data_5K0T
#
_model_server_result.job_id            2JiJ8NUyJYckunmrW7OU7g 
_model_server_result.datetime_utc      '2024-11-23 11:57:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k0t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":602}' 
#
_entry.id    5K0T 
#
_exptl.entry_id    5K0T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         110.46 
_cell.angle_beta          88.09 
_cell.angle_gamma         99.72 
_cell.entry_id            5K0T 
_cell.length_a            45.16 
_cell.length_b            99.65 
_cell.length_c            104.3 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K0T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,O 1 1 
B,I,J,K,L,P 2 1 
C,M,N,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 130 n n 
C1 C2 EDO sing 131 n n 
C1 H11 EDO sing 132 n n 
C1 H12 EDO sing 133 n n 
O1 HO1 EDO sing 134 n n 
C2 O2 EDO sing 135 n n 
C2 H21 EDO sing 136 n n 
C2 H22 EDO sing 137 n n 
O2 HO2 EDO sing 138 n n 
#
_atom_sites.entry_id                     5K0T 
_atom_sites.fract_transf_matrix[1][1]    0.022143 
_atom_sites.fract_transf_matrix[1][2]    0.003795 
_atom_sites.fract_transf_matrix[1][3]    0.000627 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010181 
_atom_sites.fract_transf_matrix[2][3]    0.003793 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 415 A 1 601 600 415 415 . 
E 3 EDO A 1 602 1 EDO EDO . 
F 3 EDO A 1 603 2 EDO EDO . 
G 3 EDO A 1 604 4 EDO EDO . 
H 3 EDO A 1 605 15 EDO EDO . 
I 2 415 B 1 601 600 415 415 . 
J 3 EDO B 1 602 5 EDO EDO . 
K 3 EDO B 1 603 12 EDO EDO . 
L 3 EDO B 1 604 13 EDO EDO . 
M 2 415 C 1 601 600 415 415 . 
N 3 EDO C 1 602 8 EDO EDO . 
O 4 HOH A 1 701 9 HOH HOH . 
O 4 HOH A 2 702 95 HOH HOH . 
O 4 HOH A 3 703 18 HOH HOH . 
O 4 HOH A 4 704 4 HOH HOH . 
O 4 HOH A 5 705 135 HOH HOH . 
O 4 HOH A 6 706 14 HOH HOH . 
O 4 HOH A 7 707 136 HOH HOH . 
O 4 HOH A 8 708 11 HOH HOH . 
O 4 HOH A 9 709 16 HOH HOH . 
O 4 HOH A 10 710 23 HOH HOH . 
O 4 HOH A 11 711 5 HOH HOH . 
O 4 HOH A 12 712 169 HOH HOH . 
O 4 HOH A 13 713 143 HOH HOH . 
O 4 HOH A 14 714 157 HOH HOH . 
O 4 HOH A 15 715 98 HOH HOH . 
O 4 HOH A 16 716 22 HOH HOH . 
O 4 HOH A 17 717 140 HOH HOH . 
O 4 HOH A 18 718 93 HOH HOH . 
O 4 HOH A 19 719 8 HOH HOH . 
O 4 HOH A 20 720 94 HOH HOH . 
O 4 HOH A 21 721 21 HOH HOH . 
O 4 HOH A 22 722 141 HOH HOH . 
O 4 HOH A 23 723 138 HOH HOH . 
O 4 HOH A 24 724 134 HOH HOH . 
O 4 HOH A 25 725 7 HOH HOH . 
O 4 HOH A 26 726 6 HOH HOH . 
O 4 HOH A 27 727 27 HOH HOH . 
O 4 HOH A 28 728 102 HOH HOH . 
O 4 HOH A 29 729 103 HOH HOH . 
O 4 HOH A 30 730 13 HOH HOH . 
O 4 HOH A 31 731 25 HOH HOH . 
O 4 HOH A 32 732 10 HOH HOH . 
O 4 HOH A 33 733 24 HOH HOH . 
O 4 HOH A 34 734 142 HOH HOH . 
O 4 HOH A 35 735 1 HOH HOH . 
O 4 HOH A 36 736 26 HOH HOH . 
O 4 HOH A 37 737 2 HOH HOH . 
O 4 HOH A 38 738 101 HOH HOH . 
O 4 HOH A 39 739 155 HOH HOH . 
O 4 HOH A 40 740 3 HOH HOH . 
O 4 HOH A 41 741 99 HOH HOH . 
O 4 HOH A 42 742 19 HOH HOH . 
O 4 HOH A 43 743 139 HOH HOH . 
O 4 HOH A 44 744 12 HOH HOH . 
O 4 HOH A 45 745 122 HOH HOH . 
O 4 HOH A 46 746 163 HOH HOH . 
O 4 HOH A 47 747 15 HOH HOH . 
O 4 HOH A 48 748 20 HOH HOH . 
O 4 HOH A 49 749 137 HOH HOH . 
O 4 HOH A 50 750 17 HOH HOH . 
O 4 HOH A 51 751 100 HOH HOH . 
O 4 HOH A 52 752 96 HOH HOH . 
P 4 HOH B 1 701 65 HOH HOH . 
P 4 HOH B 2 702 41 HOH HOH . 
P 4 HOH B 3 703 64 HOH HOH . 
P 4 HOH B 4 704 51 HOH HOH . 
P 4 HOH B 5 705 147 HOH HOH . 
P 4 HOH B 6 706 29 HOH HOH . 
P 4 HOH B 7 707 36 HOH HOH . 
P 4 HOH B 8 708 112 HOH HOH . 
P 4 HOH B 9 709 66 HOH HOH . 
P 4 HOH B 10 710 110 HOH HOH . 
P 4 HOH B 11 711 72 HOH HOH . 
P 4 HOH B 12 712 165 HOH HOH . 
P 4 HOH B 13 713 109 HOH HOH . 
P 4 HOH B 14 714 59 HOH HOH . 
P 4 HOH B 15 715 32 HOH HOH . 
P 4 HOH B 16 716 30 HOH HOH . 
P 4 HOH B 17 717 144 HOH HOH . 
P 4 HOH B 18 718 46 HOH HOH . 
P 4 HOH B 19 719 145 HOH HOH . 
P 4 HOH B 20 720 43 HOH HOH . 
P 4 HOH B 21 721 28 HOH HOH . 
P 4 HOH B 22 722 97 HOH HOH . 
P 4 HOH B 23 723 40 HOH HOH . 
P 4 HOH B 24 724 52 HOH HOH . 
P 4 HOH B 25 725 104 HOH HOH . 
P 4 HOH B 26 726 153 HOH HOH . 
P 4 HOH B 27 727 67 HOH HOH . 
P 4 HOH B 28 728 44 HOH HOH . 
P 4 HOH B 29 729 106 HOH HOH . 
P 4 HOH B 30 730 148 HOH HOH . 
P 4 HOH B 31 731 107 HOH HOH . 
P 4 HOH B 32 732 33 HOH HOH . 
P 4 HOH B 33 733 105 HOH HOH . 
P 4 HOH B 34 734 160 HOH HOH . 
P 4 HOH B 35 735 60 HOH HOH . 
P 4 HOH B 36 736 152 HOH HOH . 
P 4 HOH B 37 737 45 HOH HOH . 
P 4 HOH B 38 738 37 HOH HOH . 
P 4 HOH B 39 739 68 HOH HOH . 
P 4 HOH B 40 740 42 HOH HOH . 
P 4 HOH B 41 741 50 HOH HOH . 
P 4 HOH B 42 742 108 HOH HOH . 
P 4 HOH B 43 743 111 HOH HOH . 
P 4 HOH B 44 744 39 HOH HOH . 
P 4 HOH B 45 745 57 HOH HOH . 
P 4 HOH B 46 746 149 HOH HOH . 
P 4 HOH B 47 747 146 HOH HOH . 
P 4 HOH B 48 748 63 HOH HOH . 
P 4 HOH B 49 749 154 HOH HOH . 
P 4 HOH B 50 750 49 HOH HOH . 
P 4 HOH B 51 751 150 HOH HOH . 
P 4 HOH B 52 752 54 HOH HOH . 
P 4 HOH B 53 753 53 HOH HOH . 
P 4 HOH B 54 754 34 HOH HOH . 
P 4 HOH B 55 755 62 HOH HOH . 
P 4 HOH B 56 756 38 HOH HOH . 
P 4 HOH B 57 757 61 HOH HOH . 
