data_5K2F # _model_server_result.job_id 7ZpvkVy-zxxrceSSmD4wOA _model_server_result.datetime_utc '2024-11-14 06:27:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5K2F # _exptl.entry_id 5K2F _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.29 _cell.angle_gamma 90 _cell.entry_id 5K2F _cell.length_a 22.074 _cell.length_b 4.932 _cell.length_c 23.51 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 A,B,C,D 1 5 A,B,C,D 1 6 A,B,C,D 1 7 A,B,C,D 1 8 A,B,C,D 1 9 A,B,C,D 1 10 A,B,C,D 1 11 A,B,C,D 1 12 A,B,C,D 1 13 A,B,C,D 1 14 A,B,C,D 1 15 A,B,C,D 1 16 A,B,C,D 1 17 A,B,C,D 1 18 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_515 x,y-4,z 1 0 0 0 1 0 0 0 1 0 -19.728 0 3 'crystal symmetry operation' 1_525 x,y-3,z 1 0 0 0 1 0 0 0 1 0 -14.796 0 4 'crystal symmetry operation' 1_535 x,y-2,z 1 0 0 0 1 0 0 0 1 0 -9.864 0 5 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 0 -4.932 0 6 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 4.932 0 7 'crystal symmetry operation' 1_575 x,y+2,z 1 0 0 0 1 0 0 0 1 0 9.864 0 8 'crystal symmetry operation' 1_585 x,y+3,z 1 0 0 0 1 0 0 0 1 0 14.796 0 9 'crystal symmetry operation' 1_595 x,y+4,z 1 0 0 0 1 0 0 0 1 0 19.728 0 10 'crystal symmetry operation' 2_515 -x,y-7/2,-z -1 0 0 0 1 0 0 0 -1 0 -17.262 0 11 'crystal symmetry operation' 2_525 -x,y-5/2,-z -1 0 0 0 1 0 0 0 -1 0 -12.33 0 12 'crystal symmetry operation' 2_535 -x,y-3/2,-z -1 0 0 0 1 0 0 0 -1 0 -7.398 0 13 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -2.466 0 14 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1 0 0 0 1 0 0 0 -1 0 2.466 0 15 'crystal symmetry operation' 2_565 -x,y+3/2,-z -1 0 0 0 1 0 0 0 -1 0 7.398 0 16 'crystal symmetry operation' 2_575 -x,y+5/2,-z -1 0 0 0 1 0 0 0 -1 0 12.33 0 17 'crystal symmetry operation' 2_585 -x,y+7/2,-z -1 0 0 0 1 0 0 0 -1 0 17.262 0 18 'crystal symmetry operation' 2_595 -x,y+9/2,-z -1 0 0 0 1 0 0 0 -1 0 22.194 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N ASN 1 A ASN 1 1_555 B CD CD . A CD 101 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 A O TYR 6 A TYR 6 1_555 B CD CD . A CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A OXT TYR 6 A TYR 6 1_555 B CD CD . A CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc4 B CD CD . A CD 101 1_555 C OXT ACT . A ACT 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B CD CD . A CD 101 1_555 C O ACT . A ACT 102 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc6 B CD CD . A CD 101 1_555 D O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K2F _atom_sites.fract_transf_matrix[1][1] 0.045302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.202757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.043893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 101 7 CD CD . C 3 ACT A 1 102 1 ACT ACT . D 4 HOH A 1 201 4 HOH HOH . D 4 HOH A 2 202 2 HOH HOH . D 4 HOH A 3 203 6 HOH HOH . D 4 HOH A 4 204 1 HOH HOH . D 4 HOH A 5 205 3 HOH HOH . D 4 HOH A 6 206 7 HOH HOH . D 4 HOH A 7 207 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.783 _atom_site.Cartn_y 3.3 _atom_site.Cartn_z 5.643 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #