data_5K18 # _model_server_result.job_id cmi_hltwbTKd7gp0h3pisA _model_server_result.datetime_utc '2024-11-13 07:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 5K18 # _exptl.entry_id 5K18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.12 _cell.angle_beta 88.91 _cell.angle_gamma 84.05 _cell.entry_id 5K18 _cell.length_a 83.054 _cell.length_b 91.087 _cell.length_c 101.74 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I,J 1 1 C,D,F,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C ACE 1 F ACE 202 1_555 E N MET 2 F MET 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale2 F C ACE 1 E ACE 202 1_555 F N MET 2 E MET 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 76 n y N1A C6A COA doub 77 n y C2A N3A COA doub 78 n y C2A H2A COA sing 79 n n N3A C4A COA sing 80 n y C4A C5A COA doub 81 n y C4A N9A COA sing 82 n y C5A C6A COA sing 83 n y C5A N7A COA sing 84 n y C6A N6A COA sing 85 n n N6A H61A COA sing 86 n n N6A H62A COA sing 87 n n N7A C8A COA doub 88 n y C8A N9A COA sing 89 n y C8A H8A COA sing 90 n n N9A C1B COA sing 91 n n C1B C2B COA sing 92 n n C1B O4B COA sing 93 n n C1B H1B COA sing 94 n n C2B O2B COA sing 95 n n C2B C3B COA sing 96 n n C2B H2B COA sing 97 n n O2B HO2A COA sing 98 n n C3B O3B COA sing 99 n n C3B C4B COA sing 100 n n C3B H3B COA sing 101 n n O3B P3B COA sing 102 n n P3B O7A COA doub 103 n n P3B O8A COA sing 104 n n P3B O9A COA sing 105 n n O8A HOA8 COA sing 106 n n O9A HOA9 COA sing 107 n n C4B O4B COA sing 108 n n C4B C5B COA sing 109 n n C4B H4B COA sing 110 n n C5B O5B COA sing 111 n n C5B H51A COA sing 112 n n C5B H52A COA sing 113 n n O5B P1A COA sing 114 n n P1A O1A COA doub 115 n n P1A O2A COA sing 116 n n P1A O3A COA sing 117 n n O2A HOA2 COA sing 118 n n O3A P2A COA sing 119 n n P2A O4A COA doub 120 n n P2A O5A COA sing 121 n n P2A O6A COA sing 122 n n O5A HOA5 COA sing 123 n n O6A CCP COA sing 124 n n CBP CCP COA sing 125 n n CBP CDP COA sing 126 n n CBP CEP COA sing 127 n n CBP CAP COA sing 128 n n CCP H121 COA sing 129 n n CCP H122 COA sing 130 n n CDP H131 COA sing 131 n n CDP H132 COA sing 132 n n CDP H133 COA sing 133 n n CEP H141 COA sing 134 n n CEP H142 COA sing 135 n n CEP H143 COA sing 136 n n CAP OAP COA sing 137 n n CAP C9P COA sing 138 n n CAP H10 COA sing 139 n n OAP HO1 COA sing 140 n n C9P O9P COA doub 141 n n C9P N8P COA sing 142 n n N8P C7P COA sing 143 n n N8P HN8 COA sing 144 n n C7P C6P COA sing 145 n n C7P H71 COA sing 146 n n C7P H72 COA sing 147 n n C6P C5P COA sing 148 n n C6P H61 COA