data_5K2A # _model_server_result.job_id sG74JIc-B9KTofE7qde8bw _model_server_result.datetime_utc '2024-11-22 18:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5K2A # _exptl.entry_id 5K2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K2A _cell.length_a 40.35 _cell.length_b 180.5 _cell.length_c 142.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 5K2A _atom_sites.fract_transf_matrix[1][1] 0.024783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1 ZMA ZMA . C 3 NA A 1 1202 2 NA NA . D 4 CLR A 1 1203 3 CLR CLR . E 4 CLR A 1 1204 4 CLR CLR . F 4 CLR A 1 1205 5 CLR CLR . G 5 OLC A 1 1206 11 OLC OLC . H 5 OLC A 1 1207 12 OLC OLC . I 5 OLC A 1 1208 13 OLC OLC . J 5 OLC A 1 1209 14 OLC OLC . K 5 OLC A 1 1210 15 OLC OLC . L 5 OLC A 1 1211 16 OLC OLC . M 5 OLC A 1 1212 17 OLC OLC . N 5 OLC A 1 1213 18 OLC OLC . O 5 OLC A 1 1214 19 OLC OLC . P 6 OLA A 1 1215 25 OLA OLA . Q 6 OLA A 1 1216 26 OLA OLA . R 6 OLA A 1 1217 27 OLA OLA . S 6 OLA A 1 1218 28 OLA OLA . T 6 OLA A 1 1219 30 OLA OLA . U 6 OLA A 1 1220 31 OLA OLA . V 6 OLA A 1 1221 33 OLA OLA . W 6 OLA A 1 1222 37 OLA OLA . X 6 OLA A 1 1223 38 OLA OLA . Y 6 OLA A 1 1224 41 OLA OLA . Z 7 PEG A 1 1225 49 PEG PEG . AA 5 OLC A 1 1226 1 OLC OLC . BA 8 HOH A 1 1301 76 HOH HOH . BA 8 HOH A 2 1302 69 HOH HOH . BA 8 HOH A 3 1303 47 HOH HOH . BA 8 HOH A 4 1304 1 HOH HOH . BA 8 HOH A 5 1305 4 HOH HOH . BA 8 HOH A 6 1306 62 HOH HOH . BA 8 HOH A 7 1307 27 HOH HOH . BA 8 HOH A 8 1308 3 HOH HOH . BA 8 HOH A 9 1309 7 HOH HOH . BA 8 HOH A 10 1310 15 HOH HOH . BA 8 HOH A 11 1311 80 HOH HOH . BA 8 HOH A 12 1312 93 HOH HOH . BA 8 HOH A 13 1313 56 HOH HOH . BA 8 HOH A 14 1314 87 HOH HOH . BA 8 HOH A 15 1315 6 HOH HOH . BA 8 HOH A 16 1316 24 HOH HOH . BA 8 HOH A 17 1317 71 HOH HOH . BA 8 HOH A 18 1318 10 HOH HOH . BA 8 HOH A 19 1319 44 HOH HOH . BA 8 HOH A 20 1320 20 HOH HOH . BA 8 HOH A 21 1321 51 HOH HOH . BA 8 HOH A 22 1322 8 HOH HOH . BA 8 HOH A 23 1323 2 HOH HOH . BA 8 HOH A 24 1324 5 HOH HOH . BA 8 HOH A 25 1325 60 HOH HOH . BA 8 HOH A 26 1326 68 HOH HOH . BA 8 HOH A 27 1327 37 HOH HOH . BA 8 HOH A 28 1328 12 HOH HOH . BA 8 HOH A 29 1329 38 HOH HOH . BA 8 HOH A 30 1330 33 HOH HOH . BA 8 HOH A 31 1331 67 HOH HOH . BA 8 HOH A 32 1332 42 HOH HOH . BA 8 HOH A 33 1333 34 HOH HOH . BA 8 HOH A 34 1334 14 HOH HOH . BA 8 HOH A 35 1335 53 HOH HOH . BA 8 HOH A 36 1336 13 HOH HOH . BA 8 HOH A 37 1337 43 HOH HOH . BA 8 HOH A 38 1338 23 HOH HOH . BA 8 HOH A 39 1339 19 HOH HOH . BA 8 HOH A 40 1340 11 HOH HOH . BA 8 HOH A 41 1341 18 HOH HOH . BA 8 HOH A 42 1342 77 HOH HOH . BA 8 HOH A 43 1343 36 HOH HOH . BA 8 HOH A 44 1344 25 HOH HOH . BA 8 HOH A 45 1345 94 HOH HOH . BA 8 HOH A 46 1346 30 HOH HOH . BA 8 HOH A 47 1347 35 HOH HOH . BA 8 HOH A 48 1348 41 HOH HOH . BA 8 HOH A 49 1349 61 HOH HOH . BA 8 HOH A 50 1350 64 HOH HOH . BA 8 HOH A 51 1351 65 