P 4 HOH B 58 758 55 HOH HOH . 
P 4 HOH B 59 759 56 HOH HOH . 
P 4 HOH B 60 760 164 HOH HOH . 
P 4 HOH B 61 761 58 HOH HOH . 
P 4 HOH B 62 762 31 HOH HOH . 
P 4 HOH B 63 763 113 HOH HOH . 
P 4 HOH B 64 764 35 HOH HOH . 
P 4 HOH B 65 765 162 HOH HOH . 
P 4 HOH B 66 766 48 HOH HOH . 
P 4 HOH B 67 767 47 HOH HOH . 
P 4 HOH B 68 768 161 HOH HOH . 
P 4 HOH B 69 769 151 HOH HOH . 
Q 4 HOH C 1 701 83 HOH HOH . 
Q 4 HOH C 2 702 117 HOH HOH . 
Q 4 HOH C 3 703 128 HOH HOH . 
Q 4 HOH C 4 704 125 HOH HOH . 
Q 4 HOH C 5 705 168 HOH HOH . 
Q 4 HOH C 6 706 124 HOH HOH . 
Q 4 HOH C 7 707 75 HOH HOH . 
Q 4 HOH C 8 708 88 HOH HOH . 
Q 4 HOH C 9 709 92 HOH HOH . 
Q 4 HOH C 10 710 69 HOH HOH . 
Q 4 HOH C 11 711 115 HOH HOH . 
Q 4 HOH C 12 712 116 HOH HOH . 
Q 4 HOH C 13 713 131 HOH HOH . 
Q 4 HOH C 14 714 89 HOH HOH . 
Q 4 HOH C 15 715 70 HOH HOH . 
Q 4 HOH C 16 716 87 HOH HOH . 
Q 4 HOH C 17 717 85 HOH HOH . 
Q 4 HOH C 18 718 71 HOH HOH . 
Q 4 HOH C 19 719 120 HOH HOH . 
Q 4 HOH C 20 720 90 HOH HOH . 
Q 4 HOH C 21 721 86 HOH HOH . 
Q 4 HOH C 22 722 129 HOH HOH . 
Q 4 HOH C 23 723 73 HOH HOH . 
Q 4 HOH C 24 724 91 HOH HOH . 
Q 4 HOH C 25 725 123 HOH HOH . 
Q 4 HOH C 26 726 76 HOH HOH . 
Q 4 HOH C 27 727 84 HOH HOH . 
Q 4 HOH C 28 728 158 HOH HOH . 
Q 4 HOH C 29 729 121 HOH HOH . 
Q 4 HOH C 30 730 133 HOH HOH . 
Q 4 HOH C 31 731 132 HOH HOH . 
Q 4 HOH C 32 732 126 HOH HOH . 
Q 4 HOH C 33 733 74 HOH HOH . 
Q 4 HOH C 34 734 81 HOH HOH . 
Q 4 HOH C 35 735 118 HOH HOH . 
Q 4 HOH C 36 736 159 HOH HOH . 
Q 4 HOH C 37 737 119 HOH HOH . 
Q 4 HOH C 38 738 79 HOH HOH . 
Q 4 HOH C 39 739 127 HOH HOH . 
Q 4 HOH C 40 740 156 HOH HOH . 
Q 4 HOH C 41 741 80 HOH HOH . 
Q 4 HOH C 42 742 166 HOH HOH . 
Q 4 HOH C 43 743 77 HOH HOH . 
Q 4 HOH C 44 744 114 HOH HOH . 
Q 4 HOH C 45 745 167 HOH HOH . 
Q 4 HOH C 46 746 82 HOH HOH . 
Q 4 HOH C 47 747 130 HOH HOH . 
Q 4 HOH C 48 748 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 3 -23.154 10.227 47.684 1 79.9 ? C1 EDO 602 C 1 
HETATM 2 O O1 EDO . . . N 3 -22.703 10.928 46.52 1 80.04 ? O1 EDO 602 C 1 
HETATM 3 C C2 EDO . . . N 3 -24.608 9.804 47.505 1 80.17 ? C2 EDO 602 C 1 
HETATM 4 O O2 EDO . . . N 3 -24.831 8.551 48.162 1 80.11 ? O2 EDO 602 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           4 
#