sing 149 n n C6P H62 COA sing 150 n n C5P O5P COA doub 151 n n C5P N4P COA sing 152 n n N4P C3P COA sing 153 n n N4P HN4 COA sing 154 n n C3P C2P COA sing 155 n n C3P H31 COA sing 156 n n C3P H32 COA sing 157 n n C2P S1P COA sing 158 n n C2P H21 COA sing 159 n n C2P H22 COA sing 160 n n S1P HS1 COA sing 161 n n # _atom_sites.entry_id 5K18 _atom_sites.fract_transf_matrix[1][1] 0.01204 _atom_sites.fract_transf_matrix[1][2] -0.001255 _atom_sites.fract_transf_matrix[1][3] 0.00021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011038 _atom_sites.fract_transf_matrix[2][3] -0.00399 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 COA B 1 201 201 COA COA . H 4 COA D 1 201 201 COA COA . I 5 HOH A 1 801 801 HOH HOH . I 5 HOH A 2 802 802 HOH HOH . I 5 HOH A 3 803 803 HOH HOH . I 5 HOH A 4 804 804 HOH HOH . I 5 HOH A 5 805 805 HOH HOH . I 5 HOH A 6 806 806 HOH HOH . I 5 HOH A 7 807 807 HOH HOH . J 5 HOH B 1 301 301 HOH HOH . J 5 HOH B 2 302 302 HOH HOH . K 5 HOH C 1 801 801 HOH HOH . K 5 HOH C 2 802 802 HOH HOH . K 5 HOH C 3 803 803 HOH HOH . K 5 HOH C 4 804 804 HOH HOH . K 5 HOH C 5 805 805 HOH HOH . K 5 HOH C 6 806 806 HOH HOH . K 5 HOH C 7 807 807 HOH HOH . L 5 HOH D 1 301 301 HOH HOH . L 5 HOH D 2 302 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . G 4 -75.742 10.487 -16.725 1 76.02 ? N1A COA 201 B 1 HETATM 2 C C2A COA . . . G 4 -76.823 10.161 -15.993 1 78.9 ? C2A COA 201 B 1 HETATM 3 N N3A COA . . . G 4 -76.861 9.12 -15.141 1 78.85 ? N3A COA 201 B 1 HETATM 4 C C4A COA . . . G 4 -75.781 8.322 -14.97 1 77.79 ? C4A COA 201 B 1 HETATM 5 C C5A COA . . . G 4 -74.559 8.614 -15.735 1 76.03 ? C5A COA 201 B 1 HETATM 6 C C6A COA . . . G 4 -74.594 9.777 -16.653 1 67.34 ? C6A COA 201 B 1 HETATM 7 N N6A COA . . . G 4 -73.513 10.116 -17.396 1 50.37 ? N6A COA 201 B 1 HETATM 8 N N7A COA . . . G 4 -73.653 7.683 -15.383 1 77.85 ? N7A COA 201 B 1 HETATM 9 C C8A COA . . . G 4 -74.241 6.867 -14.472 1 77.04 ? C8A COA 201 B 1 HETATM 10 N N9A COA . . . G 4 -75.509 7.247 -14.226 1 75.2 ? N9A COA 201 B 1 HETATM 11 C C1B COA . . . G 4 -76.447 6.583 -13.286 1 69.19 ? C1B COA 201 B 1 HETATM 12 C C2B COA . . . G 4 -77.221 5.495 -14.015 1 59.19 ? C2B COA 201 B 1 HETATM 13 O O2B COA . . . G 4 -78.62 5.81 -14.009 1 48.42 ? O2B COA 201 B 1 HETATM 14 C C3B COA . . . G 4 -76.905 4.193 -13.291 1 67.51 ? C3B COA 201 B 1 HETATM 15 O O3B COA . . . G 4 -78.068 3.56 -12.757 1 91.3 ? O3B COA 201 B 1 HETATM 16 P P3B COA . . . G 4 -79.273 3.113 -13.727 1 103.58 ? P3B COA 201 B 1 HETATM 17 O O7A COA . . . G 4 -78.655 3.123 -15.104 1 99.53 ? O7A COA 201 B 1 HETATM 18 O O8A COA . . . G 4 -80.327 4.173 -13.509 1 108.14 -1 O8A COA 201 B 1 HETATM 19 O O9A COA . . . G 4 -79.655 1.742 -13.225 1 113.37 ? O9A COA 201 B 1 HETATM 20 C C4B COA . . . G 4 -75.954 4.558 -12.161 1 69.05 ? C4B COA 201 B 1 HETATM 21 O O4B COA . . . G 4 -75.713 5.966 -12.225 1 72.55 ? O4B COA 201 B 1 HETATM 22 C C5B COA . . . G 4 -74.636 3.804 -12.281 1 73.67 ? C5B COA 201 B 1 HETATM 23 O O5B COA . . . G 4 -74.383 3.501 -13.651 1 70.35 ? O5B COA 201 B 1 HETATM 24 P P1A COA . . . G 4 -72.982 2.844 -14.098 1 54.89 ? P1A COA 201 B 1 HETATM 25 O O1A COA . . . G 4 -72.949 1.42 -13.598 1 60.99 -1 O1A COA 201 B 1 HETATM 26 O O2A COA . . . G 4 -72.771 3.134 -15.564 1 68.52 ? O2A COA 201 B 1 HETATM 27 O O3A COA . . . G 4 -71.908 3.699 -13.256 1 61.26 ? O3A COA 201 B 1 HETATM 28 P P2A COA . . . G 4 -70.41 3.902 -13.809 1 52.02 ? P2A COA 201 B 1 HETATM 29 O O4A COA . . . G 4 -70.492 4.249 -15.277 1 45.85 -1 O4A COA 201 B 1 HETATM 30 O O5A COA . . . G 4 -69.577 2.726 -13.359 1 50.33 ? O5A COA 201 B 1 HETATM 31 O O6A COA . . . G 4 -69.914 5.208 -13.01 1 45.64 ? O6A COA 201 B 1 HETATM 32 C CBP COA . . . G 4 -69.083 7.455 -13.252 1 70.26 ? CBP COA 201 B 1 HETATM 33 C CCP COA . . . G 4 -68.813 5.976 -13.491 1 70.92 ? CCP COA 201 B 1 HETATM 34 C CDP COA . . . G 4 -67.961 8.29 -13.853 1 61.27 ? CDP COA 201 B 1 HETATM 35 C CEP COA . . . G 4 -70.413 7.846 -13.88 1 84.37 ? CEP COA 201 B 1 HETATM 36 C CAP COA . . . G 4 -69.146 7.713 -11.752 1 60.69 ? CAP COA 201 B 1 HETATM 37 O OAP COA . . . G 4 -70.13 6.857 -11.161 1 45.38 ? OAP COA 201 B 1 HETATM 38 C C9P COA . . . G 4 -67.806 7.431 -11.139 1 77.27 ? C9P COA 201 B 1 HETATM 39 O O9P COA . . . G 4 -67.527 6.309 -10.751 1 97.91 ? O9P COA 201 B 1 HETATM 40 N N8P COA . . . G 4 -66.966 8.458 -11.051 1 61.37 ? N8P COA 201 B 1 HETATM 41 C C7P COA . . . G 4 -65.651 8.313 -10.457 1 43.6 ? C7P COA 201 B 1 HETATM 42 C C6P COA . . . G 4 -65.189 9.593 -9.771 1 57.55 ? C6P COA 201 B 1 HETATM 43 C C5P COA . . . G 4 -66.391 10.353 -9.263 1 69.74 ? C5P COA 201 B 1 HETATM 44 O O5P COA . . . G 4 -66.923 11.205 -9.955 1 97.67 ? O5P COA 201 B 1 HETATM 45 N N4P COA . . . G 4 -66.818 10.04 -8.043 1 52.96 ? N4P COA 201 B 1 HETATM 46 C C3P COA . . . G 4 -66.154 9.028 -7.244 1 47.14 ? C3P COA 201 B 1 HETATM 47 C C2P COA . . . G 4 -67.145 8.195 -6.44 1 50.18 ? C2P COA 201 B 1 HETATM 48 S S1P COA . . . G 4 -67.765 9.171 -5.048 1 45.49 ? S1P COA 201 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #