data_5K2D # _model_server_result.job_id D9un1INgx4N4umYnnZUxXA _model_server_result.datetime_utc '2024-12-03 17:18:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1225}' # _entry.id 5K2D # _exptl.entry_id 5K2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K2D _cell.length_a 40.36 _cell.length_b 180.74 _cell.length_c 142.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 CA O HOH . A HOH 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 CA O HOH . A HOH 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 CA O HOH . A HOH 1375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 495 n n C1 C2 PEG sing 496 n n C1 H11 PEG sing 497 n n C1 H12 PEG sing 498 n n O1 HO1 PEG sing 499 n n C2 O2 PEG sing 500 n n C2 H21 PEG sing 501 n n C2 H22 PEG sing 502 n n O2 C3 PEG sing 503 n n C3 C4 PEG sing 504 n n C3 H31 PEG sing 505 n n C3 H32 PEG sing 506 n n C4 O4 PEG sing 507 n n C4 H41 PEG sing 508 n n C4 H42 PEG sing 509 n n O4 HO4 PEG sing 510 n n # _atom_sites.entry_id 5K2D _atom_sites.fract_transf_matrix[1][1] 0.024777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1201 ZMA ZMA . C 3 NA A 1 1202 1202 NA NA . D 4 CLR A 1 1203 1203 CLR CLR . E 4 CLR A 1 1204 1204 CLR CLR . F 4 CLR A 1 1205 1205 CLR CLR . G 5 OLB A 1 1206 1206 OLB OLB . H 6 OLC A 1 1207 1207 OLC OLC . I 6 OLC A 1 1208 1208 OLC OLC . J 6 OLC A 1 1209 1209 OLC OLC . K 5 OLB A 1 1210 1210 OLB OLB . L 6 OLC A 1 1211 1211 OLC OLC . M 6 OLC A 1 1212 1212 OLC OLC . N 7 OLA A 1 1213 1213 OLA OLA . O 7 OLA A 1 1214 1214 OLA OLA . P 7 OLA A 1 1215 1215 OLA OLA . Q 7 OLA A 1 1216 1216 OLA OLA . R 7 OLA A 1 1217 1217 OLA OLA . S 7 OLA A 1 1218 1218 OLA OLA . T 7 OLA A 1 1219 1219 OLA OLA . U 6 OLC A 1 1220 1220 OLC OLC . V 6 OLC A 1 1221 1221 OLC OLC . W 6 OLC A 1 1222 1222 OLC OLC . X 7 OLA A 1 1223 1223 OLA OLA . Y 7 OLA A 1 1224 1224 OLA OLA . Z 8 PEG A 1 1225 1225 PEG PEG . AA 7 OLA A 1 1226 1226 OLA OLA . BA 7 OLA A 1 1227 1227 OLA OLA . CA 9 HOH A 1 1301 1301 HOH HOH . CA 9 HOH A 2 1302 1302 HOH HOH . CA 9 HOH A 3 1303 1303 HOH HOH . CA 9 HOH A 4 1304 1304 HOH HOH . CA 9 HOH A 5 1305 1305 HOH HOH . CA 9 HOH A 6 1306 1306 HOH HOH . CA 9 HOH A 7 1307 1307 HOH HOH . CA 9 HOH A 8 1308 1308 HOH HOH . CA 9 HOH A 9 1309 1309 HOH HOH . CA 9 HOH A 10 1310 1310 HOH HOH . CA 9 HOH A 11 1311 1311 HOH HOH . CA 9 HOH A 12 1312 1312 HOH HOH . CA 9 HOH A 13 1313 1313 HOH HOH . CA 9 HOH A 14 1314 1314 HOH HOH . CA 9 HOH A 15 1315 1315 HOH HOH . CA 9 HOH A 16 1316 1316 HOH HOH . CA 9 HOH A 17 1317 1317 HOH HOH . CA 9 HOH A 18 1318 1318 HOH HOH . CA 9 HOH A 19 1319 1319 HOH HOH . CA 9 HOH A 20 1320 1320 HOH HOH . CA 9 HOH A 21 1321 1321 HOH HOH . CA 9 HOH A 22 1322 1322 HOH HOH . CA 9 HOH A 23 1323 1323 HOH HOH . CA 9 HOH A 24 1324 1324 HOH HOH . CA 9 HOH A 25 1325 1325 HOH HOH . CA 9 HOH A 26 1326 1326 HOH HOH . CA 9 HOH A 27 1327 1327 HOH HOH . CA 9 HOH A 28 1328 1328 HOH HOH . CA 9 HOH A 29 1329 1329 HOH HOH . CA 9 HOH A 30 1330 1330 HOH HOH . CA 9 HOH A 31 1331 1331 HOH HOH . CA 9 HOH A 32 1332 1332 HOH HOH . CA 9 HOH A 33 1333 1333 HOH HOH . CA 9 HOH A 34 1334 1334 HOH HOH . CA 9 HOH A 35 1335 1335 HOH HOH . CA 9 HOH A 36 1336 1336 HOH HOH . CA 9 HOH A 37 1337 1337 HOH HOH . CA 9 HOH A 38 1338 1338 HOH HOH . CA 9 HOH A 39 1339 1339 HOH HOH . CA 9 HOH A 40 1340 1340 HOH HOH . CA 9 HOH A 41 1341 1341 HOH HOH . CA 9 HOH A 42 1342 1342 HOH HOH . CA 9 HOH A 43 1343 1343 HOH HOH . CA 9 HOH A 44 1344 1344 HOH HOH . CA 9 HOH A 45 1345 1345 HOH HOH . CA 9 HOH A 46 1346 1346 HOH HOH . CA 9 HOH A 47 1347 1347 HOH HOH . CA 9 HOH A 48 1348 1348 HOH HOH . CA 9 HOH A 49 1349 1349 HOH HOH . CA 9 HOH A 50 1350 1350 HOH HOH . CA 9 HOH A 51 1351 1351 HOH HOH . CA 9 HOH A 52 1352 1352 HOH HOH . CA 9 HOH A 53 1353 1353 HOH HOH . CA 9 HOH A 54 1354 1354 HOH HOH . CA 9 HOH A 55 1355 1355 HOH HOH . CA 9 HOH A 56 1356 1356 HOH HOH . CA 9 HOH A 57 1357 1357 HOH HOH . CA 9 HOH A 58 1358 1358 HOH HOH . CA 9 HOH A 59 1359 1359 HOH HOH . CA 9 HOH A 60 1360 1360 HOH HOH . CA 9 HOH A 61 1361 1361 HOH HOH . CA 9 HOH A 62 1362 1362 HOH HOH . CA 9 HOH A 63 1363 1363 HOH HOH . CA 9 HOH A 64 1364 1364 HOH HOH . CA 9 HOH A 65 1365 1365 HOH HOH . CA 9 HOH A 66 1366 1366 HOH HOH . CA 9 HOH A 67 1367 1367 HOH HOH . CA 9 HOH A 68 1368 1368 HOH HOH . CA 9 HOH A 69 1369 1369 HOH HOH . CA 9 HOH A 70 1370 1370 HOH HOH . CA 9 HOH A 71 1371 1371 HOH HOH . CA 9 HOH A 72 1372 1372 HOH HOH . CA 9 HOH A 73 1373 1373 HOH HOH . CA 9 HOH A 74 1374 1374 HOH HOH . CA 9 HOH A 75 1375 1375 HOH HOH . CA 9 HOH A 76 1376 1376 HOH HOH . CA 9 HOH A 77 1377 1377 HOH HOH . CA 9 HOH A 78 1378 1378 HOH HOH . CA 9 HOH A 79 1379 1379 HOH HOH . CA 9 HOH A 80 1380 1380 HOH HOH . CA 9 HOH A 81 1381 1381 HOH HOH . CA 9 HOH A 82 1382 1382 HOH HOH . CA 9 HOH A 83 1383 1383 HOH HOH . CA 9 HOH A 84 1384 1384 HOH HOH . CA 9 HOH A 85 1385 1385 HOH HOH . CA 9 HOH A 86 1386 1386 HOH HOH . CA 9 HOH A 87 1387 1387 HOH HOH . CA 9 HOH A 88 1388 1388 HOH HOH . CA 9 HOH A 89 1389 1389 HOH HOH . CA 9 HOH A 90 1390 1390 HOH HOH . CA 9 HOH A 91 1391 1391 HOH HOH . CA 9 HOH A 92 1392 1392 HOH HOH . CA 9 HOH A 93 1393 1393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . Z 8 30.311 203.164 34.888 1 98.4 ? C1 PEG 1225 A 1 HETATM 2 O O1 PEG . . . Z 8 30.584 203.965 36.041 1 98.91 ? O1 PEG 1225 A 1 HETATM 3 C C2 PEG . . . Z 8 28.814 203.201 34.614 1 97.86 ? C2 PEG 1225 A 1 HETATM 4 O O2 PEG . . . Z 8 28.148 202.338 35.529 1 96.52 ? O2 PEG 1225 A 1 HETATM 5 C C3 PEG . . . Z 8 26.756 202.23 35.234 1 95.91 ? C3 PEG 1225 A 1 HETATM 6 C C4 PEG . . . Z 8 26.163 201.121 36.094 1 96.9 ? C4 PEG 1225 A 1 HETATM 7 O O4 PEG . . . Z 8 24.767 200.981 35.811 1 98.33 ? O4 PEG 1225 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 57 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 492 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #