data_5K1C # _model_server_result.job_id J47rGcunvwXzN7g3RYbUYw _model_server_result.datetime_utc '2025-06-19 08:45:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5K1C # _exptl.entry_id 5K1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K1C _cell.length_a 217.903 _cell.length_b 217.903 _cell.length_c 223.819 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 186 1_555 A SG CYS 174 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? disulf ? disulf2 A SG CYS 171 A CYS 186 1_555 A SG CYS 218 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? disulf ? disulf3 A SG CYS 171 A CYS 186 1_555 A SG CYS 221 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? disulf ? disulf4 A SG CYS 174 A CYS 189 1_555 A SG CYS 218 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? disulf ? disulf5 A SG CYS 174 A CYS 189 1_555 A SG CYS 221 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K1C _atom_sites.fract_transf_matrix[1][1] 0.004589 _atom_sites.fract_transf_matrix[1][2] 0.00265 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 401 1 ZN ZN . E 5 PO4 B 1 601 1 PO4 PO4 . F 6 TAM C 1 601 1 TAM TAM . G 7 HOH A 1 501 64 HOH HOH . G 7 HOH A 2 502 125 HOH HOH . G 7 HOH A 3 503 20 HOH HOH . G 7 HOH A 4 504 44 HOH HOH . G 7 HOH A 5 505 90 HOH HOH . G 7 HOH A 6 506 56 HOH HOH . H 7 HOH B 1 701 40 HOH HOH . H 7 HOH B 2 702 78 HOH HOH . H 7 HOH B 3 703 71 HOH HOH . H 7 HOH B 4 704 117 HOH HOH . H 7 HOH B 5 705 132 HOH HOH . H 7 HOH B 6 706 46 HOH HOH . H 7 HOH B 7 707 115 HOH HOH . H 7 HOH B 8 708 127 HOH HOH . H 7 HOH B 9 709 139 HOH HOH . H 7 HOH B 10 710 140 HOH HOH . H 7 HOH B 11 711 118 HOH HOH . H 7 HOH B 12 712 143 HOH HOH . H 7 HOH B 13 713 121 HOH HOH . H 7 HOH B 14 714 76 HOH HOH . H 7 HOH B 15 715 126 HOH HOH . H 7 HOH B 16 716 84 HOH HOH . H 7 HOH B 17 717 110 HOH HOH . H 7 HOH B 18 718 55 HOH HOH . H 7 HOH B 19 719 128 HOH HOH . H 7 HOH B 20 720 116 HOH HOH . H 7 HOH B 21 721 53 HOH HOH . H 7 HOH B 22 722 135 HOH HOH . H 7 HOH B 23 723 124 HOH HOH . H 7 HOH B 24 724 130 HOH HOH . H 7 HOH B 25 725 21 HOH HOH . H 7 HOH B 26 726 17 HOH HOH . H 7 HOH B 27 727 22 HOH HOH . H 7 HOH B 28 728 43 HOH HOH . H 7 HOH B 29 729 25 HOH HOH . H 7 HOH B 30 730 95 HOH HOH . H 7 HOH B 31 731 111 HOH HOH . H 7 HOH B 32 732 103 HOH HOH . H 7 HOH B 33 733 1 HOH HOH . H 7 HOH B 34 734 26 HOH HOH . H 7 HOH B 35 735 3 HOH HOH . H 7 HOH B 36 736 113 HOH HOH . H 7 HOH B 37 737 62 HOH HOH . H 7 HOH B 38 738 79 HOH HOH . H 7 HOH B 39 739 114 HOH HOH . H 7 HOH B 40 740 72 HOH HOH . H 7 HOH B 41 741 112 HOH HOH . H 7 HOH B 42 742 15 HOH HOH . I 7 HOH C 1 701 8 HOH HOH . I 7 HOH C 2 702 123 HOH HOH . I 7 HOH C 3 703 129 HOH HOH . I 7 HOH C 4 704 106 HOH HOH . I 7 HOH C 5 705 144 HOH HOH . I 7 HOH C 6 706 145 HOH HOH . I 7 HOH C 7 707 142 HOH HOH . I 7 HOH C 8 708 134 HOH HOH . I 7 HOH C 9 709 138 HOH HOH . I 7 HOH C 10 710 136 HOH HOH . I 7 HOH C 11 711 137 HOH HOH . I 7 HOH C 12 712 133 HOH HOH . I 7 HOH C 13 713 45 HOH HOH . I 7 HOH C 14 714 120 HOH HOH . I 7 HOH C 15 715 59 HOH HOH . I 7 HOH C 16 716 33 HOH HOH . I 7 HOH C 17 717 131 HOH HOH . I 7 HOH C 18 718 119 HOH HOH . I 7 HOH C 19 719 49 HOH HOH . I 7 HOH C 20 720 122 HOH HOH . I 7 HOH C 21 721 50 HOH HOH . I 7 HOH C 22 722 51 HOH HOH . I 7 HOH C 23 723 99 HOH HOH . I 7 HOH C 24 724 141 HOH HOH . I 7 HOH C 25 725 39 HOH HOH . I 7 HOH C 26 726 146 HOH HOH . I 7 HOH C 27 727 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 58.388 _atom_site.Cartn_y 265.814 _atom_site.Cartn_z 213.323 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 1283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #