data_5K30 # _model_server_result.job_id GNXXHmcKACc_T3yCdxkRhw _model_server_result.datetime_utc '2024-11-22 19:52:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5K30 # _exptl.entry_id 5K30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K30 _cell.length_a 56.352 _cell.length_b 122.787 _cell.length_c 128.351 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 3 A ASP 3 1_555 A N SCS 4 A SCS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C SCS 4 A SCS 4 1_555 A N ARG 5 A ARG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A OH TYR 113 A TYR 113 1_555 A CE SCS 115 A SCS 115 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale4 A C GLY 114 A GLY 114 1_555 A N SCS 115 A SCS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C SCS 115 A SCS 115 1_555 A N THR 116 A THR 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A NZ LYS 210 A LYS 210 1_555 B C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale7 A C GLY 244 A GLY 244 1_555 A N SCS 245 A SCS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C SCS 245 A SCS 245 1_555 A N MET 246 A MET 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 456 n n C C2 TRS sing 457 n n C C3 TRS sing 458 n n C N TRS sing 459 n n C1 O1 TRS sing 460 n n C1 H11 TRS sing 461 n n C1 H12 TRS sing 462 n n C2 O2 TRS sing 463 n n C2 H21 TRS sing 464 n n C2 H22 TRS sing 465 n n C3 O3 TRS sing 466 n n C3 H31 TRS sing 467 n n C3 H32 TRS sing 468 n n N HN1 TRS sing 469 n n N HN2 TRS sing 470 n n N HN3 TRS sing 471 n n O1 HO1 TRS sing 472 n n O2 HO2 TRS sing 473 n n O3 HO3 TRS sing 474 n n # _atom_sites.entry_id 5K30 _atom_sites.fract_transf_matrix[1][1] 0.017746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 401 1210 PLP PLP . C 3 1PE A 1 402 400 1PE 1PE . D 4 PEG A 1 403 401 PEG PEG . E 5 PGE A 1 404 402 PGE PGE . F 5 PGE A 1 405 403 PGE PGE . G 6 TRS A 1 406 404 TRS TRS . H 7 HOH A 1 501 106 HOH HOH . H 7 HOH A 2 502 190 HOH HOH . H 7 HOH A 3 503 153 HOH HOH . H 7 HOH A 4 504 101 HOH HOH . H 7 HOH A 5 505 219 HOH HOH . H 7 HOH A 6 506 134 HOH HOH . H 7 HOH A 7 507 185 HOH HOH . H 7 HOH A 8 508 26 HOH HOH . H 7 HOH A 9 509 47 HOH HOH . H 7 HOH A 10 510 50 HOH HOH . H 7 HOH A 11 511 152 HOH HOH . H 7 HOH A 12 512 200 HOH HOH . H 7 HOH A 13 513 86 HOH HOH . H 7 HOH A 14 514 193 HOH HOH . H 7 HOH A 15 515 75 HOH HOH . H 7 HOH A 16 516 204 HOH HOH . H 7 HOH A 17 517 109 HOH HOH . H 7 HOH A 18 518 124 HOH HOH . H 7 HOH A 19 519 17 HOH HOH . H 7 HOH A 20 520 137 HOH HOH . H 7 HOH A 21 521 74 HOH HOH . H 7 HOH A 22 522 120 HOH HOH . H 7 HOH A 23 523 148 HOH HOH . H 7 HOH A 24 524 90 HOH HOH . H 7 HOH A 25 525 213 HOH HOH . H 7 HOH A 26 526 10 HOH HOH . H 7 HOH A 27 527 14 HOH HOH . H 7 HOH A 28 528 24 HOH HOH . H 7 HOH A 29 529 103 HOH HOH . H 7 HOH A 30 530 89 HOH HOH . H 7 HOH A 31 531 100 HOH HOH . H 7 HOH A 32 532 145 HOH HOH . H 7 HOH A 33 533 83 HOH HOH . H 7 HOH A 34 534 116 HOH HOH . H 7 HOH A 35 535 25 HOH HOH . H 7 HOH A 36 536 107 HOH HOH . H 7 HOH A 37 537 197 HOH HOH . H 7 HOH A 38 538 73 HOH HOH . H 7 HOH A 39 539 202 HOH HOH . H 7 HOH A 40 540 22 HOH HOH . H 7 HOH A 41 541 58 HOH HOH . H 7 HOH A 42 542 140 HOH HOH . H 7 HOH A 43 543 12 HOH HOH . H 7 HOH A 44 544 87 HOH HOH . H 7 HOH A 45 545 15 HOH HOH . H 7 HOH A 46 546 57 HOH HOH . H 7 HOH A 47 547 37 HOH HOH . H 7 HOH A 48 548 233 HOH HOH . H 7 HOH A 49 549 144 HOH HOH . H 7 HOH A 50 550 98 HOH HOH . H 7 HOH A 51 551 11 HOH HOH . H 7 HOH A 52 552 13 HOH HOH . H 7 HOH A 53 553 28 HOH HOH . H 7 HOH A 54 554 70 HOH HOH . H 7 HOH A 55 555 214 HOH HOH . H 7 HOH A 56 556 115 HOH HOH . H 7 HOH A 57 557 119 HOH HOH . H 7 HOH A 58 558 31 HOH HOH . H 7 HOH A 59 559 56 HOH HOH . H 7 HOH A 60 560 121 HOH HOH . H 7 HOH A 61 561 78 HOH HOH . H 7 HOH A 62 562 129 HOH HOH . H 7 HOH A 63 563 176 HOH HOH . H 7 HOH A 64 564 61 HOH HOH . H 7 HOH A 65 565 84 HOH HOH . H 7 HOH A 66 566 127 HOH HOH . H 7 HOH A 67 567 16 HOH HOH . H 7 HOH A 68 568 143 HOH HOH . H 7 HOH A 69 569 123 HOH HOH . H 7 HOH A 70 570 88 HOH HOH . H 7 HOH A 71 571 114 HOH HOH . H 7 HOH A 72 572 55 HOH HOH . H 7 HOH A 73 573 92 HOH HOH . H 7 HOH A 74 574 53 HOH HOH . H 7 HOH A 75 575 35 HOH HOH . H 7 HOH A 76 576 23 HOH HOH . H 7 HOH A 77 577 7 HOH HOH . H 7 HOH A 78 578 173 HOH HOH . H 7 HOH A 79 579 179 HOH HOH . H 7 HOH A 80 580 95 HOH HOH . H 7 HOH A 81 581 160 HOH HOH . H 7 HOH A 82 582 159 HOH HOH . H 7 HOH A 83 583 36 HOH HOH . H 7 HOH A 84 584 19 HOH HOH . H 7 HOH A 85 585 27 HOH HOH . H 7 HOH A 86 586 46 HOH HOH . H 7 HOH A 87 587 79 HOH HOH . H 7 HOH A 88 588 196 HOH HOH . H 7 HOH A 89 589 8 HOH HOH . H 7 HOH A 90 590 32 HOH HOH . H 7 HOH A 91 591 195 HOH HOH . H 7 HOH A 92 592 93 HOH HOH . H 7 HOH A 93 593 151 HOH HOH . H 7 HOH A 94 594 43 HOH HOH . H 7 HOH A 95 595 39 HOH HOH . H 7 HOH A 96 596 138 HOH HOH . H 7 HOH A 97 597 139 HOH HOH . H 7 HOH A 98 598 226 HOH HOH . H 7 HOH A 99 599 80 HOH HOH . H 7 HOH A 100 600 155 HOH HOH . H 7 HOH A 101 601 133 HOH HOH . H 7 HOH A 102 602 42 HOH HOH . H 7 HOH A 103 603 141 HOH HOH . H 7 HOH A 104 604 77 HOH HOH . H 7 HOH A 105 605 126 HOH HOH . H 7 HOH A 106 606 166 HOH HOH . H 7 HOH A 107 607 125 HOH HOH . H 7 HOH A 108 608 6 HOH HOH . H 7 HOH A 109 609 122 HOH HOH . H 7 HOH A 110 610 30 HOH HOH . H 7 HOH A 111 611 59 HOH HOH . H 7 HOH A 112 612 150 HOH HOH . H 7 HOH A 113 613 178 HOH HOH . H 7 HOH A 114 614 69 HOH HOH . H 7 HOH A 115 615 76 HOH HOH . H 7 HOH A 116 616 117 HOH HOH . H 7 HOH A 117 617 222 HOH HOH . H 7 HOH A 118 618 180 HOH HOH . H 7 HOH A 119 619 38 HOH HOH . H 7 HOH A 120 620 216 HOH HOH . H 7 HOH A 121 621 51 HOH HOH . H 7 HOH A 122 622 191 HOH HOH . H 7 HOH A 123 623 34 HOH HOH . H 7 HOH A 124 624 110 HOH HOH . H 7 HOH A 125 625 146 HOH HOH . H 7 HOH A 126 626 97 HOH HOH . H 7 HOH A 127 627 33 HOH HOH . H 7 HOH A 128 628 72 HOH HOH . H 7 HOH A 129 629 154 HOH HOH . H 7 HOH A 130 630 29 HOH HOH . H 7 HOH A 131 631 182 HOH HOH . H 7 HOH A 132 632 99 HOH HOH . H 7 HOH A 133 633 5 HOH HOH . H 7 HOH A 134 634 60 HOH HOH . H 7 HOH A 135 635 206 HOH HOH . H 7 HOH A 136 636 198 HOH HOH . H 7 HOH A 137 637 186 HOH HOH . H 7 HOH A 138 638 218 HOH HOH . H 7 HOH A 139 639 147 HOH HOH . H 7 HOH A 140 640 71 HOH HOH . H 7 HOH A 141 641 91 HOH HOH . H 7 HOH A 142 642 135 HOH HOH . H 7 HOH A 143 643 229 HOH HOH . H 7 HOH A 144 644 118 HOH HOH . H 7 HOH A 145 645 81 HOH HOH . H 7 HOH A 146 646 52 HOH HOH . H 7 HOH A 147 647 162 HOH HOH . H 7 HOH A 148 648 113 HOH HOH . H 7 HOH A 149 649 3 HOH HOH . H 7 HOH A 150 650 62 HOH HOH . H 7 HOH A 151 651 21 HOH HOH . H 7 HOH A 152 652 2 HOH HOH . H 7 HOH A 153 653 208 HOH HOH . H 7 HOH A 154 654 68 HOH HOH . H 7 HOH A 155 655 187 HOH HOH . H 7 HOH A 156 656 94 HOH HOH . H 7 HOH A 157 657 181 HOH HOH . H 7 HOH A 158 658 189 HOH HOH . H 7 HOH A 159 659 184 HOH HOH . H 7 HOH A 160 660 209 HOH HOH . H 7 HOH A 161 661 85 HOH HOH . H 7 HOH A 162 662 40 HOH HOH . H 7 HOH A 163 663 130 HOH HOH . H 7 HOH A 164 664 205 HOH HOH . H 7 HOH A 165 665 211 HOH HOH . H 7 HOH A 166 666 112 HOH HOH . H 7 HOH A 167 667 63 HOH HOH . H 7 HOH A 168 668 104 HOH HOH . H 7 HOH A 169 669 170 HOH HOH . H 7 HOH A 170 670 105 HOH HOH . H 7 HOH A 171 671 203 HOH HOH . H 7 HOH A 172 672 20 HOH HOH . H 7 HOH A 173 673 165 HOH HOH . H 7 HOH A 174 674 1 HOH HOH . H 7 HOH A 175 675 158 HOH HOH . H 7 HOH A 176 676 96 HOH HOH . H 7 HOH A 177 677 188 HOH HOH . H 7 HOH A 178 678 41 HOH HOH . H 7 HOH A 179 679 224 HOH HOH . H 7 HOH A 180 680 149 HOH HOH . H 7 HOH A 181 681 220 HOH HOH . H 7 HOH A 182 682 228 HOH HOH . H 7 HOH A 183 683 171 HOH HOH . H 7 HOH A 184 684 64 HOH HOH . H 7 HOH A 185 685 210 HOH HOH . H 7 HOH A 186 686 207 HOH HOH . H 7 HOH A 187 687 212 HOH HOH . H 7 HOH A 188 688 167 HOH HOH . H 7 HOH A 189 689 215 HOH HOH . H 7 HOH A 190 690 175 HOH HOH . H 7 HOH A 191 691 235 HOH HOH . H 7 HOH A 192 692 227 HOH HOH . H 7 HOH A 193 693 192 HOH HOH . H 7 HOH A 194 694 44 HOH HOH . H 7 HOH A 195 695 102 HOH HOH . H 7 HOH A 196 696 177 HOH HOH . H 7 HOH A 197 697 49 HOH HOH . H 7 HOH A 198 698 54 HOH HOH . H 7 HOH A 199 699 9 HOH HOH . H 7 HOH A 200 700 169 HOH HOH . H 7 HOH A 201 701 201 HOH HOH . H 7 HOH A 202 702 164 HOH HOH . H 7 HOH A 203 703 183 HOH HOH . H 7 HOH A 204 704 142 HOH HOH . H 7 HOH A 205 705 67 HOH HOH . H 7 HOH A 206 706 163 HOH HOH . H 7 HOH A 207 707 194 HOH HOH . H 7 HOH A 208 708 230 HOH HOH . H 7 HOH A 209 709 45 HOH HOH . H 7 HOH A 210 710 157 HOH HOH . H 7 HOH A 211 711 236 HOH HOH . H 7 HOH A 212 712 168 HOH HOH . H 7 HOH A 213 713 199 HOH HOH . H 7 HOH A 214 714 4 HOH HOH . H 7 HOH A 215 715 217 HOH HOH . H 7 HOH A 216 716 111 HOH HOH . H 7 HOH A 217 717 82 HOH HOH . H 7 HOH A 218 718 66 HOH HOH . H 7 HOH A 219 719 172 HOH HOH . H 7 HOH A 220 720 156 HOH HOH . H 7 HOH A 221 721 108 HOH HOH . H 7 HOH A 222 722 223 HOH HOH . H 7 HOH A 223 723 132 HOH HOH . H 7 HOH A 224 724 18 HOH HOH . H 7 HOH A 225 725 174 HOH HOH . H 7 HOH A 226 726 161 HOH HOH . H 7 HOH A 227 727 232 HOH HOH . H 7 HOH A 228 728 128 HOH HOH . H 7 HOH A 229 729 131 HOH HOH . H 7 HOH A 230 730 234 HOH HOH . H 7 HOH A 231 731 221 HOH HOH . H 7 HOH A 232 732 136 HOH HOH . H 7 HOH A 233 733 48 HOH HOH . H 7 HOH A 234 734 225 HOH HOH . H 7 HOH A 235 735 231 HOH HOH . H 7 HOH A 236 736 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . G 6 28.559 -0.01 31.501 0.52 35.2 ? C TRS 406 A 1 HETATM 2 C C1 TRS . . . G 6 28.561 1.26 32.347 0.52 35.53 ? C1 TRS 406 A 1 HETATM 3 C C2 TRS . . . G 6 29.884 -0.188 30.758 0.52 34.74 ? C2 TRS 406 A 1 HETATM 4 C C3 TRS . . . G 6 28.271 -1.196 32.414 0.52 34.76 ? C3 TRS 406 A 1 HETATM 5 N N TRS . . . G 6 27.49 0.077 30.499 0.52 33.97 ? N TRS 406 A 1 HETATM 6 O O1 TRS . . . G 6 28.825 2.391 31.547 0.52 34.92 ? O1 TRS 406 A 1 HETATM 7 O O2 TRS . . . G 6 30.748 -1.066 31.453 0.52 34.01 ? O2 TRS 406 A 1 HETATM 8 O O3 TRS . . . G 6 28.312 -2.394 31.675 0.52 33.02 ? O3 TRS 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #