data_5K2A
#
_model_server_result.job_id            v6mFMDBjkSiYBq_bEfYjjQ 
_model_server_result.datetime_utc      '2024-11-22 18:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    5K2A 
#
_exptl.entry_id    5K2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.654 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CHOLESTEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K2A 
_cell.length_a            40.35 
_cell.length_b            180.5 
_cell.length_c            142.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc3 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc4 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc5 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
#
_chem_comp.formula           'C27 H46 O' 
_chem_comp.formula_weight    386.654 
_chem_comp.id                CLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CHOLESTEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CLR sing 70 n n 
C1 C10 CLR sing 71 n n 
C1 H11 CLR sing 72 n n 
C1 H12 CLR sing 73 n n 
C2 C3 CLR sing 74 n n 
C2 H21 CLR sing 75 n n 
C2 H22 CLR sing 76 n n 
C3 C4 CLR sing 77 n n 
C3 O1 CLR sing 78 n n 
C3 H3 CLR sing 79 n n 
C4 C5 CLR sing 80 n n 
C4 H41 CLR sing 81 n n 
C4 H42 CLR sing 82 n n 
C5 C6 CLR doub 83 n n 
C5 C10 CLR sing 84 n n 
C6 C7 CLR sing 85 n n 
C6 H6 CLR sing 86 n n 
C7 C8 CLR sing 87 n n 
C7 H71 CLR sing 88 n n 
C7 H72 CLR sing 89 n n 
C8 C9 CLR sing 90 n n 
C8 C14 CLR sing 91 n n 
C8 H8 CLR sing 92 n n 
C9 C10 CLR sing 93 n n 
C9 C11 CLR sing 94 n n 
C9 H9 CLR sing 95 n n 
C10 C19 CLR sing 96 n n 
C11 C12 CLR sing 97 n n 
C11 H111 CLR sing 98 n n 
C11 H112 CLR sing 99 n n 
C12 C13 CLR sing 100 n n 
C12 H121 CLR sing 101 n n 
C12 H122 CLR sing 102 n n 
C13 C14 CLR sing 103 n n 
C13 C17 CLR sing 104 n n 
C13 C18 CLR sing 105 n n 
C14 C15 CLR sing 106 n n 
C14 H14 CLR sing 107 n n 
C15 C16 CLR sing 108 n n 
C15 H151 CLR sing 109 n n 
C15 H152 CLR sing 110 n n 
C16 C17 CLR sing 111 n n 
C16 H161 CLR sing 112 n n 
C16 H162 CLR sing 113 n n 
C17 C20 CLR sing 114 n n 
C17 H17 CLR sing 115 n n 
C18 H181 CLR sing 116 n n 
C18 H182 CLR sing 117 n n 
C18 H183 CLR sing 118 n n 
C19 H191 CLR sing 119 n n 
C19 H192 CLR sing 120 n n 
C19 H193 CLR sing 121 n n 
C20 C21 CLR sing 122 n n 
C20 C22 CLR sing 123 n n 
C20 H20 CLR sing 124 n n 
C21 H211 CLR sing 125 n n 
C21 H212 CLR sing 126 n n 
C21 H213 CLR sing 127 n n 
C22 C23 CLR sing 128 n n 
C22 H221 CLR sing 129 n n 
C22 H222 CLR sing 130 n n 
C23 C24 CLR sing 131 n n 
C23 H231 CLR sing 132 n n 
C23 H232 CLR sing 133 n n 
C24 C25 CLR sing 134 n n 
C24 H241 CLR sing 135 n n 
C24 H242 CLR sing 136 n n 
C25 C26 CLR sing 137 n n 
C25 C27 CLR sing 138 n n 
C25 H25 CLR sing 139 n n 
C26 H261 CLR sing 140 n n 
C26 H262 CLR sing 141 n n 
C26 H263 CLR sing 142 n n 
C27 H271 CLR sing 143 n n 
C27 H272 CLR sing 144 n n 
C27 H273 CLR sing 145 n n 
O1 H1 CLR sing 146 n n 
#
_atom_sites.entry_id                     5K2A 
_atom_sites.fract_transf_matrix[1][1]    0.024783 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 1201 1 ZMA ZMA . 
C 3 NA A 1 1202 2 NA NA . 
D 4 CLR A 1 1203 3 CLR CLR . 
E 4 CLR A 1 1204 4 CLR CLR . 
F 4 CLR A 1 1205 5 CLR CLR . 
G 5 OLC A 1 1206 11 OLC OLC . 
H 5 OLC A 1 1207 12 OLC OLC . 
I 5 OLC A 1 1208 13 OLC OLC . 
J 5 OLC A 1 1209 14 OLC OLC . 
K 5 OLC A 1 1210 15 OLC OLC . 
L 5 OLC A 1 1211 16 OLC OLC . 
M 5 OLC A 1 1212 17 OLC OLC . 
N 5 OLC A 1 1213 18 OLC OLC . 
O 5 OLC A 1 1214 19 OLC OLC . 
P 6 OLA A 1 1215 25 OLA OLA . 
Q 6 OLA A 1 1216 26 OLA OLA . 
R 6 OLA A 1 1217 27 OLA OLA . 
S 6 OLA A 1 1218 28 OLA OLA . 
T 6 OLA A 1 1219 30 OLA OLA . 
U 6 OLA A 1 1220 31 OLA OLA . 
V 6 OLA A 1 1221 33 OLA OLA . 
W 6 OLA A 1 1222 37 OLA OLA . 
X 6 OLA A 1 1223 38 OLA OLA . 
Y 6 OLA A 1 1224 41 OLA OLA . 
Z 7 PEG A 1 1225 49 PEG PEG . 
AA 5 OLC A 1 1226 1 OLC OLC . 
BA 8 HOH A 1 1301 76 HOH HOH . 
BA 8 HOH A 2 1302 69 HOH HOH . 
BA 8 HOH A 3 1303 47 HOH HOH . 
BA 8 HOH A 4 1304 1 HOH HOH . 
BA 8 HOH A 5 1305 4 HOH HOH . 
BA 8 HOH A 6 1306 62 HOH HOH . 
BA 8 HOH A 7 1307 27 HOH HOH . 
BA 8 HOH A 8 1308 3 HOH HOH . 
BA 8 HOH A 9 1309 7 HOH HOH . 
BA 8 HOH A 10 1310 15 HOH HOH . 
BA 8 HOH A 11 1311 80 HOH HOH . 
BA 8 HOH A 12 1312 93 HOH HOH . 
BA 8 HOH A 13 1313 56 HOH HOH . 
BA 8 HOH A 14 1314 87 HOH HOH . 
BA 8 HOH A 15 1315 6 HOH HOH . 
BA 8 HOH A 16 1316 24 HOH HOH . 
BA 8 HOH A 17 1317 71 HOH HOH . 
BA 8 HOH A 18 1318 10 HOH HOH . 
BA 8 HOH A 19 1319 44 HOH HOH . 
BA 8 HOH A 20 1320 20 HOH HOH . 
BA 8 HOH A 21 1321 51 HOH HOH . 
BA 8 HOH A 22 1322 8 HOH HOH . 
BA 8 HOH A 23 1323 2 HOH HOH . 
BA 8 HOH A 24 1324 5 HOH HOH . 
BA 8 HOH A 25 1325 60 HOH HOH . 
BA 8 HOH A 26 1326 68 HOH HOH . 
BA 8 HOH A 27 1327 37 HOH HOH . 
BA 8 HOH A 28 1328 12 HOH HOH . 
BA 8 HOH A 29 1329 38 HOH HOH . 
BA 8 HOH A 30 1330 33 HOH HOH . 
BA 8 HOH A 31 1331 67 HOH HOH . 
BA 8 HOH A 32 1332 42 HOH HOH . 
BA 8 HOH A 33 1333 34 HOH HOH . 
BA 8 HOH A 34 1334 14 HOH HOH . 
BA 8 HOH A 35 1335 53 HOH HOH . 
BA 8 HOH A 36 1336 13 HOH HOH . 
BA 8 HOH A 37 1337 43 HOH HOH . 
BA 8 HOH A 38 1338 23 HOH HOH . 
BA 8 HOH A 39 1339 19 HOH HOH . 
BA 8 HOH A 40 1340 11 HOH HOH . 
BA 8 HOH A 41 1341 18 HOH HOH . 
BA 8 HOH A 42 1342 77 HOH HOH . 
BA 8 HOH A 43 1343 36 HOH HOH . 
BA 8 HOH A 44 1344 25 HOH HOH . 
BA 8 HOH A 45 1345 94 HOH HOH . 
BA 8 HOH A 46 1346 30 HOH HOH . 
BA 8 HOH A 47 1347 35 HOH HOH . 
BA 8 HOH A 48 1348 41 HOH HOH . 
BA 8 HOH A 49 1349 61 HOH HOH . 
BA 8 HOH A 50 1350 64 HOH HOH . 
BA 8 HOH A 51 1351 65 HOH HOH . 
BA 8 HOH A 52 1352 29 HOH HOH . 
BA 8 HOH A 53 1353 16 HOH HOH . 
BA 8 HOH A 54 1354 9 HOH HOH . 
BA 8 HOH A 55 1355 46 HOH HOH . 
BA 8 HOH A 56 1356 72 HOH HOH . 
BA 8 HOH A 57 1357 73 HOH HOH . 
BA 8 HOH A 58 1358 21 HOH HOH . 
BA 8 HOH A 59 1359 31 HOH HOH . 
BA 8 HOH A 60 1360 81 HOH HOH . 
BA 8 HOH A 61 1361 78 HOH HOH . 
BA 8 HOH A 62 1362 40 HOH HOH . 
BA 8 HOH A 63 1363 57 HOH HOH . 
BA 8 HOH A 64 1364 26 HOH HOH . 
BA 8 HOH A 65 1365 59 HOH HOH . 
BA 8 HOH A 66 1366 55 HOH HOH . 
BA 8 HOH A 67 1367 83 HOH HOH . 
BA 8 HOH A 68 1368 58 HOH HOH . 
BA 8 HOH A 69 1369 92 HOH HOH . 
BA 8 HOH A 70 1370 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CLR . . . E 4 -11.866 100.823 57.402 1 46 ? C1 CLR 1204 A 1 
HETATM 2 C C2 CLR . . . E 4 -11.813 102.344 57.35 1 47.5 ? C2 CLR 1204 A 1 
HETATM 3 C C3 CLR . . . E 4 -13.188 102.942 57.618 1 53.49 ? C3 CLR 1204 A 1 
HETATM 4 C C4 CLR . . . E 4 -13.658 102.534 59.01 1 44.52 ? C4 CLR 1204 A 1 
HETATM 5 C C5 CLR . . . E 4 -13.553 101.035 59.184 1 60 ? C5 CLR 1204 A 1 
HETATM 6 C C6 CLR . . . E 4 -14.601 100.369 59.694 1 52.08 ? C6 CLR 1204 A 1 
HETATM 7 C C7 CLR . . . E 4 -14.52 98.968 60.26 1 50.14 ? C7 CLR 1204 A 1 
HETATM 8 C C8 CLR . . . E 4 -13.175 98.303 59.995 1 69.6 ? C8 CLR 1204 A 1 
HETATM 9 C C9 CLR . . . E 4 -12.512 98.829 58.726 1 48.91 ? C9 CLR 1204 A 1 
HETATM 10 C C10 CLR . . . E 4 -12.281 100.333 58.783 1 49.04 ? C10 CLR 1204 A 1 
HETATM 11 C C11 CLR . . . E 4 -11.206 98.084 58.441 1 57.33 ? C11 CLR 1204 A 1 
HETATM 12 C C12 CLR . . . E 4 -11.372 96.563 58.411 1 46.55 ? C12 CLR 1204 A 1 
HETATM 13 C C13 CLR . . . E 4 -12.045 96.06 59.682 1 55.68 ? C13 CLR 1204 A 1 
HETATM 14 C C14 CLR . . . E 4 -13.357 96.804 59.815 1 65.67 ? C14 CLR 1204 A 1 
HETATM 15 C C15 CLR . . . E 4 -14.137 96.054 60.884 1 50.2 ? C15 CLR 1204 A 1 
HETATM 16 C C16 CLR . . . E 4 -13.711 94.602 60.664 1 48.14 ? C16 CLR 1204 A 1 
HETATM 17 C C17 CLR . . . E 4 -12.523 94.609 59.695 1 59.16 ? C17 CLR 1204 A 1 
HETATM 18 C C18 CLR . . . E 4 -11.17 96.34 60.902 1 50.48 ? C18 CLR 1204 A 1 
HETATM 19 C C19 CLR . . . E 4 -11.199 100.668 59.802 1 56.58 ? C19 CLR 1204 A 1 
HETATM 20 C C20 CLR . . . E 4 -11.512 93.53 60.096 1 53.9 ? C20 CLR 1204 A 1 
HETATM 21 C C21 CLR . . . E 4 -10.344 93.387 59.124 1 49.18 ? C21 CLR 1204 A 1 
HETATM 22 C C22 CLR . . . E 4 -12.232 92.19 60.245 1 45.38 ? C22 CLR 1204 A 1 
HETATM 23 C C23 CLR . . . E 4 -11.28 91.002 60.134 1 55.04 ? C23 CLR 1204 A 1 
HETATM 24 C C24 CLR . . . E 4 -12.037 89.695 59.921 1 54.29 ? C24 CLR 1204 A 1 
HETATM 25 C C25 CLR . . . E 4 -11.086 88.502 59.933 1 65.69 ? C25 CLR 1204 A 1 
HETATM 26 C C26 CLR . . . E 4 -10.475 88.298 61.314 1 71.46 ? C26 CLR 1204 A 1 
HETATM 27 C C27 CLR . . . E 4 -11.784 87.237 59.448 1 77.21 ? C27 CLR 1204 A 1 
HETATM 28 O O1 CLR . . . E 4 -13.103 104.37 57.548 1 37.82 ? O1 CLR 1204 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#