . Q 4 HOH C 4 704 125 HOH HOH . Q 4 HOH C 5 705 168 HOH HOH . Q 4 HOH C 6 706 124 HOH HOH . Q 4 HOH C 7 707 75 HOH HOH . Q 4 HOH C 8 708 88 HOH HOH . Q 4 HOH C 9 709 92 HOH HOH . Q 4 HOH C 10 710 69 HOH HOH . Q 4 HOH C 11 711 115 HOH HOH . Q 4 HOH C 12 712 116 HOH HOH . Q 4 HOH C 13 713 131 HOH HOH . Q 4 HOH C 14 714 89 HOH HOH . Q 4 HOH C 15 715 70 HOH HOH . Q 4 HOH C 16 716 87 HOH HOH . Q 4 HOH C 17 717 85 HOH HOH . Q 4 HOH C 18 718 71 HOH HOH . Q 4 HOH C 19 719 120 HOH HOH . Q 4 HOH C 20 720 90 HOH HOH . Q 4 HOH C 21 721 86 HOH HOH . Q 4 HOH C 22 722 129 HOH HOH . Q 4 HOH C 23 723 73 HOH HOH . Q 4 HOH C 24 724 91 HOH HOH . Q 4 HOH C 25 725 123 HOH HOH . Q 4 HOH C 26 726 76 HOH HOH . Q 4 HOH C 27 727 84 HOH HOH . Q 4 HOH C 28 728 158 HOH HOH . Q 4 HOH C 29 729 121 HOH HOH . Q 4 HOH C 30 730 133 HOH HOH . Q 4 HOH C 31 731 132 HOH HOH . Q 4 HOH C 32 732 126 HOH HOH . Q 4 HOH C 33 733 74 HOH HOH . Q 4 HOH C 34 734 81 HOH HOH . Q 4 HOH C 35 735 118 HOH HOH . Q 4 HOH C 36 736 159 HOH HOH . Q 4 HOH C 37 737 119 HOH HOH . Q 4 HOH C 38 738 79 HOH HOH . Q 4 HOH C 39 739 127 HOH HOH . Q 4 HOH C 40 740 156 HOH HOH . Q 4 HOH C 41 741 80 HOH HOH . Q 4 HOH C 42 742 166 HOH HOH . Q 4 HOH C 43 743 77 HOH HOH . Q 4 HOH C 44 744 114 HOH HOH . Q 4 HOH C 45 745 167 HOH HOH . Q 4 HOH C 46 746 82 HOH HOH . Q 4 HOH C 47 747 130 HOH HOH . Q 4 HOH C 48 748 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 415 . . . D 2 27.53 9.968 9.01 1 57.24 ? CAA 415 601 A 1 HETATM 2 O OAS 415 . . . D 2 28.229 11.023 9.653 1 58.89 ? OAS 415 601 A 1 HETATM 3 C CAX 415 . . . D 2 28.047 11.002 11.034 1 59.53 ? CAX 415 601 A 1 HETATM 4 C CAK 415 . . . D 2 29.016 10.476 11.845 1 59.65 ? CAK 415 601 A 1 HETATM 5 C CAJ 415 . . . D 2 26.83 11.51 11.588 1 59.81 ? CAJ 415 601 A 1 HETATM 6 C CAU 415 . . . D 2 26.637 11.482 12.968 1 60.25 ? CAU 415 601 A 1 HETATM 7 CL CLC 415 . . . D 2 25.175 12.108 13.593 1 62.68 ? CLC 415 601 A 1 HETATM 8 C CAI 415 . . . D 2 27.644 10.944 13.815 1 60.42 ? CAI 415 601 A 1 HETATM 9 C CAV 415 . . . D 2 28.812 10.451 13.273 1 60.3 ? CAV 415 601 A 1 HETATM 10 C CAO 415 . . . D 2 29.9 9.866 14.158 1 60.69 ? CAO 415 601 A 1 HETATM 11 N NAP 415 . . . D 2 29.578 8.482 14.451 1 61.85 ? NAP 415 601 A 1 HETATM 12 C CAM 415 . . . D 2 30.675 7.601 14.423 1 62.45 ? CAM 415 601 A 1 HETATM 13 C CAL 415 . . . D 2 30.817 6.902 13 1 61.42 ? CAL 415 601 A 1 HETATM 14 C CAN 415 . . . D 2 31.003 5.349 13.093 1 60.39 ? CAN 415 601 A 1 HETATM 15 N NAQ 415 . . . D 2 29.792 4.681 12.873 1 59.56 ? NAQ 415 601 A 1 HETATM 16 C CAT 415 . . . D 2 29.441 4.059 11.641 1 58.29 ? CAT 415 601 A 1 HETATM 17 O OAB 415 . . . D 2 30.233 4.092 10.652 1 59.45 ? OAB 415 601 A 1 HETATM 18 N NAR 415 . . . D 2 28.142 3.392 11.558 1 57.25 ? NAR 415 601 A 1 HETATM 19 C CAW 415 . . . D 2 27.642 2.741 10.383 1 55.85 ? CAW 415 601 A 1 HETATM 20 C CAG 415 . . . D 2 26.299 2.871 10.107 1 54.94 ? CAG 415 601 A 1 HETATM 21 C CAE 415 . . . D 2 25.72 2.251 8.939 1 54.64 ? CAE 415 601 A 1 HETATM 22 C CAD 415 . . . D 2 26.528 1.507 8.072 1 54.5 ? CAD 415 601 A 1 HETATM 23 C CAF 415 . . . D 2 27.896 1.37 8.343 1 54.81 ? CAF 415 601 A 1 HETATM 24 C CAH 415 . . . D 2 28.465 1.977 9.495 1 55.22 ? CAH 415 601 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #