data_5K10 # _model_server_result.job_id ItHNCGKaED0L8CL8e7h_Yw _model_server_result.datetime_utc '2024-11-21 23:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5K10 # _exptl.entry_id 5K10 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K10 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 235 n n PA O2A NDP sing 236 n n PA O5B NDP sing 237 n n PA O3 NDP sing 238 n n O2A HOA2 NDP sing 239 n n O5B C5B NDP sing 240 n n C5B C4B NDP sing 241 n n C5B H51A NDP sing 242 n n C5B H52A NDP sing 243 n n C4B O4B NDP sing 244 n n C4B C3B NDP sing 245 n n C4B H4B NDP sing 246 n n O4B C1B NDP sing 247 n n C3B O3B NDP sing 248 n n C3B C2B NDP sing 249 n n C3B H3B NDP sing 250 n n O3B HO3A NDP sing 251 n n C2B O2B NDP sing 252 n n C2B C1B NDP sing 253 n n C2B H2B NDP sing 254 n n O2B P2B NDP sing 255 n n C1B N9A NDP sing 256 n n C1B H1B NDP sing 257 n n N9A C8A NDP sing 258 n y N9A C4A NDP sing 259 n y C8A N7A NDP doub 260 n y C8A H8A NDP sing 261 n n N7A C5A NDP sing 262 n y C5A C6A NDP sing 263 n y C5A C4A NDP doub 264 n y C6A N6A NDP sing 265 n n C6A N1A NDP doub 266 n y N6A H61A NDP sing 267 n n N6A H62A NDP sing 268 n n N1A C2A NDP sing 269 n y C2A N3A NDP doub 270 n y C2A H2A NDP sing 271 n n N3A C4A NDP sing 272 n y O3 PN NDP sing 273 n n PN O1N NDP doub 274 n n PN O2N NDP sing 275 n n PN O5D NDP sing 276 n n O2N H21N NDP sing 277 n n O5D C5D NDP sing 278 n n C5D C4D NDP sing 279 n n C5D H51N NDP sing 280 n n C5D H52N NDP sing 281 n n C4D O4D NDP sing 282 n n C4D C3D NDP sing 283 n n C4D H4D NDP sing 284 n n O4D C1D NDP sing 285 n n C3D O3D NDP sing 286 n n C3D C2D NDP sing 287 n n C3D H3D NDP sing 288 n n O3D HO3N NDP sing 289 n n C2D O2D NDP sing 290 n n C2D C1D NDP sing 291 n n C2D H2D NDP sing 292 n n O2D HO2N NDP sing 293 n n C1D N1N NDP sing 294 n n C1D H1D NDP sing 295 n n N1N C2N NDP sing 296 n n N1N C6N NDP sing 297 n n C2N C3N NDP doub 298 n n C2N H2N NDP sing 299 n n C3N C7N NDP sing 300 n n C3N C4N NDP sing 301 n n C7N O7N NDP doub 302 n n C7N N7N NDP sing 303 n n N7N H71N NDP sing 304 n n N7N H72N NDP sing 305 n n C4N C5N NDP sing 306 n n C4N H41N NDP sing 307 n n C4N H42N NDP sing 308 n n C5N C6N NDP doub 309 n n C5N H5N NDP sing 310 n n C6N H6N NDP sing 311 n n P2B O1X NDP doub 312 n n P2B O2X NDP sing 313 n n P2B O3X NDP sing 314 n n O2X HOP2 NDP sing 315 n n O3X HOP3 NDP sing 316 n n # _atom_sites.entry_id 5K10 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 423 NDP NDP . D 2 NDP B 1 501 423 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 66.255 37.649 44.32 1 62.83 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . C 2 66.607 38.695 43.33 1 63.94 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . C 2 67.167 36.489 44.579 1 67.6 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . C 2 64.749 37.121 43.975 1 65.14 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . C 2 63.986 38.27 44.029 1 63.94 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . C 2 63.595 38.672 42.637 1 63.71 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . C 2 64.126 39.923 42.346 1 63.98 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . C 2 64.213 37.704 41.661 1 65.18 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . C 2 63.407 36.575 41.523 1 64.95 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . C 2 64.133 38.537 40.374 1 66.03 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . C 2 63.027 38.343 39.679 1 69.19 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . C 2 64.167 40.01 40.941 1 65.03 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . C 2 65.427 40.619 40.585 1 64.99 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . C 2 66.527 40.87 41.393 1 64.44 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . C 2 67.546 41.43 40.738 1 64.41 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . C 2 67.082 41.542 39.441 1 63.43 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . C 2 67.668 42.046 38.284 1 63.69 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . C 2 68.944 42.553 38.316 1 61.8 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . C 2 67.005 42.051 37.102 1 64.1 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . C 2 65.746 41.529 37.15 1 63.73 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . C 2 65.051 41.016 38.161 1 65 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . C 2 65.762 41.036 39.327 1 64.46 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . C 2 66.196 38.538 45.699 1 66.38 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . C 2 66.037 37.553 46.931 1 65.47 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . C 2 65.911 38.358 48.161 1 67.15 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . C 2 65.189 36.332 46.659 1 61.9 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . C 2 67.596 36.808 47.165 1 68.75 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . C 2 67.813 36.83 48.495 1 70.26 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . C 2 69.036 37.647 48.737 1 71.09 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . C 2 68.681 39.027 48.716 1 71.66 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . C 2 69.545 37.342 50.16 1 71.42 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . C 2 70.921 37.318 50.101 1 69.24 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . C 2 69.08 38.544 50.939 1 72.23 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . C 2 69.94 38.864 51.981 1 71.98 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . C 2 69.24 39.612 49.858 1 73.62 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . C 2 68.456 40.767 50.208 1 75.18 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . C 2 69.059 41.979 50.319 1 77.95 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . C 2 68.319 43.076 50.096 1 78.56 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . C 2 68.993 44.334 50.226 1 79.09 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . C 2 68.422 45.418 50.382 1 82.13 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . C 2 70.37 44.297 50.172 1 77.57 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . C 2 66.884 42.991 49.742 1 78.08 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . C 2 66.309 41.717 50.211 1 77.11 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . C 2 67.088 40.66 50.429 1 76.08 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . C 2 63.458 37.876 37.974 1 67.27 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . C 2 62.525 36.713 37.859 1 69.73 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . C 2 63.126 39.135 37.167 1 68.66 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . C 2 64.91 37.579 38.225 1 68.73 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #