data_5K27 # _model_server_result.job_id -Unq-JD6s2UP7lqdvkJwHw _model_server_result.datetime_utc '2024-10-28 02:22:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 5K27 # _exptl.entry_id 5K27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K27 _cell.length_a 132.354 _cell.length_b 132.354 _cell.length_c 116.773 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K27 _atom_sites.fract_transf_matrix[1][1] 0.007555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 501 452 AMP AMP . D 3 IOD A 1 502 1 IOD IOD . E 3 IOD A 1 503 2 IOD IOD . F 3 IOD A 1 504 4 IOD IOD . G 3 IOD A 1 505 5 IOD IOD . H 2 AMP B 1 501 452 AMP AMP . I 3 IOD B 1 502 3 IOD IOD . J 4 HOH A 1 601 27 HOH HOH . J 4 HOH A 2 602 24 HOH HOH . J 4 HOH A 3 603 20 HOH HOH . J 4 HOH A 4 604 22 HOH HOH . J 4 HOH A 5 605 11 HOH HOH . J 4 HOH A 6 606 28 HOH HOH . J 4 HOH A 7 607 44 HOH HOH . J 4 HOH A 8 608 2 HOH HOH . J 4 HOH A 9 609 30 HOH HOH . J 4 HOH A 10 610 23 HOH HOH . J 4 HOH A 11 611 46 HOH HOH . J 4 HOH A 12 612 40 HOH HOH . J 4 HOH A 13 613 4 HOH HOH . J 4 HOH A 14 614 15 HOH HOH . J 4 HOH A 15 615 10 HOH HOH . J 4 HOH A 16 616 17 HOH HOH . J 4 HOH A 17 617 1 HOH HOH . J 4 HOH A 18 618 39 HOH HOH . J 4 HOH A 19 619 29 HOH HOH . J 4 HOH A 20 620 18 HOH HOH . J 4 HOH A 21 621 42 HOH HOH . J 4 HOH A 22 622 8 HOH HOH . J 4 HOH A 23 623 33 HOH HOH . J 4 HOH A 24 624 37 HOH HOH . J 4 HOH A 25 625 45 HOH HOH . J 4 HOH A 26 626 7 HOH HOH . J 4 HOH A 27 627 34 HOH HOH . J 4 HOH A 28 628 13 HOH HOH . J 4 HOH A 29 629 38 HOH HOH . J 4 HOH A 30 630 14 HOH HOH . J 4 HOH A 31 631 9 HOH HOH . J 4 HOH A 32 632 43 HOH HOH . J 4 HOH A 33 633 35 HOH HOH . K 4 HOH B 1 601 21 HOH HOH . K 4 HOH B 2 602 32 HOH HOH . K 4 HOH B 3 603 19 HOH HOH . K 4 HOH B 4 604 5 HOH HOH . K 4 HOH B 5 605 41 HOH HOH . K 4 HOH B 6 606 16 HOH HOH . K 4 HOH B 7 607 3 HOH HOH . K 4 HOH B 8 608 25 HOH HOH . K 4 HOH B 9 609 6 HOH HOH . K 4 HOH B 10 610 12 HOH HOH . K 4 HOH B 11 611 26 HOH HOH . K 4 HOH B 12 612 36 HOH HOH . K 4 HOH B 13 613 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.425 _atom_site.Cartn_y 34.673 _atom_site.Cartn_z 13.51 _atom_site.occupancy 0.63 _atom_site.B_iso_or_equiv 71.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #