data_5K27 # _model_server_result.job_id iN5Bw9VFJN1TOxCLfYiFZw _model_server_result.datetime_utc '2025-03-06 00:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5K27 # _exptl.entry_id 5K27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K27 _cell.length_a 132.354 _cell.length_b 132.354 _cell.length_c 116.773 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5K27 _atom_sites.fract_transf_matrix[1][1] 0.007555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 501 452 AMP AMP . D 3 IOD A 1 502 1 IOD IOD . E 3 IOD A 1 503 2 IOD IOD . F 3 IOD A 1 504 4 IOD IOD . G 3 IOD A 1 505 5 IOD IOD . H 2 AMP B 1 501 452 AMP AMP . I 3 IOD B 1 502 3 IOD IOD . J 4 HOH A 1 601 27 HOH HOH . J 4 HOH A 2 602 24 HOH HOH . J 4 HOH A 3 603 20 HOH HOH . J 4 HOH A 4 604 22 HOH HOH . J 4 HOH A 5 605 11 HOH HOH . J 4 HOH A 6 606 28 HOH HOH . J 4 HOH A 7 607 44 HOH HOH . J 4 HOH A 8 608 2 HOH HOH . J 4 HOH A 9 609 30 HOH HOH . J 4 HOH A 10 610 23 HOH HOH . J 4 HOH A 11 611 46 HOH HOH . J 4 HOH A 12 612 40 HOH HOH . J 4 HOH A 13 613 4 HOH HOH . J 4 HOH A 14 614 15 HOH HOH . J 4 HOH A 15 615 10 HOH HOH . J 4 HOH A 16 616 17 HOH HOH . J 4 HOH A 17 617 1 HOH HOH . J 4 HOH A 18 618 39 HOH HOH . J 4 HOH A 19 619 29 HOH HOH . J 4 HOH A 20 620 18 HOH HOH . J 4 HOH A 21 621 42 HOH HOH . J 4 HOH A 22 622 8 HOH HOH . J 4 HOH A 23 623 33 HOH HOH . J 4 HOH A 24 624 37 HOH HOH . J 4 HOH A 25 625 45 HOH HOH . J 4 HOH A 26 626 7 HOH HOH . J 4 HOH A 27 627 34 HOH HOH . J 4 HOH A 28 628 13 HOH HOH . J 4 HOH A 29 629 38 HOH HOH . J 4 HOH A 30 630 14 HOH HOH . J 4 HOH A 31 631 9 HOH HOH . J 4 HOH A 32 632 43 HOH HOH . J 4 HOH A 33 633 35 HOH HOH . K 4 HOH B 1 601 21 HOH HOH . K 4 HOH B 2 602 32 HOH HOH . K 4 HOH B 3 603 19 HOH HOH . K 4 HOH B 4 604 5 HOH HOH . K 4 HOH B 5 605 41 HOH HOH . K 4 HOH B 6 606 16 HOH HOH . K 4 HOH B 7 607 3 HOH HOH . K 4 HOH B 8 608 25 HOH HOH . K 4 HOH B 9 609 6 HOH HOH . K 4 HOH B 10 610 12 HOH HOH . K 4 HOH B 11 611 26 HOH HOH . K 4 HOH B 12 612 36 HOH HOH . K 4 HOH B 13 613 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . A . C 2 -3.64 34.699 2.837 0.5 74.28 ? P AMP 501 A 1 HETATM 2 P P AMP . B . C 2 -2.381 30.691 0.418 0.5 70.69 ? P AMP 501 A 1 HETATM 3 O O1P AMP . A . C 2 -4.287 35.941 2.284 0.5 63.87 ? O1P AMP 501 A 1 HETATM 4 O O1P AMP . B . C 2 -3.104 30.445 1.717 0.5 64.43 ? O1P AMP 501 A 1 HETATM 5 O O2P AMP . A . C 2 -4.225 33.405 2.333 0.5 74.61 ? O2P AMP 501 A 1 HETATM 6 O O2P AMP . B . C 2 -3.164 31.503 -0.581 0.5 73.58 ? O2P AMP 501 A 1 HETATM 7 O O3P AMP . A . C 2 -3.403 34.75 4.325 0.5 65.1 ? O3P AMP 501 A 1 HETATM 8 O O3P AMP . B . C 2 -1.698 29.481 -0.167 0.5 73.19 ? O3P AMP 501 A 1 HETATM 9 O O5' AMP . A . C 2 -2.16 34.741 2.224 0.5 59.27 ? O5' AMP 501 A 1 HETATM 10 O O5' AMP . B . C 2 -1.165 31.653 0.835 0.5 65.12 ? O5' AMP 501 A 1 HETATM 11 C C5' AMP . A . C 2 -1.563 33.594 1.63 0.5 64.37 ? C5' AMP 501 A 1 HETATM 12 C C5' AMP . B . C 2 -1.416 32.89 1.497 0.5 64.66 ? C5' AMP 501 A 1 HETATM 13 C C4' AMP . A . C 2 -0.145 33.99 1.257 0.5 63.6 ? C4' AMP 501 A 1 HETATM 14 C C4' AMP . B . C 2 -0.221 33.795 1.267 0.5 63.67 ? C4' AMP 501 A 1 HETATM 15 O O4' AMP . A . C 2 0.815 33.097 1.805 0.5 67.77 ? O4' AMP 501 A 1 HETATM 16 O O4' AMP . B . C 2 0.921 33.224 1.894 0.5 67.76 ? O4' AMP 501 A 1 HETATM 17 C C3' AMP . A . C 2 0.092 33.984 -0.238 0.5 61.4 ? C3' AMP 501 A 1 HETATM 18 C C3' AMP . B . C 2 0.095 33.897 -0.212 0.5 61.43 ? C3' AMP 501 A 1 HETATM 19 O O3' AMP . A . C 2 -0.204 35.257 -0.801 0.5 60.31 ? O3' AMP 501 A 1 HETATM 20 O O3' AMP . B . C 2 -0.339 35.149 -0.736 0.5 60.28 ? O3' AMP 501 A 1 HETATM 21 C C2' AMP . A . C 2 1.566 33.688 -0.36 0.5 64 ? C2' AMP 501 A 1 HETATM 22 C C2' AMP . B . C 2 1.596 33.787 -0.309 0.5 64.02 ? C2' AMP 501 A 1 HETATM 23 O O2' AMP . A . C 2 2.26 34.914 -0.588 0.5 66.75 ? O2' AMP 501 A 1 HETATM 24 O O2' AMP . B . C 2 2.143 35.09 -0.502 0.5 66.51 ? O2' AMP 501 A 1 HETATM 25 C C1' AMP . A . C 2 1.98 33.117 0.984 0.5 67.82 ? C1' AMP 501 A 1 HETATM 26 C C1' AMP . B . C 2 2.052 33.24 1.027 0.5 67.78 ? C1' AMP 501 A 1 HETATM 27 N N9 AMP . A . C 2 2.494 31.739 0.808 0.5 70.72 ? N9 AMP 501 A 1 HETATM 28 N N9 AMP . B . C 2 2.538 31.852 0.841 0.5 70.77 ? N9 AMP 501 A 1 HETATM 29 C C8 AMP . A . C 2 1.741 30.632 0.71 0.5 67.59 ? C8 AMP 501 A 1 HETATM 30 C C8 AMP . B . C 2 1.76 30.761 0.743 0.5 67.66 ? C8 AMP 501 A 1 HETATM 31 N N7 AMP . A . C 2 2.513 29.531 0.555 0.5 67.04 ? N7 AMP 501 A 1 HETATM 32 N N7 AMP . B . C 2 2.503 29.642 0.578 0.5 67.02 ? N7 AMP 501 A 1 HETATM 33 C C5 AMP . A . C 2 3.794 29.934 0.553 0.5 67.51 ? C5 AMP 501 A 1 HETATM 34 C C5 AMP . B . C 2 3.792 30.015 0.568 0.5 67.43 ? C5 AMP 501 A 1 HETATM 35 C C6 AMP . A . C 2 5.116 29.283 0.431 0.5 66.69 ? C6 AMP 501 A 1 HETATM 36 C C6 AMP . B . C 2 5.097 29.332 0.431 0.5 66.62 ? C6 AMP 501 A 1 HETATM 37 N N6 AMP . A . C 2 5.223 27.944 0.273 0.5 67.16 ? N6 AMP 501 A 1 HETATM 38 N N6 AMP . B . C 2 5.171 27.992 0.268 0.5 66.96 ? N6 AMP 501 A 1 HETATM 39 N N1 AMP . A . C 2 6.21 30.069 0.479 0.5 65.17 ? N1 AMP 501 A 1 HETATM 40 N N1 AMP . B . C 2 6.21 30.091 0.474 0.5 65.17 ? N1 AMP 501 A 1 HETATM 41 C C2 AMP . A . C 2 6.116 31.4 0.634 0.5 65.04 ? C2 AMP 501 A 1 HETATM 42 C C2 AMP . B . C 2 6.15 31.423 0.635 0.5 65.06 ? C2 AMP 501 A 1 HETATM 43 N N3 AMP . A . C 2 4.952 32.057 0.752 0.5 68.9 ? N3 AMP 501 A 1 HETATM 44 N N3 AMP . B . C 2 5.004 32.109 0.766 0.5 68.96 ? N3 AMP 501 A 1 HETATM 45 C C4 AMP . A . C 2 3.776 31.391 0.72 0.5 70.49 ? C4 AMP 501 A 1 HETATM 46 C C4 AMP . B . C 2 3.811 31.472 0.74 0.5 70.44 ? C4 AMP 501 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 46 #