data_5K27 # _model_server_result.job_id JHPxOwjwnqBIb7BrDn2ZRw _model_server_result.datetime_utc '2025-03-06 00:53:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5K27 # _exptl.entry_id 5K27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K27 _cell.length_a 132.354 _cell.length_b 132.354 _cell.length_c 116.773 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5K27 _atom_sites.fract_transf_matrix[1][1] 0.007555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 501 452 AMP AMP . D 3 IOD A 1 502 1 IOD IOD . E 3 IOD A 1 503 2 IOD IOD . F 3 IOD A 1 504 4 IOD IOD . G 3 IOD A 1 505 5 IOD IOD . H 2 AMP B 1 501 452 AMP AMP . I 3 IOD B 1 502 3 IOD IOD . J 4 HOH A 1 601 27 HOH HOH . J 4 HOH A 2 602 24 HOH HOH . J 4 HOH A 3 603 20 HOH HOH . J 4 HOH A 4 604 22 HOH HOH . J 4 HOH A 5 605 11 HOH HOH . J 4 HOH A 6 606 28 HOH HOH . J 4 HOH A 7 607 44 HOH HOH . J 4 HOH A 8 608 2 HOH HOH . J 4 HOH A 9 609 30 HOH HOH . J 4 HOH A 10 610 23 HOH HOH . J 4 HOH A 11 611 46 HOH HOH . J 4 HOH A 12 612 40 HOH HOH . J 4 HOH A 13 613 4 HOH HOH . J 4 HOH A 14 614 15 HOH HOH . J 4 HOH A 15 615 10 HOH HOH . J 4 HOH A 16 616 17 HOH HOH . J 4 HOH A 17 617 1 HOH HOH . J 4 HOH A 18 618 39 HOH HOH . J 4 HOH A 19 619 29 HOH HOH . J 4 HOH A 20 620 18 HOH HOH . J 4 HOH A 21 621 42 HOH HOH . J 4 HOH A 22 622 8 HOH HOH . J 4 HOH A 23 623 33 HOH HOH . J 4 HOH A 24 624 37 HOH HOH . J 4 HOH A 25 625 45 HOH HOH . J 4 HOH A 26 626 7 HOH HOH . J 4 HOH A 27 627 34 HOH HOH . J 4 HOH A 28 628 13 HOH HOH . J 4 HOH A 29 629 38 HOH HOH . J 4 HOH A 30 630 14 HOH HOH . J 4 HOH A 31 631 9 HOH HOH . J 4 HOH A 32 632 43 HOH HOH . J 4 HOH A 33 633 35 HOH HOH . K 4 HOH B 1 601 21 HOH HOH . K 4 HOH B 2 602 32 HOH HOH . K 4 HOH B 3 603 19 HOH HOH . K 4 HOH B 4 604 5 HOH HOH . K 4 HOH B 5 605 41 HOH HOH . K 4 HOH B 6 606 16 HOH HOH . K 4 HOH B 7 607 3 HOH HOH . K 4 HOH B 8 608 25 HOH HOH . K 4 HOH B 9 609 6 HOH HOH . K 4 HOH B 10 610 12 HOH HOH . K 4 HOH B 11 611 26 HOH HOH . K 4 HOH B 12 612 36 HOH HOH . K 4 HOH B 13 613 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 2 -23.591 4.064 -17.658 0.7 97.04 ? P AMP 501 B 1 HETATM 2 O O1P AMP . . . H 2 -24.674 3.604 -18.603 0.7 82.75 ? O1P AMP 501 B 1 HETATM 3 O O2P AMP . . . H 2 -23.184 3.043 -16.621 0.7 80.78 ? O2P AMP 501 B 1 HETATM 4 O O3P AMP . . . H 2 -23.817 5.464 -17.142 0.7 91.79 ? O3P AMP 501 B 1 HETATM 5 O O5' AMP . . . H 2 -22.295 4.172 -18.576 0.7 89.87 ? O5' AMP 501 B 1 HETATM 6 C C5' AMP . . . H 2 -22.397 4.585 -19.933 0.7 79.6 ? C5' AMP 501 B 1 HETATM 7 C C4' AMP . . . H 2 -21.674 3.633 -20.853 0.7 74.83 ? C4' AMP 501 B 1 HETATM 8 O O4' AMP . . . H 2 -22.119 3.869 -22.21 0.7 73.78 ? O4' AMP 501 B 1 HETATM 9 C C3' AMP . . . H 2 -20.162 3.787 -20.859 0.7 75.22 ? C3' AMP 501 B 1 HETATM 10 O O3' AMP . . . H 2 -19.594 2.786 -20.014 0.7 77.19 ? O3' AMP 501 B 1 HETATM 11 C C2' AMP . . . H 2 -19.778 3.517 -22.316 0.7 75.18 ? C2' AMP 501 B 1 HETATM 12 O O2' AMP . . . H 2 -19.469 2.172 -22.607 0.7 79.69 ? O2' AMP 501 B 1 HETATM 13 C C1' AMP . . . H 2 -21.014 3.977 -23.087 0.7 71.08 ? C1' AMP 501 B 1 HETATM 14 N N9 AMP . . . H 2 -20.962 5.342 -23.617 0.7 76.43 ? N9 AMP 501 B 1 HETATM 15 C C8 AMP . . . H 2 -20.981 6.498 -22.933 0.7 70.8 ? C8 AMP 501 B 1 HETATM 16 N N7 AMP . . . H 2 -20.934 7.574 -23.759 0.7 76.42 ? N7 AMP 501 B 1 HETATM 17 C C5 AMP . . . H 2 -20.888 7.094 -25.015 0.7 74.25 ? C5 AMP 501 B 1 HETATM 18 C C6 AMP . . . H 2 -20.83 7.656 -26.38 0.7 70.74 ? C6 AMP 501 B 1 HETATM 19 N N6 AMP . . . H 2 -20.804 8.992 -26.573 0.7 73.02 ? N6 AMP 501 B 1 HETATM 20 N N1 AMP . . . H 2 -20.799 6.798 -27.422 0.7 72.16 ? N1 AMP 501 B 1 HETATM 21 C C2 AMP . . . H 2 -20.82 5.467 -27.243 0.7 69.96 ? C2 AMP 501 B 1 HETATM 22 N N3 AMP . . . H 2 -20.872 4.89 -26.035 0.7 81.27 ? N3 AMP 501 B 1 HETATM 23 C C4 AMP . . . H 2 -20.903 5.634 -24.91 0.7 77.91 ? C4 AMP 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #