data_5K2A # _model_server_result.job_id sx1IdEFwHM_4-NWxGv4g1Q _model_server_result.datetime_utc '2024-11-05 10:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 5K2A # _exptl.entry_id 5K2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K2A _cell.length_a 40.35 _cell.length_b 180.5 _cell.length_c 142.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 367 n n C10 C9 OLC doub 368 n n C10 C11 OLC sing 369 n n C9 C8 OLC sing 370 n n C17 C16 OLC sing 371 z n C11 C12 OLC sing 372 n n C8 C7 OLC sing 373 n n C24 C22 OLC sing 374 n n C24 O25 OLC sing 375 n n C16 C15 OLC sing 376 n n C12 C13 OLC sing 377 n n C7 C6 OLC sing 378 n n C15 C14 OLC sing 379 n n C13 C14 OLC sing 380 n n C6 C5 OLC sing 381 n n C5 C4 OLC sing 382 n n C4 C3 OLC sing 383 n n C3 C2 OLC sing 384 n n C2 C1 OLC sing 385 n n C21 C22 OLC sing 386 n n C21 O20 OLC sing 387 n n C1 O19 OLC doub 388 n n C1 O20 OLC sing 389 n n C22 O23 OLC sing 390 n n C18 H18 OLC sing 391 n n C18 H18A OLC sing 392 n n C18 H18B OLC sing 393 n n C10 H10 OLC sing 394 n n C9 H9 OLC sing 395 n n C17 H17 OLC sing 396 n n C17 H17A OLC sing 397 n n C11 H11 OLC sing 398 n n C11 H11A OLC sing 399 n n C8 H8 OLC sing 400 n n C8 H8A OLC sing 401 n n C24 H24 OLC sing 402 n n C24 H24A OLC sing 403 n n C16 H16 OLC sing 404 n n C16 H16A OLC sing 405 n n C12 H12 OLC sing 406 n n C12 H12A OLC sing 407 n n C7 H7 OLC sing 408 n n C7 H7A OLC sing 409 n n C15 H15 OLC sing 410 n n C15 H15A OLC sing 411 n n C13 H13 OLC sing 412 n n C13 H13A OLC sing 413 n n C6 H6 OLC sing 414 n n C6 H6A OLC sing 415 n n C14 H14 OLC sing 416 n n C14 H14A OLC sing 417 n n C5 H5 OLC sing 418 n n C5 H5A OLC sing 419 n n C4 H4 OLC sing 420 n n C4 H4A OLC sing 421 n n C3 H3 OLC sing 422 n n C3 H3A OLC sing 423 n n C2 H2 OLC sing 424 n n C2 H2A OLC sing 425 n n C21 H21 OLC sing 426 n n C21 H21A OLC sing 427 n n C22 H22 OLC sing 428 n n O25 HO25 OLC sing 429 n n O23 HO23 OLC sing 430 n n # _atom_sites.entry_id 5K2A _atom_sites.fract_transf_matrix[1][1] 0.024783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1 ZMA ZMA . C 3 NA A 1 1202 2 NA NA . D 4 CLR A 1 1203 3 CLR CLR . E 4 CLR A 1 1204 4 CLR CLR . F 4 CLR A 1 1205 5 CLR CLR . G 5 OLC A 1 1206 11 OLC OLC . H 5 OLC A 1 1207 12 OLC OLC . I 5 OLC A 1 1208 13 OLC OLC . J 5 OLC A 1 1209 14 OLC OLC . K 5 OLC A 1 1210 15 OLC OLC . L 5 OLC A 1 1211 16 OLC OLC . M 5 OLC A 1 1212 17 OLC OLC . N 5 OLC A 1 1213 18 OLC OLC . O 5 OLC A 1 1214 19 OLC OLC . P 6 OLA A 1 1215 25 OLA OLA . Q 6 OLA A 1 1216 26 OLA OLA . R 6 OLA A 1 1217 27 OLA OLA . S 6 OLA A 1 1218 28 OLA OLA . T 6 OLA A 1 1219 30 OLA OLA . U 6 OLA A 1 1220 31 OLA OLA . V 6 OLA A 1 1221 33 OLA OLA . W 6 OLA A 1 1222 37 OLA OLA . X 6 OLA A 1 1223 38 OLA OLA . Y 6 OLA A 1 1224 41 OLA OLA . Z 7 PEG A 1 1225 49 PEG PEG . AA 5 OLC A 1 1226 1 OLC OLC . BA 8 HOH A 1 1301 76 HOH HOH . BA 8 HOH A 2 1302 69 HOH HOH . BA 8 HOH A 3 1303 47 HOH HOH . BA 8 HOH A 4 1304 1 HOH HOH . BA 8 HOH A 5 1305 4 HOH HOH . BA 8 HOH A 6 1306 62 HOH HOH . BA 8 HOH A 7 1307 27 HOH HOH . BA 8 HOH A 8 1308 3 HOH HOH . BA 8 HOH A 9 1309 7 HOH HOH . BA 8 HOH A 10 1310 15 HOH HOH . BA 8 HOH A 11 1311 80 HOH HOH . BA 8 HOH A 12 1312 93 HOH HOH . BA 8 HOH A 13 1313 