data_5K2B # _model_server_result.job_id PW0HHY-3cMkM2cbulRywJA _model_server_result.datetime_utc '2024-11-22 23:18:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 5K2B # _exptl.entry_id 5K2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K2B _cell.length_a 40.36 _cell.length_b 180.74 _cell.length_c 142.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 Y O HOH . A HOH 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 Y O HOH . A HOH 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 Y O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K2B _atom_sites.fract_transf_matrix[1][1] 0.024777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1 ZMA ZMA . C 3 NA A 1 1202 1 NA NA . D 4 CLR A 1 1203 1 CLR CLR . E 4 CLR A 1 1204 2 CLR CLR . F 4 CLR A 1 1205 3 CLR CLR . G 5 OLB A 1 1206 4 OLB OLB . H 6 OLC A 1 1207 5 OLC OLC . I 6 OLC A 1 1208 13 OLC OLC . J 6 OLC A 1 1209 14 OLC OLC . K 6 OLC A 1 1210 15 OLC OLC . L 6 OLC A 1 1211 25 OLC OLC . M 6 OLC A 1 1212 26 OLC OLC . N 7 OLA A 1 1213 33 OLA OLA . O 7 OLA A 1 1214 45 OLA OLA . P 7 OLA A 1 1215 46 OLA OLA . Q 7 OLA A 1 1216 51 OLA OLA . R 7 OLA A 1 1217 58 OLA OLA . S 7 OLA A 1 1218 60 OLA OLA . T 7 OLA A 1 1219 70 OLA OLA . U 6 OLC A 1 1220 1 OLC OLC . V 6 OLC A 1 1221 2 OLC OLC . W 6 OLC A 1 1222 3 OLC OLC . X 7 OLA A 1 1223 33 OLA OLA . Y 8 HOH A 1 1301 64 HOH HOH . Y 8 HOH A 2 1302 45 HOH HOH . Y 8 HOH A 3 1303 20 HOH HOH . Y 8 HOH A 4 1304 33 HOH HOH . Y 8 HOH A 5 1305 17 HOH HOH . Y 8 HOH A 6 1306 38 HOH HOH . Y 8 HOH A 7 1307 19 HOH HOH . Y 8 HOH A 8 1308 58 HOH HOH . Y 8 HOH A 9 1309 32 HOH HOH . Y 8 HOH A 10 1310 29 HOH HOH . Y 8 HOH A 11 1311 61 HOH HOH . Y 8 HOH A 12 1312 12 HOH HOH . Y 8 HOH A 13 1313 4 HOH HOH . Y 8 HOH A 14 1314 2 HOH HOH . Y 8 HOH A 15 1315 16 HOH HOH . Y 8 HOH A 16 1316 18 HOH HOH . Y 8 HOH A 17 1317 8 HOH HOH . Y 8 HOH A 18 1318 28 HOH HOH . Y 8 HOH A 19 1319 22 HOH HOH . Y 8 HOH A 20 1320 59 HOH HOH . Y 8 HOH A 21 1321 3 HOH HOH . Y 8 HOH A 22 1322 69 HOH HOH . Y 8 HOH A 23 1323 34 HOH HOH . Y 8 HOH A 24 1324 23 HOH HOH . Y 8 HOH A 25 1325 36 HOH HOH . Y 8 HOH A 26 1326 25 HOH HOH . Y 8 HOH A 27 1327 9 HOH HOH . Y 8 HOH A 28 1328 13 HOH HOH . Y 8 HOH A 29 1329 54 HOH HOH . Y 8 HOH A 30 1330 10 HOH HOH . Y 8 HOH A 31 1331 39 HOH HOH . Y 8 HOH A 32 1332 6 HOH HOH . Y 8 HOH A 33 1333 35 HOH HOH . Y 8 HOH A 34 1334 40 HOH HOH . Y 8 HOH A 35 1335 42 HOH HOH . Y 8 HOH A 36 1336 1 HOH HOH . Y 8 HOH A 37 1337 24 HOH HOH . Y 8 HOH A 38 1338 11 HOH HOH . Y 8 HOH A 39 1339 65 HOH HOH . Y 8 HOH A 40 1340 37 HOH HOH . Y 8 HOH A 41 1341 30 HOH HOH . Y 8 HOH A 42 1342 21 HOH HOH . Y 8 HOH A 43 1343 14 HOH HOH . Y 8 HOH A 44 1344 26 HOH HOH . Y 8 HOH A 45 1345 7 HOH HOH . Y 8 HOH A 46 1346 43 HOH HOH . Y 8 HOH A 47 1347 51 HOH HOH . Y 8 HOH A 48 1348 49 HOH HOH . Y 8 HOH A 49 1349 67 HOH HOH . Y 8 HOH A 50 1350 63 HOH HOH . Y 8 HOH A 51 1351 57 HOH HOH . Y 8 HOH A 52 1352 5 HOH HOH . Y 8 HOH A 53 1353 46 HOH HOH . Y 8 HOH A 54 1354 74 HOH HOH . Y 8 HOH A 55 1355 15 HOH HOH . Y 8 HOH A 56 1356 27 HOH HOH . Y 8 HOH A 57 1357 41 HOH HOH . Y 8 HOH A 58 1358 75 HOH HOH . Y 8 HOH A 59 1359 71 HOH HOH . Y 8 HOH A 60 1360 44 HOH HOH . Y 8 HOH A 61 1361 31 HOH HOH . Y 8 HOH A 62 1362 72 HOH HOH . Y 8 HOH A 63 1363 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.944 _atom_site.Cartn_y 189.371 _atom_site.Cartn_z 16.735 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #