data_5K1J
#
_model_server_result.job_id            c-5eE7YZcfCLJJtN773xkA 
_model_server_result.datetime_utc      '2024-11-25 10:41:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k1j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":205}' 
#
_entry.id    5K1J 
#
_exptl.entry_id    5K1J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K1J 
_cell.length_a            42.82 
_cell.length_b            83.1 
_cell.length_c            65.34 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K1J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 85.64 83.1 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 178 n y 
N1 C5 IMD sing 179 n y 
N1 HN1 IMD sing 180 n n 
C2 N3 IMD doub 181 n y 
C2 H2 IMD sing 182 n n 
N3 C4 IMD sing 183 n y 
N3 HN3 IMD sing 184 n n 
C4 C5 IMD doub 185 n y 
C4 H4 IMD sing 186 n n 
C5 H5 IMD sing 187 n n 
#
_atom_sites.entry_id                     5K1J 
_atom_sites.fract_transf_matrix[1][1]    0.023354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012034 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMS A 1 201 4 DMS DMS . 
D 3 EDO A 1 202 1 EDO EDO . 
E 4 ACT A 1 203 1 ACT ACT . 
F 4 ACT A 1 204 4 ACT ACT . 
G 4 ACT A 1 205 5 ACT ACT . 
H 5 RE A 1 206 1 RE RE . 
I 2 DMS B 1 201 3 DMS DMS . 
J 3 EDO B 1 202 4 EDO EDO . 
K 3 EDO B 1 203 6 EDO EDO . 
L 5 RE B 1 204 2 RE RE . 
M 6 IMD B 1 205 1 IMD IMD . 
N 7 HOH A 1 301 136 HOH HOH . 
N 7 HOH A 2 302 59 HOH HOH . 
N 7 HOH A 3 303 27 HOH HOH . 
N 7 HOH A 4 304 29 HOH HOH . 
N 7 HOH A 5 305 142 HOH HOH . 
N 7 HOH A 6 306 65 HOH HOH . 
N 7 HOH A 7 307 128 HOH HOH . 
N 7 HOH A 8 308 153 HOH HOH . 
N 7 HOH A 9 309 26 HOH HOH . 
N 7 HOH A 10 310 62 HOH HOH . 
N 7 HOH A 11 311 49 HOH HOH . 
N 7 HOH A 12 312 28 HOH HOH . 
N 7 HOH A 13 313 12 HOH HOH . 
N 7 HOH A 14 314 18 HOH HOH . 
N 7 HOH A 15 315 82 HOH HOH . 
N 7 HOH A 16 316 200 HOH HOH . 
N 7 HOH A 17 317 160 HOH HOH . 
N 7 HOH A 18 318 20 HOH HOH . 
N 7 HOH A 19 319 145 HOH HOH . 
N 7 HOH A 20 320 141 HOH HOH . 
N 7 HOH A 21 321 1 HOH HOH . 
N 7 HOH A 22 322 15 HOH HOH . 
N 7 HOH A 23 323 196 HOH HOH . 
N 7 HOH A 24 324 95 HOH HOH . 
N 7 HOH A 25 325 23 HOH HOH . 
N 7 HOH A 26 326 7 HOH HOH . 
N 7 HOH A 27 327 25 HOH HOH . 
N 7 HOH A 28 328 2 HOH HOH . 
N 7 HOH A 29 329 131 HOH HOH . 
N 7 HOH A 30 330 134 HOH HOH . 
N 7 HOH A 31 331 198 HOH HOH . 
N 7 HOH A 32 332 165 HOH HOH . 
N 7 HOH A 33 333 144 HOH HOH . 
N 7 HOH A 34 334 58 HOH HOH . 
N 7 HOH A 35 335 187 HOH HOH . 
N 7 HOH A 36 336 175 HOH HOH . 
N 7 HOH A 37 337 14 HOH HOH . 
N 7 HOH A 38 338 22 HOH HOH . 
N 7 HOH A 39 339 16 HOH HOH . 
N 7 HOH A 40 340 31 HOH HOH . 
N 7 HOH A 41 341 33 HOH HOH . 
N 7 HOH A 42 342 115 HOH HOH . 
N 7 HOH A 43 343 9 HOH HOH . 
N 7 HOH A 44 344 63 HOH HOH . 
N 7 HOH A 45 345 159 HOH HOH . 
N 7 HOH A 46 346 89 HOH HOH . 
N 7 HOH A 47 347 8 HOH HOH . 
N 7 HOH A 48 348 174 HOH HOH . 
N 7 HOH A 49 349 143 HOH HOH . 
N 7 HOH A 50 350 57 HOH HOH . 
N 7 HOH A 51 351 90 HOH HOH . 
N 7 HOH A 52 352 127 HOH HOH . 
N 7 HOH A 53 353 133 HOH HOH . 
N 7 HOH A 54 354 126 HOH HOH . 
N 7 HOH A 55 355 157 HOH HOH . 
N 7 HOH A 56 356 132 HOH HOH . 
N 7 HOH A 57 357 11 HOH HOH . 
N 7 HOH A 58 358 138 HOH HOH . 
N 7 HOH A 59 359 100 HOH HOH . 
N 7 HOH A 60 360 19 HOH HOH . 
N 7 HOH A 61 361 146 HOH HOH . 
N 7 HOH A 62 362 181 HOH HOH . 
N 7 HOH A 63 363 140 HOH HOH . 
N 7 HOH A 64 364 10 HOH HOH . 
N 7 HOH A 65 365 94 HOH HOH . 
N 7 HOH A 66 366 13 HOH HOH . 
N 7 HOH A 67 367 87 HOH HOH . 
N 7 HOH A 68 368 91 HOH HOH . 
N 7 HOH A 69 369 129 HOH HOH . 
N 7 HOH A 70 370 17 HOH HOH . 
N 7 HOH A 71 371 99 HOH HOH . 
N 7 HOH A 72 372 161 HOH HOH . 
N 7 HOH A 73 373 163 HOH HOH . 
N 7 HOH A 74 374 189 HOH HOH . 
N 7 HOH A 75 375 197 HOH HOH . 
N 7 HOH A 76 376 92 HOH HOH . 
N 7 HOH A 77 377 93 HOH HOH . 
N 7 HOH A 78 378 158 HOH HOH . 
N 7 HOH A 79 379 139 HOH HOH . 
N 7 HOH A 80 380 88 HOH HOH . 
N 7 HOH A 81 381 171 HOH HOH . 
N 7 HOH A 82 382 179 HOH HOH . 
N 7 HOH A 83 383 137 HOH HOH . 
N 7 HOH A 84 384 148 HOH HOH . 
N 7 HOH A 85 385 147 HOH HOH . 
N 7 HOH A 86 386 162 HOH HOH . 
O 7 HOH B 1 301 195 HOH HOH . 
O 7 HOH B 2 302 36 HOH HOH . 
O 7 HOH B 3 303 194 HOH HOH . 
O 7 HOH B 4 304 167 HOH HOH . 
O 7 HOH B 5 305 75 HOH HOH . 
O 7 HOH B 6 306 69 HOH HOH . 
O 7 HOH B 7 307 191 HOH HOH . 
O 7 HOH B 8 308 180 HOH HOH . 
O 7 HOH B 9 309 155 HOH HOH . 
O 7 HOH B 10 310 45 HOH HOH . 
O 7 HOH B 11 311 61 HOH HOH . 
O 7 HOH B 12 312 169 HOH HOH . 
O 7 HOH B 13 313 70 HOH HOH . 
O 7 HOH B 14 314 81 HOH HOH . 
O 7 HOH B 15 315 37 HOH HOH . 
O 7 HOH B 16 316 39 HOH HOH . 
O 7 HOH B 17 317 60 HOH HOH . 
O 7 HOH B 18 318 71 HOH HOH . 
O 7 HOH B 19 319 177 HOH HOH . 
O 7 HOH B 20 320 118 HOH HOH . 
O 7 HOH B 21 321 120 HOH HOH . 
O 7 HOH B 22 322 188 HOH HOH . 
O 7 HOH B 23 323 50 HOH HOH . 
O 7 HOH B 24 324 84 HOH HOH . 
O 7 HOH B 25 325 122 HOH HOH . 
O 7 HOH B 26 326 35 HOH HOH . 
O 7 HOH B 27 327 4 HOH HOH . 
O 7 HOH B 28 328 73 HOH HOH . 
O 7 HOH B 29 329 124 HOH HOH . 
O 7 HOH B 30 330 106 HOH HOH . 
O 7 HOH B 31 331 54 HOH HOH . 
O 7 HOH B 32 332 48 HOH HOH . 
O 7 HOH B 33 333 52 HOH HOH . 
O 7 HOH B 34 334 43 HOH HOH . 
O 7 HOH B 35 335 190 HOH HOH . 
O 7 HOH B 36 336 154 HOH HOH . 
O 7 HOH B 37 337 199 HOH HOH . 
O 7 HOH B 38 338 53 HOH HOH . 
O 7 HOH B 39 339 3 HOH HOH . 
O 7 HOH B 40 340 183 HOH HOH . 
O 7 HOH B 41 341 103 HOH HOH . 
O 7 HOH B 42 342 104 HOH HOH . 
O 7 HOH B 43 343 150 HOH HOH . 
O 7 HOH B 44 344 51 HOH HOH . 
O 7 HOH B 45 345 72 HOH HOH . 
O 7 HOH B 46 346 76 HOH HOH . 
O 7 HOH B 47 347 112 HOH HOH . 
O 7 HOH B 48 348 105 HOH HOH . 
O 7 HOH B 49 349 108 HOH HOH . 
O 7 HOH B 50 350 119 HOH HOH . 
O 7 HOH B 51 351 182 HOH HOH . 
O 7 HOH B 52 352 5 HOH HOH . 
O 7 HOH B 53 353 47 HOH HOH . 
O 7 HOH B 54 354 164 HOH HOH . 
O 7 HOH B 55 355 184 HOH HOH . 
O 7 HOH B 56 356 46 HOH HOH . 
O 7 HOH B 57 357 117 HOH HOH . 
O 7 HOH B 58 358 178 HOH HOH . 
O 7 HOH B 59 359 44 HOH HOH . 
O 7 HOH B 60 360 109 HOH HOH . 
O 7 HOH B 61 361 40 HOH HOH . 
O 7 HOH B 62 362 123 HOH HOH . 
O 7 HOH B 63 363 83 HOH HOH . 
O 7 HOH B 64 364 193 HOH HOH . 
O 7 HOH B 65 365 125 HOH HOH . 
O 7 HOH B 66 366 121 HOH HOH . 
O 7 HOH B 67 367 176 HOH HOH . 
O 7 HOH B 68 368 166 HOH HOH . 
O 7 HOH B 69 369 41 HOH HOH . 
O 7 HOH B 70 370 201 HOH HOH . 
O 7 HOH B 71 371 170 HOH HOH . 
O 7 HOH B 72 372 172 HOH HOH . 
O 7 HOH B 73 373 185 HOH HOH . 
O 7 HOH B 74 374 192 HOH HOH . 
O 7 HOH B 75 375 186 HOH HOH . 
O 7 HOH B 76 376 114 HOH HOH . 
O 7 HOH B 77 377 111 HOH HOH . 
O 7 HOH B 78 378 55 HOH HOH . 
O 7 HOH B 79 379 116 HOH HOH . 
O 7 HOH B 80 380 135 HOH HOH . 
O 7 HOH B 81 381 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . M 6 54.857 29.877 -2.353 1 51.73 ? N1 IMD 205 B 1 
HETATM 2 C C2 IMD . . . M 6 54.334 30.335 -3.497 1 56.53 ? C2 IMD 205 B 1 
HETATM 3 N N3 IMD . . . M 6 55.127 31.32 -3.975 1 51.59 ? N3 IMD 205 B 1 
HETATM 4 C C4 IMD . . . M 6 56.154 31.496 -3.123 1 50.89 ? C4 IMD 205 B 1 
HETATM 5 C C5 IMD . . . M 6 55.957 30.616 -2.1 1 53.03 ? C5 IMD 205 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#