56 HOH HOH . BA 8 HOH A 14 1314 87 HOH HOH . BA 8 HOH A 15 1315 6 HOH HOH . BA 8 HOH A 16 1316 24 HOH HOH . BA 8 HOH A 17 1317 71 HOH HOH . BA 8 HOH A 18 1318 10 HOH HOH . BA 8 HOH A 19 1319 44 HOH HOH . BA 8 HOH A 20 1320 20 HOH HOH . BA 8 HOH A 21 1321 51 HOH HOH . BA 8 HOH A 22 1322 8 HOH HOH . BA 8 HOH A 23 1323 2 HOH HOH . BA 8 HOH A 24 1324 5 HOH HOH . BA 8 HOH A 25 1325 60 HOH HOH . BA 8 HOH A 26 1326 68 HOH HOH . BA 8 HOH A 27 1327 37 HOH HOH . BA 8 HOH A 28 1328 12 HOH HOH . BA 8 HOH A 29 1329 38 HOH HOH . BA 8 HOH A 30 1330 33 HOH HOH . BA 8 HOH A 31 1331 67 HOH HOH . BA 8 HOH A 32 1332 42 HOH HOH . BA 8 HOH A 33 1333 34 HOH HOH . BA 8 HOH A 34 1334 14 HOH HOH . BA 8 HOH A 35 1335 53 HOH HOH . BA 8 HOH A 36 1336 13 HOH HOH . BA 8 HOH A 37 1337 43 HOH HOH . BA 8 HOH A 38 1338 23 HOH HOH . BA 8 HOH A 39 1339 19 HOH HOH . BA 8 HOH A 40 1340 11 HOH HOH . BA 8 HOH A 41 1341 18 HOH HOH . BA 8 HOH A 42 1342 77 HOH HOH . BA 8 HOH A 43 1343 36 HOH HOH . BA 8 HOH A 44 1344 25 HOH HOH . BA 8 HOH A 45 1345 94 HOH HOH . BA 8 HOH A 46 1346 30 HOH HOH . BA 8 HOH A 47 1347 35 HOH HOH . BA 8 HOH A 48 1348 41 HOH HOH . BA 8 HOH A 49 1349 61 HOH HOH . BA 8 HOH A 50 1350 64 HOH HOH . BA 8 HOH A 51 1351 65 HOH HOH . BA 8 HOH A 52 1352 29 HOH HOH . BA 8 HOH A 53 1353 16 HOH HOH . BA 8 HOH A 54 1354 9 HOH HOH . BA 8 HOH A 55 1355 46 HOH HOH . BA 8 HOH A 56 1356 72 HOH HOH . BA 8 HOH A 57 1357 73 HOH HOH . BA 8 HOH A 58 1358 21 HOH HOH . BA 8 HOH A 59 1359 31 HOH HOH . BA 8 HOH A 60 1360 81 HOH HOH . BA 8 HOH A 61 1361 78 HOH HOH . BA 8 HOH A 62 1362 40 HOH HOH . BA 8 HOH A 63 1363 57 HOH HOH . BA 8 HOH A 64 1364 26 HOH HOH . BA 8 HOH A 65 1365 59 HOH HOH . BA 8 HOH A 66 1366 55 HOH HOH . BA 8 HOH A 67 1367 83 HOH HOH . BA 8 HOH A 68 1368 58 HOH HOH . BA 8 HOH A 69 1369 92 HOH HOH . BA 8 HOH A 70 1370 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . I 5 16.015 81.971 52.974 1 59.25 ? C10 OLC 1208 A 1 HETATM 2 C C9 OLC . . . I 5 16.155 80.76 53.506 1 63.14 ? C9 OLC 1208 A 1 HETATM 3 C C8 OLC . . . I 5 15.742 79.538 52.718 1 56.79 ? C8 OLC 1208 A 1 HETATM 4 C C24 OLC . . . I 5 15.392 65.875 52.627 1 82.97 ? C24 OLC 1208 A 1 HETATM 5 C C7 OLC . . . I 5 16.163 78.281 53.469 1 61.38 ? C7 OLC 1208 A 1 HETATM 6 C C6 OLC . . . I 5 15.736 77.024 52.719 1 55.44 ? C6 OLC 1208 A 1 HETATM 7 C C5 OLC . . . I 5 16.019 75.771 53.542 1 62.96 ? C5 OLC 1208 A 1 HETATM 8 C C4 OLC . . . I 5 15.696 74.524 52.729 1 71.88 ? C4 OLC 1208 A 1 HETATM 9 C C3 OLC . . . I 5 15.838 73.237 53.535 1 78.21 ? C3 OLC 1208 A 1 HETATM 10 C C2 OLC . . . I 5 15.251 72.09 52.721 1 97.06 ? C2 OLC 1208 A 1 HETATM 11 C C21 OLC . . . I 5 15.085 68.26 53.282 1 74.25 ? C21 OLC 1208 A 1 HETATM 12 C C1 OLC . . . I 5 15.445 70.752 53.393 1 93.34 ? C1 OLC 1208 A 1 HETATM 13 C C22 OLC . . . I 5 14.807 67.217 52.204 1 80.39 ? C22 OLC 1208 A 1 HETATM 14 O O19 OLC . . . I 5 15.916 70.665 54.515 1 88.87 ? O19 OLC 1208 A 1 HETATM 15 O O25 OLC . . . I 5 15.461 65.007 51.489 1 93.15 ? O25 OLC 1208 A 1 HETATM 16 O O23 OLC . . . I 5 13.394 67.08 52.016 1 78.35 ? O23 OLC 1208 A 1 HETATM 17 O O20 OLC . . . I 5 15.06 69.548 52.672 1 97.02 ? O20 OLC 1208 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #