data_5K1N
#
_model_server_result.job_id            40YKk32ROj5lBYvcATJ9ug 
_model_server_result.datetime_utc      '2024-10-12 22:13:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k1n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5K1N 
#
_exptl.entry_id    5K1N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K1N 
_cell.length_a            42.65 
_cell.length_b            82.13 
_cell.length_c            67.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K1N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 85.3 82.13 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O HIS 81 A HIS 90 1_555 F RE RE . A RE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? 
metalc ? metalc2 F RE RE . A RE 204 1_555 L O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc3 F RE RE . A RE 204 1_555 B N VAL 85 B VAL 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc4 F RE RE . A RE 204 1_555 M O HOH . B HOH 351 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc5 F RE RE . A RE 204 1_555 M O HOH . B HOH 351 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.646 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 98 n n 
C1 C2 EDO sing 99 n n 
C1 H11 EDO sing 100 n n 
C1 H12 EDO sing 101 n n 
O1 HO1 EDO sing 102 n n 
C2 O2 EDO sing 103 n n 
C2 H21 EDO sing 104 n n 
C2 H22 EDO sing 105 n n 
O2 HO2 EDO sing 106 n n 
#
_atom_sites.entry_id                     5K1N 
_atom_sites.fract_transf_matrix[1][1]    0.023447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012176 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 8 EDO EDO . 
D 2 EDO A 1 202 9 EDO EDO . 
E 3 PEG A 1 203 2 PEG PEG . 
F 4 RE A 1 204 2 RE RE . 
G 5 ACT A 1 205 1 ACT ACT . 
H 6 DMS B 1 201 3 DMS DMS . 
I 4 RE B 1 202 1 RE RE . 
J 4 RE B 1 203 3 RE RE . 
K 7 IMD B 1 204 1 IMD IMD . 
L 8 HOH A 1 301 116 HOH HOH . 
L 8 HOH A 2 302 87 HOH HOH . 
L 8 HOH A 3 303 132 HOH HOH . 
L 8 HOH A 4 304 17 HOH HOH . 
L 8 HOH A 5 305 157 HOH HOH . 
L 8 HOH A 6 306 117 HOH HOH . 
L 8 HOH A 7 307 131 HOH HOH . 
L 8 HOH A 8 308 11 HOH HOH . 
L 8 HOH A 9 309 123 HOH HOH . 
L 8 HOH A 10 310 63 HOH HOH . 
L 8 HOH A 11 311 136 HOH HOH . 
L 8 HOH A 12 312 25 HOH HOH . 
L 8 HOH A 13 313 37 HOH HOH . 
L 8 HOH A 14 314 21 HOH HOH . 
L 8 HOH A 15 315 1 HOH HOH . 
L 8 HOH A 16 316 2 HOH HOH . 
L 8 HOH A 17 317 6 HOH HOH . 
L 8 HOH A 18 318 42 HOH HOH . 
L 8 HOH A 19 319 153 HOH HOH . 
L 8 HOH A 20 320 30 HOH HOH . 
L 8 HOH A 21 321 66 HOH HOH . 
L 8 HOH A 22 322 33 HOH HOH . 
L 8 HOH A 23 323 148 HOH HOH . 
L 8 HOH A 24 324 98 HOH HOH . 
L 8 HOH A 25 325 32 HOH HOH . 
L 8 HOH A 26 326 129 HOH HOH . 
L 8 HOH A 27 327 47 HOH HOH . 
L 8 HOH A 28 328 7 HOH HOH . 
L 8 HOH A 29 329 19 HOH HOH . 
L 8 HOH A 30 330 151 HOH HOH . 
L 8 HOH A 31 331 119 HOH HOH . 
L 8 HOH A 32 332 67 HOH HOH . 
L 8 HOH A 33 333 14 HOH HOH . 
L 8 HOH A 34 334 49 HOH HOH . 
L 8 HOH A 35 335 81 HOH HOH . 
L 8 HOH A 36 336 20 HOH HOH . 
L 8 HOH A 37 337 70 HOH HOH . 
L 8 HOH A 38 338 91 HOH HOH . 
L 8 HOH A 39 339 121 HOH HOH . 
L 8 HOH A 40 340 99 HOH HOH . 
L 8 HOH A 41 341 48 HOH HOH . 
L 8 HOH A 42 342 13 HOH HOH . 
L 8 HOH A 43 343 88 HOH HOH . 
L 8 HOH A 44 344 28 HOH HOH . 
L 8 HOH A 45 345 105 HOH HOH . 
L 8 HOH A 46 346 115 HOH HOH . 
L 8 HOH A 47 347 108 HOH HOH . 
L 8 HOH A 48 348 127 HOH HOH . 
L 8 HOH A 49 349 126 HOH HOH . 
L 8 HOH A 50 350 150 HOH HOH . 
L 8 HOH A 51 351 120 HOH HOH . 
L 8 HOH A 52 352 149 HOH HOH . 
L 8 HOH A 53 353 92 HOH HOH . 
L 8 HOH A 54 354 124 HOH HOH . 
L 8 HOH A 55 355 9 HOH HOH . 
L 8 HOH A 56 356 86 HOH HOH . 
L 8 HOH A 57 357 100 HOH HOH . 
L 8 HOH A 58 358 93 HOH HOH . 
L 8 HOH A 59 359 80 HOH HOH . 
L 8 HOH A 60 360 134 HOH HOH . 
L 8 HOH A 61 361 118 HOH HOH . 
L 8 HOH A 62 362 111 HOH HOH . 
L 8 HOH A 63 363 128 HOH HOH . 
L 8 HOH A 64 364 29 HOH HOH . 
L 8 HOH A 65 365 107 HOH HOH . 
L 8 HOH A 66 366 104 HOH HOH . 
L 8 HOH A 67 367 137 HOH HOH . 
L 8 HOH A 68 368 40 HOH HOH . 
L 8 HOH A 69 369 133 HOH HOH . 
L 8 HOH A 70 370 156 HOH HOH . 
L 8 HOH A 71 371 109 HOH HOH . 
L 8 HOH A 72 372 139 HOH HOH . 
L 8 HOH A 73 373 79 HOH HOH . 
L 8 HOH A 74 374 103 HOH HOH . 
L 8 HOH A 75 375 135 HOH HOH . 
L 8 HOH A 76 376 38 HOH HOH . 
L 8 HOH A 77 377 52 HOH HOH . 
L 8 HOH A 78 378 125 HOH HOH . 
L 8 HOH A 79 379 122 HOH HOH . 
L 8 HOH A 80 380 50 HOH HOH . 
M 8 HOH B 1 301 18 HOH HOH . 
M 8 HOH B 2 302 140 HOH HOH . 
M 8 HOH B 3 303 89 HOH HOH . 
M 8 HOH B 4 304 39 HOH HOH . 
M 8 HOH B 5 305 5 HOH HOH . 
M 8 HOH B 6 306 43 HOH HOH . 
M 8 HOH B 7 307 8 HOH HOH . 
M 8 HOH B 8 308 154 HOH HOH . 
M 8 HOH B 9 309 61 HOH HOH . 
M 8 HOH B 10 310 82 HOH HOH . 
M 8 HOH B 11 311 68 HOH HOH . 
M 8 HOH B 12 312 146 HOH HOH . 
M 8 HOH B 13 313 26 HOH HOH . 
M 8 HOH B 14 314 144 HOH HOH . 
M 8 HOH B 15 315 3 HOH HOH . 
M 8 HOH B 16 316 24 HOH HOH . 
M 8 HOH B 17 317 46 HOH HOH . 
M 8 HOH B 18 318 12 HOH HOH . 
M 8 HOH B 19 319 4 HOH HOH . 
M 8 HOH B 20 320 114 HOH HOH . 
M 8 HOH B 21 321 27 HOH HOH . 
M 8 HOH B 22 322 45 HOH HOH . 
M 8 HOH B 23 323 72 HOH HOH . 
M 8 HOH B 24 324 106 HOH HOH . 
M 8 HOH B 25 325 60 HOH HOH . 
M 8 HOH B 26 326 95 HOH HOH . 
M 8 HOH B 27 327 51 HOH HOH . 
M 8 HOH B 28 328 56 HOH HOH . 
M 8 HOH B 29 329 62 HOH HOH . 
M 8 HOH B 30 330 113 HOH HOH . 
M 8 HOH B 31 331 55 HOH HOH . 
M 8 HOH B 32 332 15 HOH HOH . 
M 8 HOH B 33 333 16 HOH HOH . 
M 8 HOH B 34 334 59 HOH HOH . 
M 8 HOH B 35 335 110 HOH HOH . 
M 8 HOH B 36 336 53 HOH HOH . 
M 8 HOH B 37 337 65 HOH HOH . 
M 8 HOH B 38 338 31 HOH HOH . 
M 8 HOH B 39 339 23 HOH HOH . 
M 8 HOH B 40 340 141 HOH HOH . 
M 8 HOH B 41 341 57 HOH HOH . 
M 8 HOH B 42 342 155 HOH HOH . 
M 8 HOH B 43 343 75 HOH HOH . 
M 8 HOH B 44 344 71 HOH HOH . 
M 8 HOH B 45 345 69 HOH HOH . 
M 8 HOH B 46 346 58 HOH HOH . 
M 8 HOH B 47 347 94 HOH HOH . 
M 8 HOH B 48 348 101 HOH HOH . 
M 8 HOH B 49 349 97 HOH HOH . 
M 8 HOH B 50 350 64 HOH HOH . 
M 8 HOH B 51 351 10 HOH HOH . 
M 8 HOH B 52 352 35 HOH HOH . 
M 8 HOH B 53 353 142 HOH HOH . 
M 8 HOH B 54 354 85 HOH HOH . 
M 8 HOH B 55 355 143 HOH HOH . 
M 8 HOH B 56 356 41 HOH HOH . 
M 8 HOH B 57 357 78 HOH HOH . 
M 8 HOH B 58 358 112 HOH HOH . 
M 8 HOH B 59 359 102 HOH HOH . 
M 8 HOH B 60 360 130 HOH HOH . 
M 8 HOH B 61 361 22 HOH HOH . 
M 8 HOH B 62 362 76 HOH HOH . 
M 8 HOH B 63 363 73 HOH HOH . 
M 8 HOH B 64 364 96 HOH HOH . 
M 8 HOH B 65 365 138 HOH HOH . 
M 8 HOH B 66 366 145 HOH HOH . 
M 8 HOH B 67 367 147 HOH HOH . 
M 8 HOH B 68 368 83 HOH HOH . 
M 8 HOH B 69 369 152 HOH HOH . 
M 8 HOH B 70 370 44 HOH HOH . 
M 8 HOH B 71 371 54 HOH HOH . 
M 8 HOH B 72 372 36 HOH HOH . 
M 8 HOH B 73 373 90 HOH HOH . 
M 8 HOH B 74 374 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 51.212 10.423 30.141 1 47.73 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . C 2 50.878 9.718 28.94 1 72.75 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . C 2 52.254 11.478 29.804 1 42.04 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . C 2 52.58 12.215 30.987 1 58.4 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           4 
#