data_5K2B # _model_server_result.job_id 0-74Wx7FDBSdH8XQM0-X_Q _model_server_result.datetime_utc '2024-10-18 05:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5K2B # _exptl.entry_id 5K2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K2B _cell.length_a 40.36 _cell.length_b 180.74 _cell.length_c 142.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 Y O HOH . A HOH 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 Y O HOH . A HOH 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 Y O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 5K2B _atom_sites.fract_transf_matrix[1][1] 0.024777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1 ZMA ZMA . C 3 NA A 1 1202 1 NA NA . D 4 CLR A 1 1203 1 CLR CLR . E 4 CLR A 1 1204 2 CLR CLR . F 4 CLR A 1 1205 3 CLR CLR . G 5 OLB A 1 1206 4 OLB OLB . H 6 OLC A 1 1207 5 OLC OLC . I 6 OLC A 1 1208 13 OLC OLC . J 6 OLC A 1 1209 14 OLC OLC . K 6 OLC A 1 1210 15 OLC OLC . L 6 OLC A 1 1211 25 OLC OLC . M 6 OLC A 1 1212 26 OLC OLC . N 7 OLA A 1 1213 33 OLA OLA . O 7 OLA A 1 1214 45 OLA OLA . P 7 OLA A 1 1215 46 OLA OLA . Q 7 OLA A 1 1216 51 OLA OLA . R 7 OLA A 1 1217 58 OLA OLA . S 7 OLA A 1 1218 60 OLA OLA . T 7 OLA A 1 1219 70 OLA OLA . U 6 OLC A 1 1220 1 OLC OLC . V 6 OLC A 1 1221 2 OLC OLC . W 6 OLC A 1 1222 3 OLC OLC . X 7 OLA A 1 1223 33 OLA OLA . Y 8 HOH A 1 1301 64 HOH HOH . Y 8 HOH A 2 1302 45 HOH HOH . Y 8 HOH A 3 1303 20 HOH HOH . Y 8 HOH A 4 1304 33 HOH HOH . Y 8 HOH A 5 1305 17 HOH HOH . Y 8 HOH A 6 1306 38 HOH HOH . Y 8 HOH A 7 1307 19 HOH HOH . Y 8 HOH A 8 1308 58 HOH HOH . Y 8 HOH A 9 1309 32 HOH HOH . Y 8 HOH A 10 1310 29 HOH HOH . Y 8 HOH A 11 1311 61 HOH HOH . Y 8 HOH A 12 1312 12 HOH HOH . Y 8 HOH A 13 1313 4 HOH HOH . Y 8 HOH A 14 1314 2 HOH HOH . Y 8 HOH A 15 1315 16 HOH HOH . Y 8 HOH A 16 1316 18 HOH HOH . Y 8 HOH A 17 1317 8 HOH HOH . Y 8 HOH A 18 1318 28 HOH HOH . Y 8 HOH A 19 1319 22 HOH HOH . Y 8 HOH A 20 1320 59 HOH HOH . Y 8 HOH A 21 1321 3 HOH HOH . Y 8 HOH A 22 1322 69 HOH HOH . Y 8 HOH A 23 1323 34 HOH HOH . Y 8 HOH A 24 1324 23 HOH HOH . Y 8 HOH A 25 1325 36 HOH HOH . Y 8 HOH A 26 1326 25 HOH HOH . Y 8 HOH A 27 1327 9 HOH HOH . Y 8 HOH A 28 1328 13 HOH HOH . Y 8 HOH A 29 1329 54 HOH HOH . Y 8 HOH A 30 1330 10 HOH HOH . Y 8 HOH A 31 1331 39 HOH HOH . Y 8 HOH A 32 1332 6 HOH HOH . Y 8 HOH A 33 1333 35 HOH HOH . Y 8 HOH A 34 1334 40 HOH HOH . Y 8 HOH A 35 1335 42 HOH HOH . Y 8 HOH A 36 1336 1 HOH HOH . Y 8 HOH A 37 1337 24 HOH HOH . Y 8 HOH A 38 1338 11 HOH HOH . Y 8 HOH A 39 1339 65 HOH HOH . Y 8 HOH A 40 1340 37 HOH HOH . Y 8 HOH A 41 1341 30 HOH HOH . Y 8 HOH A 42 1342 21 HOH HOH . Y 8 HOH A 43 1343 14 HOH HOH . Y 8 HOH A 44 1344 26 HOH HOH . Y 8 HOH A 45 1345 7 HOH HOH . Y 8 HOH A 46 1346 43 HOH HOH . Y 8 HOH A 47 1347 51 HOH HOH . Y 8 HOH A 48 1348 49 HOH HOH . Y 8 HOH A 49 1349 67 HOH HOH . Y 8 HOH A 50 1350 63 HOH HOH . Y 8 HOH A 51 1351 57 HOH HOH . Y 8 HOH A 52 1352 5 HOH HOH . Y 8 HOH A 53 1353 46 HOH HOH . Y 8 HOH A 54 1354 74 HOH HOH . Y 8 HOH A 55 1355 15 HOH HOH . Y 8 HOH A 56 1356 27 HOH HOH . Y 8 HOH A 57 1357 41 HOH HOH . Y 8 HOH A 58 1358 75 HOH HOH . Y 8 HOH A 59 1359 71 HOH HOH . Y 8 HOH A 60 1360 44 HOH HOH . Y 8 HOH A 61 1361 31 HOH HOH . Y 8 HOH A 62 1362 72 HOH HOH . Y 8 HOH A 63 1363 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 4 3.15 172.288 21.914 1 38.65 ? C1 CLR 1203 A 1 HETATM 2 C C2 CLR . . . D 4 3.029 170.77 21.866 1 43.13 ? C2 CLR 1203 A 1 HETATM 3 C C3 CLR . . . D 4 1.931 170.357 20.896 1 43.36 ? C3 CLR 1203 A 1 HETATM 4 C C4 CLR . . . D 4 2.32 170.808 19.495 1 39.36 ? C4 CLR 1203 A 1 HETATM 5 C C5 CLR . . . D 4 2.577 172.295 19.504 1 46.95 ? C5 CLR 1203 A 1 HETATM 6 C C6 CLR . . . D 4 1.971 173.06 18.578 1 39.02 ? C6 CLR 1203 A 1 HETATM 7 C C7 CLR . . . D 4 2.3 174.515 18.325 1 44.64 ? C7 CLR 1203 A 1 HETATM 8 C C8 CLR . . . D 4 3.415 175.017 19.229 1 44.65 ? C8 CLR 1203 A 1 HETATM 9 C C9 CLR . . . D 4 3.334 174.38 20.611 1 39.57 ? C9 CLR 1203 A 1 HETATM 10 C C10 CLR . . . D 4 3.5 172.87 20.549 1 41.54 ? C10 CLR 1203 A 1 HETATM 11 C C11 CLR . . . D 4 4.351 174.985 21.578 1 46.44 ? C11 CLR 1203 A 1 HETATM 12 C C12 CLR . . . D 4 4.259 176.508 21.654 1 44.15 ? C12 CLR 1203 A 1 HETATM 13 C C13 CLR . . . D 4 4.402 177.108 20.264 1 55.66 ? C13 CLR 1203 A 1 HETATM 14 C C14 CLR . . . D 4 3.308 176.526 19.396 1 49.77 ? C14 CLR 1203 A 1 HETATM 15 C C15 CLR . . . D 4 3.312 177.378 18.136 1 53.63 ? C15 CLR 1203 A 1 HETATM 16 C C16 CLR . . . D 4 3.693 178.766 18.652 1 50.49 ? C16 CLR 1203 A 1 HETATM 17 C C17 CLR . . . D 4 4.124 178.6 20.113 1 52.45 ? C17 CLR 1203 A 1 HETATM 18 C C18 CLR . . . D 4 5.774 176.785 19.679 1 37.99 ? C18 CLR 1203 A 1 HETATM 19 C C19 CLR . . . D 4 4.936 172.513 20.183 1 40.65 ? C19 CLR 1203 A 1 HETATM 20 C C20 CLR . . . D 4 5.281 179.537 20.468 1 58.27 ? C20 CLR 1203 A 1 HETATM 21 C C21 CLR . . . D 4 5.519 179.654 21.971 1 55.47 ? C21 CLR 1203 A 1 HETATM 22 C C22 CLR . . . D 4 5.049 180.922 19.87 1 60.9 ? C22 CLR 1203 A 1 HETATM 23 C C23 CLR . . . D 4 5.964 181.974 20.491 1 63.12 ? C23 CLR 1203 A 1 HETATM 24 C C24 CLR . . . D 4 6.267 183.077 19.481 1 56.14 ? C24 CLR 1203 A 1 HETATM 25 C C25 CLR . . . D 4 5.837 184.463 19.956 1 63.01 ? C25 CLR 1203 A 1 HETATM 26 C C26 CLR . . . D 4 5.562 185.369 18.762 1 50.77 ? C26 CLR 1203 A 1 HETATM 27 C C27 CLR . . . D 4 4.635 184.416 20.893 1 66.93 ? C27 CLR 1203 A 1 HETATM 28 O O1 CLR . . . D 4 1.781 168.933 20.908 1 49.61 ? O1 CLR 1203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #