data_5K2A
#
_model_server_result.job_id            SoBgH9Yug4MJcYbmQiIE9g 
_model_server_result.datetime_utc      '2024-11-22 19:12:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1225}' 
#
_entry.id    5K2A 
#
_exptl.entry_id    5K2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K2A 
_cell.length_a            40.35 
_cell.length_b            180.5 
_cell.length_c            142.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             Z 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc3 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc4 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc5 C NA NA . A NA 1202 1_555 BA O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 431 n n 
C1 C2 PEG sing 432 n n 
C1 H11 PEG sing 433 n n 
C1 H12 PEG sing 434 n n 
O1 HO1 PEG sing 435 n n 
C2 O2 PEG sing 436 n n 
C2 H21 PEG sing 437 n n 
C2 H22 PEG sing 438 n n 
O2 C3 PEG sing 439 n n 
C3 C4 PEG sing 440 n n 
C3 H31 PEG sing 441 n n 
C3 H32 PEG sing 442 n n 
C4 O4 PEG sing 443 n n 
C4 H41 PEG sing 444 n n 
C4 H42 PEG sing 445 n n 
O4 HO4 PEG sing 446 n n 
#
_atom_sites.entry_id                     5K2A 
_atom_sites.fract_transf_matrix[1][1]    0.024783 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 1201 1 ZMA ZMA . 
C 3 NA A 1 1202 2 NA NA . 
D 4 CLR A 1 1203 3 CLR CLR . 
E 4 CLR A 1 1204 4 CLR CLR . 
F 4 CLR A 1 1205 5 CLR CLR . 
G 5 OLC A 1 1206 11 OLC OLC . 
H 5 OLC A 1 1207 12 OLC OLC . 
I 5 OLC A 1 1208 13 OLC OLC . 
J 5 OLC A 1 1209 14 OLC OLC . 
K 5 OLC A 1 1210 15 OLC OLC . 
L 5 OLC A 1 1211 16 OLC OLC . 
M 5 OLC A 1 1212 17 OLC OLC . 
N 5 OLC A 1 1213 18 OLC OLC . 
O 5 OLC A 1 1214 19 OLC OLC . 
P 6 OLA A 1 1215 25 OLA OLA . 
Q 6 OLA A 1 1216 26 OLA OLA . 
R 6 OLA A 1 1217 27 OLA OLA . 
S 6 OLA A 1 1218 28 OLA OLA . 
T 6 OLA A 1 1219 30 OLA OLA . 
U 6 OLA A 1 1220 31 OLA OLA . 
V 6 OLA A 1 1221 33 OLA OLA . 
W 6 OLA A 1 1222 37 OLA OLA . 
X 6 OLA A 1 1223 38 OLA OLA . 
Y 6 OLA A 1 1224 41 OLA OLA . 
Z 7 PEG A 1 1225 49 PEG PEG . 
AA 5 OLC A 1 1226 1 OLC OLC . 
BA 8 HOH A 1 1301 76 HOH HOH . 
BA 8 HOH A 2 1302 69 HOH HOH . 
BA 8 HOH A 3 1303 47 HOH HOH . 
BA 8 HOH A 4 1304 1 HOH HOH . 
BA 8 HOH A 5 1305 4 HOH HOH . 
BA 8 HOH A 6 1306 62 HOH HOH . 
BA 8 HOH A 7 1307 27 HOH HOH . 
BA 8 HOH A 8 1308 3 HOH HOH . 
BA 8 HOH A 9 1309 7 HOH HOH . 
BA 8 HOH A 10 1310 15 HOH HOH . 
BA 8 HOH A 11 1311 80 HOH HOH . 
BA 8 HOH A 12 1312 93 HOH HOH . 
BA 8 HOH A 13 1313 56 HOH HOH . 
BA 8 HOH A 14 1314 87 HOH HOH . 
BA 8 HOH A 15 1315 6 HOH HOH . 
BA 8 HOH A 16 1316 24 HOH HOH . 
BA 8 HOH A 17 1317 71 HOH HOH . 
BA 8 HOH A 18 1318 10 HOH HOH . 
BA 8 HOH A 19 1319 44 HOH HOH . 
BA 8 HOH A 20 1320 20 HOH HOH . 
BA 8 HOH A 21 1321 51 HOH HOH . 
BA 8 HOH A 22 1322 8 HOH HOH . 
BA 8 HOH A 23 1323 2 HOH HOH . 
BA 8 HOH A 24 1324 5 HOH HOH . 
BA 8 HOH A 25 1325 60 HOH HOH . 
BA 8 HOH A 26 1326 68 HOH HOH . 
BA 8 HOH A 27 1327 37 HOH HOH . 
BA 8 HOH A 28 1328 12 HOH HOH . 
BA 8 HOH A 29 1329 38 HOH HOH . 
BA 8 HOH A 30 1330 33 HOH HOH . 
BA 8 HOH A 31 1331 67 HOH HOH . 
BA 8 HOH A 32 1332 42 HOH HOH . 
BA 8 HOH A 33 1333 34 HOH HOH . 
BA 8 HOH A 34 1334 14 HOH HOH . 
BA 8 HOH A 35 1335 53 HOH HOH . 
BA 8 HOH A 36 1336 13 HOH HOH . 
BA 8 HOH A 37 1337 43 HOH HOH . 
BA 8 HOH A 38 1338 23 HOH HOH . 
BA 8 HOH A 39 1339 19 HOH HOH . 
BA 8 HOH A 40 1340 11 HOH HOH . 
BA 8 HOH A 41 1341 18 HOH HOH . 
BA 8 HOH A 42 1342 77 HOH HOH . 
BA 8 HOH A 43 1343 36 HOH HOH . 
BA 8 HOH A 44 1344 25 HOH HOH . 
BA 8 HOH A 45 1345 94 HOH HOH . 
BA 8 HOH A 46 1346 30 HOH HOH . 
BA 8 HOH A 47 1347 35 HOH HOH . 
BA 8 HOH A 48 1348 41 HOH HOH . 
BA 8 HOH A 49 1349 61 HOH HOH . 
BA 8 HOH A 50 1350 64 HOH HOH . 
BA 8 HOH A 51 1351 65 HOH HOH . 
BA 8 HOH A 52 1352 29 HOH HOH . 
BA 8 HOH A 53 1353 16 HOH HOH . 
BA 8 HOH A 54 1354 9 HOH HOH . 
BA 8 HOH A 55 1355 46 HOH HOH . 
BA 8 HOH A 56 1356 72 HOH HOH . 
BA 8 HOH A 57 1357 73 HOH HOH . 
BA 8 HOH A 58 1358 21 HOH HOH . 
BA 8 HOH A 59 1359 31 HOH HOH . 
BA 8 HOH A 60 1360 81 HOH HOH . 
BA 8 HOH A 61 1361 78 HOH HOH . 
BA 8 HOH A 62 1362 40 HOH HOH . 
BA 8 HOH A 63 1363 57 HOH HOH . 
BA 8 HOH A 64 1364 26 HOH HOH . 
BA 8 HOH A 65 1365 59 HOH HOH . 
BA 8 HOH A 66 1366 55 HOH HOH . 
BA 8 HOH A 67 1367 83 HOH HOH . 
BA 8 HOH A 68 1368 58 HOH HOH . 
BA 8 HOH A 69 1369 92 HOH HOH . 
BA 8 HOH A 70 1370 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . Z 7 5.282 69.281 36.184 1 70.99 ? C1 PEG 1225 A 1 
HETATM 2 O O1 PEG . . . Z 7 5.414 69.9 34.899 1 85.85 ? O1 PEG 1225 A 1 
HETATM 3 C C2 PEG . . . Z 7 6.141 68.023 36.235 1 79.51 ? C2 PEG 1225 A 1 
HETATM 4 O O2 PEG . . . Z 7 7.493 68.358 35.931 1 75.72 ? O2 PEG 1225 A 1 
HETATM 5 C C3 PEG . . . Z 7 8.358 67.228 36.041 1 77.3 ? C3 PEG 1225 A 1 
HETATM 6 C C4 PEG . . . Z 7 9.764 67.627 35.61 1 80.34 ? C4 PEG 1225 A 1 
HETATM 7 O O4 PEG . . . Z 7 10.169 68.792 36.339 1 79.14 ? O4 PEG 1225 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#