HOH HOH . BA 8 HOH A 52 1352 29 HOH HOH . BA 8 HOH A 53 1353 16 HOH HOH . BA 8 HOH A 54 1354 9 HOH HOH . BA 8 HOH A 55 1355 46 HOH HOH . BA 8 HOH A 56 1356 72 HOH HOH . BA 8 HOH A 57 1357 73 HOH HOH . BA 8 HOH A 58 1358 21 HOH HOH . BA 8 HOH A 59 1359 31 HOH HOH . BA 8 HOH A 60 1360 81 HOH HOH . BA 8 HOH A 61 1361 78 HOH HOH . BA 8 HOH A 62 1362 40 HOH HOH . BA 8 HOH A 63 1363 57 HOH HOH . BA 8 HOH A 64 1364 26 HOH HOH . BA 8 HOH A 65 1365 59 HOH HOH . BA 8 HOH A 66 1366 55 HOH HOH . BA 8 HOH A 67 1367 83 HOH HOH . BA 8 HOH A 68 1368 58 HOH HOH . BA 8 HOH A 69 1369 92 HOH HOH . BA 8 HOH A 70 1370 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 4 18.823 100.709 48.806 1 43.6 ? C1 CLR 1203 A 1 HETATM 2 C C2 CLR . . . D 4 18.36 102.128 48.497 1 46.23 ? C2 CLR 1203 A 1 HETATM 3 C C3 CLR . . . D 4 18.595 102.462 47.031 1 48.12 ? C3 CLR 1203 A 1 HETATM 4 C C4 CLR . . . D 4 17.762 101.52 46.173 1 47.97 ? C4 CLR 1203 A 1 HETATM 5 C C5 CLR . . . D 4 18.088 100.09 46.534 1 41.55 ? C5 CLR 1203 A 1 HETATM 6 C C6 CLR . . . D 4 18.389 99.231 45.548 1 60.59 ? C6 CLR 1203 A 1 HETATM 7 C C7 CLR . . . D 4 18.431 97.728 45.71 1 57.28 ? C7 CLR 1203 A 1 HETATM 8 C C8 CLR . . . D 4 18.27 97.282 47.156 1 43.54 ? C8 CLR 1203 A 1 HETATM 9 C C9 CLR . . . D 4 18.769 98.324 48.149 1 45.91 ? C9 CLR 1203 A 1 HETATM 10 C C10 CLR . . . D 4 18.073 99.668 47.982 1 50.69 ? C10 CLR 1203 A 1 HETATM 11 C C11 CLR . . . D 4 18.647 97.81 49.587 1 44.82 ? C11 CLR 1203 A 1 HETATM 12 C C12 CLR . . . D 4 19.324 96.455 49.805 1 44.88 ? C12 CLR 1203 A 1 HETATM 13 C C13 CLR . . . D 4 18.839 95.438 48.779 1 53.94 ? C13 CLR 1203 A 1 HETATM 14 C C14 CLR . . . D 4 19.078 96.018 47.403 1 57.66 ? C14 CLR 1203 A 1 HETATM 15 C C15 CLR . . . D 4 18.879 94.858 46.44 1 52.4 ? C15 CLR 1203 A 1 HETATM 16 C C16 CLR . . . D 4 19.401 93.659 47.234 1 61.5 ? C16 CLR 1203 A 1 HETATM 17 C C17 CLR . . . D 4 19.592 94.115 48.685 1 48.94 ? C17 CLR 1203 A 1 HETATM 18 C C18 CLR . . . D 4 17.353 95.15 48.964 1 45.95 ? C18 CLR 1203 A 1 HETATM 19 C C19 CLR . . . D 4 16.623 99.58 48.445 1 41.79 ? C19 CLR 1203 A 1 HETATM 20 C C20 CLR . . . D 4 19.163 93.019 49.663 1 63.02 ? C20 CLR 1203 A 1 HETATM 21 C C21 CLR . . . D 4 19.657 93.269 51.087 1 46.1 ? C21 CLR 1203 A 1 HETATM 22 C C22 CLR . . . D 4 19.633 91.661 49.143 1 53.99 ? C22 CLR 1203 A 1 HETATM 23 C C23 CLR . . . D 4 19.983 90.681 50.258 1 54.51 ? C23 CLR 1203 A 1 HETATM 24 C C24 CLR . . . D 4 20.81 89.526 49.708 1 66.67 ? C24 CLR 1203 A 1 HETATM 25 C C25 CLR . . . D 4 20.808 88.329 50.651 1 71.97 ? C25 CLR 1203 A 1 HETATM 26 C C26 CLR . . . D 4 21.705 87.218 50.116 1 73.85 ? C26 CLR 1203 A 1 HETATM 27 C C27 CLR . . . D 4 21.229 88.736 52.058 1 68.1 ? C27 CLR 1203 A 1 HETATM 28 O O1 CLR . . . D 4 18.202 103.816 46.78 1 46.06 ? O1 CLR 1203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #