data_5K2A
#
_model_server_result.job_id            aqVN9HdKsEH7-wT-9ry3Ew 
_model_server_result.datetime_utc      '2024-11-22 19:01:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1211}' 
#
_entry.id    5K2A 
#
_exptl.entry_id    5K2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K2A 
_cell.length_a            40.35 
_cell.length_b            180.5 
_cell.length_c            142.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc3 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc4 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc5 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 367 n n 
C10 C9 OLC doub 368 n n 
C10 C11 OLC sing 369 n n 
C9 C8 OLC sing 370 n n 
C17 C16 OLC sing 371 z n 
C11 C12 OLC sing 372 n n 
C8 C7 OLC sing 373 n n 
C24 C22 OLC sing 374 n n 
C24 O25 OLC sing 375 n n 
C16 C15 OLC sing 376 n n 
C12 C13 OLC sing 377 n n 
C7 C6 OLC sing 378 n n 
C15 C14 OLC sing 379 n n 
C13 C14 OLC sing 380 n n 
C6 C5 OLC sing 381 n n 
C5 C4 OLC sing 382 n n 
C4 C3 OLC sing 383 n n 
C3 C2 OLC sing 384 n n 
C2 C1 OLC sing 385 n n 
C21 C22 OLC sing 386 n n 
C21 O20 OLC sing 387 n n 
C1 O19 OLC doub 388 n n 
C1 O20 OLC sing 389 n n 
C22 O23 OLC sing 390 n n 
C18 H18 OLC sing 391 n n 
C18 H18A OLC sing 392 n n 
C18 H18B OLC sing 393 n n 
C10 H10 OLC sing 394 n n 
C9 H9 OLC sing 395 n n 
C17 H17 OLC sing 396 n n 
C17 H17A OLC sing 397 n n 
C11 H11 OLC sing 398 n n 
C11 H11A OLC sing 399 n n 
C8 H8 OLC sing 400 n n 
C8 H8A OLC sing 401 n n 
C24 H24 OLC sing 402 n n 
C24 H24A OLC sing 403 n n 
C16 H16 OLC sing 404 n n 
C16 H16A OLC sing 405 n n 
C12 H12 OLC sing 406 n n 
C12 H12A OLC sing 407 n n 
C7 H7 OLC sing 408 n n 
C7 H7A OLC sing 409 n n 
C15 H15 OLC sing 410 n n 
C15 H15A OLC sing 411 n n 
C13 H13 OLC sing 412 n n 
C13 H13A OLC sing 413 n n 
C6 H6 OLC sing 414 n n 
C6 H6A OLC sing 415 n n 
C14 H14 OLC sing 416 n n 
C14 H14A OLC sing 417 n n 
C5 H5 OLC sing 418 n n 
C5 H5A OLC sing 419 n n 
C4 H4 OLC sing 420 n n 
C4 H4A OLC sing 421 n n 
C3 H3 OLC sing 422 n n 
C3 H3A OLC sing 423 n n 
C2 H2 OLC sing 424 n n 
C2 H2A OLC sing 425 n n 
C21 H21 OLC sing 426 n n 
C21 H21A OLC sing 427 n n 
C22 H22 OLC sing 428 n n 
O25 HO25 OLC sing 429 n n 
O23 HO23 OLC sing 430 n n 
#
_atom_sites.entry_id                     5K2A 
_atom_sites.fract_transf_matrix[1][1]    0.024783 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 1201 1 ZMA ZMA . 
C 3 NA A 1 1202 2 NA NA . 
D 4 CLR A 1 1203 3 CLR CLR . 
E 4 CLR A 1 1204 4 CLR CLR . 
F 4 CLR A 1 1205 5 CLR CLR . 
G 5 OLC A 1 1206 11 OLC OLC . 
H 5 OLC A 1 1207 12 OLC OLC . 
I 5 OLC A 1 1208 13 OLC OLC . 
J 5 OLC A 1 1209 14 OLC OLC . 
K 5 OLC A 1 1210 15 OLC OLC . 
L 5 OLC A 1 1211 16 OLC OLC . 
M 5 OLC A 1 1212 17 OLC OLC . 
N 5 OLC A 1 1213 18 OLC OLC . 
O 5 OLC A 1 1214 19 OLC OLC . 
P 6 OLA A 1 1215 25 OLA OLA . 
Q 6 OLA A 1 1216 26 OLA OLA . 
R 6 OLA A 1 1217 27 OLA OLA . 
S 6 OLA A 1 1218 28 OLA OLA . 
T 6 OLA A 1 1219 30 OLA OLA . 
U 6 OLA A 1 1220 31 OLA OLA . 
V 6 OLA A 1 1221 33 OLA OLA . 
W 6 OLA A 1 1222 37 OLA OLA . 
X 6 OLA A 1 1223 38 OLA OLA . 
Y 6 OLA A 1 1224 41 OLA OLA . 
Z 7 PEG A 1 1225 49 PEG PEG . 
AA 5 OLC A 1 1226 1 OLC OLC . 
BA 8 HOH A 1 1301 76 HOH HOH . 
BA 8 HOH A 2 1302 69 HOH HOH . 
BA 8 HOH A 3 1303 47 HOH HOH . 
BA 8 HOH A 4 1304 1 HOH HOH . 
BA 8 HOH A 5 1305 4 HOH HOH . 
BA 8 HOH A 6 1306 62 HOH HOH . 
BA 8 HOH A 7 1307 27 HOH HOH . 
BA 8 HOH A 8 1308 3 HOH HOH . 
BA 8 HOH A 9 1309 7 HOH HOH . 
BA 8 HOH A 10 1310 15 HOH HOH . 
BA 8 HOH A 11 1311 80 HOH HOH . 
BA 8 HOH A 12 1312 93 HOH HOH . 
BA 8 HOH A 13 1313 56 HOH HOH . 
BA 8 HOH A 14 1314 87 HOH HOH . 
BA 8 HOH A 15 1315 6 HOH HOH . 
BA 8 HOH A 16 1316 24 HOH HOH . 
BA 8 HOH A 17 1317 71 HOH HOH . 
BA 8 HOH A 18 1318 10 HOH HOH . 
BA 8 HOH A 19 1319 44 HOH HOH . 
BA 8 HOH A 20 1320 20 HOH HOH . 
BA 8 HOH A 21 1321 51 HOH HOH . 
BA 8 HOH A 22 1322 8 HOH HOH . 
BA 8 HOH A 23 1323 2 HOH HOH . 
BA 8 HOH A 24 1324 5 HOH HOH . 
BA 8 HOH A 25 1325 60 HOH HOH . 
BA 8 HOH A 26 1326 68 HOH HOH . 
BA 8 HOH A 27 1327 37 HOH HOH . 
BA 8 HOH A 28 1328 12 HOH HOH . 
BA 8 HOH A 29 1329 38 HOH HOH . 
BA 8 HOH A 30 1330 33 HOH HOH . 
BA 8 HOH A 31 1331 67 HOH HOH . 
BA 8 HOH A 32 1332 42 HOH HOH . 
BA 8 HOH A 33 1333 34 HOH HOH . 
BA 8 HOH A 34 1334 14 HOH HOH . 
BA 8 HOH A 35 1335 53 HOH HOH . 
BA 8 HOH A 36 1336 13 HOH HOH . 
BA 8 HOH A 37 1337 43 HOH HOH . 
BA 8 HOH A 38 1338 23 HOH HOH . 
BA 8 HOH A 39 1339 19 HOH HOH . 
BA 8 HOH A 40 1340 11 HOH HOH . 
BA 8 HOH A 41 1341 18 HOH HOH . 
BA 8 HOH A 42 1342 77 HOH HOH . 
BA 8 HOH A 43 1343 36 HOH HOH . 
BA 8 HOH A 44 1344 25 HOH HOH . 
BA 8 HOH A 45 1345 94 HOH HOH . 
BA 8 HOH A 46 1346 30 HOH HOH . 
BA 8 HOH A 47 1347 35 HOH HOH . 
BA 8 HOH A 48 1348 41 HOH HOH . 
BA 8 HOH A 49 1349 61 HOH HOH . 
BA 8 HOH A 50 1350 64 HOH HOH . 
BA 8 HOH A 51 1351 65 HOH HOH . 
BA 8 HOH A 52 1352 29 HOH HOH . 
BA 8 HOH A 53 1353 16 HOH HOH . 
BA 8 HOH A 54 1354 9 HOH HOH . 
BA 8 HOH A 55 1355 46 HOH HOH . 
BA 8 HOH A 56 1356 72 HOH HOH . 
BA 8 HOH A 57 1357 73 HOH HOH . 
BA 8 HOH A 58 1358 21 HOH HOH . 
BA 8 HOH A 59 1359 31 HOH HOH . 
BA 8 HOH A 60 1360 81 HOH HOH . 
BA 8 HOH A 61 1361 78 HOH HOH . 
BA 8 HOH A 62 1362 40 HOH HOH . 
BA 8 HOH A 63 1363 57 HOH HOH . 
BA 8 HOH A 64 1364 26 HOH HOH . 
BA 8 HOH A 65 1365 59 HOH HOH . 
BA 8 HOH A 66 1366 55 HOH HOH . 
BA 8 HOH A 67 1367 83 HOH HOH . 
BA 8 HOH A 68 1368 58 HOH HOH . 
BA 8 HOH A 69 1369 92 HOH HOH . 
BA 8 HOH A 70 1370 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . L 5 17.657 103.616 57.67 1 70.76 ? C24 OLC 1211 A 1 
HETATM 2 C C6 OLC . . . L 5 17.536 93.331 61.76 1 62.7 ? C6 OLC 1211 A 1 
HETATM 3 C C5 OLC . . . L 5 17.674 94.274 60.571 1 50.88 ? C5 OLC 1211 A 1 
HETATM 4 C C4 OLC . . . L 5 16.951 95.593 60.819 1 50.79 ? C4 OLC 1211 A 1 
HETATM 5 C C3 OLC . . . L 5 17.132 96.518 59.622 1 59.13 ? C3 OLC 1211 A 1 
HETATM 6 C C2 OLC . . . L 5 16.494 97.884 59.846 1 59.32 ? C2 OLC 1211 A 1 
HETATM 7 C C21 OLC . . . L 5 17.467 101.179 58.103 1 71.59 ? C21 OLC 1211 A 1 
HETATM 8 C C1 OLC . . . L 5 17.084 98.838 58.835 1 72.51 ? C1 OLC 1211 A 1 
HETATM 9 C C22 OLC . . . L 5 16.682 102.453 57.817 1 72.75 ? C22 OLC 1211 A 1 
HETATM 10 O O19 OLC . . . L 5 17.961 98.463 58.076 1 79.36 ? O19 OLC 1211 A 1 
HETATM 11 O O25 OLC . . . L 5 16.934 104.809 57.343 1 74.98 ? O25 OLC 1211 A 1 
HETATM 12 O O23 OLC . . . L 5 15.953 102.297 56.595 1 70.26 ? O23 OLC 1211 A 1 
HETATM 13 O O20 OLC . . . L 5 16.634 100.217 58.749 1 72.01 ? O20 OLC 1211 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#