data_5K3M # _model_server_result.job_id NIZAdDpqLz538GIWQnnzqg _model_server_result.datetime_utc '2024-11-04 23:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5K3M # _exptl.entry_id 5K3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.7 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ursolic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K3M _cell.length_a 89.702 _cell.length_b 89.702 _cell.length_c 153.793 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C30 H48 O3' _chem_comp.formula_weight 456.7 _chem_comp.id 6Q5 _chem_comp.mon_nstd_flag . _chem_comp.name 'Ursolic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3beta,5beta,18alpha,20beta)-3-hydroxyurs-12-en-28-oic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C3 6Q5 sing 1 n n C16 C1 6Q5 sing 2 n n O2 C28 6Q5 doub 3 n n O3 C28 6Q5 sing 4 n n C11 C17 6Q5 sing 5 n n C11 C2 6Q5 sing 6 n n C17 C7 6Q5 doub 7 n n C25 C9 6Q5 sing 8 n n C28 C14 6Q5 sing 9 n n C3 C2 6Q5 sing 10 n n C3 C13 6Q5 sing 11 n n C3 C5 6Q5 sing 12 n n C1 C2 6Q5 sing 13 n n C1 C4 6Q5 sing 14 n n C1 C6 6Q5 sing 15 n n C20 C13 6Q5 sing 16 n n C20 C18 6Q5 sing 17 n n C7 C10 6Q5 sing 18 n n C7 C4 6Q5 sing 19 n n O1 C18 6Q5 sing 20 n n C8 C5 6Q5 sing 21 n n C8 C6 6Q5 sing 22 n n C12 C4 6Q5 sing 23 n n C12 C15 6Q5 sing 24 n n C10 C14 6Q5 sing 25 n n C10 C21 6Q5 sing 26 n n C5 C9 6Q5 sing 27 n n C4 C22 6Q5 sing 28 n n C9 C18 6Q5 sing 29 n n C9 C26 6Q5 sing 30 n n C14 C15 6Q5 sing 31 n n C14 C23 6Q5 sing 32 n n C29 C21 6Q5 sing 33 n n C21 C24 6Q5 sing 34 n n C27 C23 6Q5 sing 35 n n C27 C24 6Q5 sing 36 n n C24 C30 6Q5 sing 37 n n O3 H1 6Q5 sing 38 n n C15 H2 6Q5 sing 39 n n C15 H3 6Q5 sing 40 n n C12 H4 6Q5 sing 41 n n C12 H5 6Q5 sing 42 n n C22 H6 6Q5 sing 43 n n C22 H7 6Q5 sing 44 n n C22 H8 6Q5 sing 45 n n C16 H9 6Q5 sing 46 n n C16 H10 6Q5 sing 47 n n C16 H11 6Q5 sing 48 n n C23 H12 6Q5 sing 49 n n C23 H13 6Q5 sing 50 n n C27 H14 6Q5 sing 51 n n C27 H15 6Q5 sing 52 n n C24 H16 6Q5 sing 53 n n C30 H17 6Q5 sing 54 n n C30 H18 6Q5 sing 55 n n C30 H19 6Q5 sing 56 n n C21 H20 6Q5 sing 57 n n C29 H21 6Q5 sing 58 n n C29 H22 6Q5 sing 59 n n C29 H23 6Q5 sing 60 n n C10 H24 6Q5 sing 61 n n C17 H26 6Q5 sing 62 n n C11 H28 6Q5 sing 63 n n C11 H29 6Q5 sing 64 n n C2 H30 6Q5 sing 65 n n C19 H31 6Q5 sing 66 n n C19 H32 6Q5 sing 67 n n C19 H33 6Q5 sing 68 n n C13 H34 6Q5 sing 69 n n C13 H35 6Q5 sing 70 n n C20 H36 6Q5 sing 71 n n C20 H37 6Q5 sing 72 n n C18 H38 6Q5 sing 73 n n O1 H39 6Q5 sing 74 n n C25 H40 6Q5 sing 75 n n C25 H41 6Q5 sing 76 n n C25 H42 6Q5 sing 77 n n C26 H43 6Q5 sing 78 n n C26 H44 6Q5 sing 79 n n C26 H45 6Q5 sing 80 n n C5 H46 6Q5 sing 81 n n C8 H47 6Q5 sing 82 n n C8 H48 6Q5 sing 83 n n C6 H49 6Q5 sing 84 n n C6 H50 6Q5 sing 85 n n # _atom_sites.entry_id 5K3M _atom_sites.fract_transf_matrix[1][1] 0.011148 _atom_sites.fract_transf_matrix[1][2] 0.006436 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6Q5 A 1 601 500 6Q5 UUA . D 2 6Q5 B 1 601 500 6Q5 UUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 6Q5 . . . C 2 -13.306 20.831 2.955 1 165.36 ? O3 6Q5 601 A 1 HETATM 2 C C28 6Q5 . . . C 2 -14.357 21.367 3.378 1 168.94 ? C28 6Q5 601 A 1 HETATM 3 O O2 6Q5 . . . C 2 -15.444 21.304 2.762 1 179 ? O2 6Q5 601 A 1 HETATM 4 C C14 6Q5 . . . C 2 -14.296 22.152 4.667 1 154.92 ? C14 6Q5 601 A 1 HETATM 5 C C15 6Q5 . . . C 2 -12.83 22.262 5.068 1 142.59 ? C15 6Q5 601 A 1 HETATM 6 C C12 6Q5 . . . C 2 -12.023 23.27 4.272 1 137.26 ? C12 6Q5 601 A 1 HETATM 7 C C4 6Q5 . . . C 2 -12.617 24.638 4.507 1 149.33 ? C4 6Q5 601 A 1 HETATM 8 C C22 6Q5 . . . C 2 -12.616 24.955 6.002 1 145.34 ? C22 6Q5 601 A 1 HETATM 9 C C1 6Q5 . . . C 2 -11.774 25.686 3.792 1 162.86 ? C1 6Q5 601 A 1 HETATM 10 C C16 6Q5 . . . C 2 -11.392 25.188 2.388 1 170.44 ? C16 6Q5 601 A 1 HETATM 11 C C23 6Q5 . . . C 2 -14.994 21.347 5.764 1 145.35 ? C23 6Q5 601 A 1 HETATM 12 C C27 6Q5 . . . C 2 -16.516 21.412 5.705 1 128.87 ? C27 6Q5 601 A 1 HETATM 13 C C24 6Q5 . . . C 2 -17.027 22.845 5.774 1 114.84 ? C24 6Q5 601 A 1 HETATM 14 C C30 6Q5 . . . C 2 -17.835 23.07 7.044 1 106.15 ? C30 6Q5 601 A 1 HETATM 15 C C21 6Q5 . . . C 2 -15.898 23.863 5.651 1 130.18 ? C21 6Q5 601 A 1 HETATM 16 C C29 6Q5 . . . C 2 -16.508 25.26 5.615 1 124.57 ? C29 6Q5 601 A 1 HETATM 17 C C10 6Q5 . . . C 2 -15.012 23.499 4.443 1 151.06 ? C10 6Q5 601 A 1 HETATM 18 C C7 6Q5 . . . C 2 -14.043 24.578 3.991 1 155.36 ? C7 6Q5 601 A 1 HETATM 19 C C17 6Q5 . . . C 2 -14.458 25.467 3.068 1 160.45 ? C17 6Q5 601 A 1 HETATM 20 C C11 6Q5 . . . C 2 -13.931 26.885 3.066 1 163.57 ? C11 6Q5 601 A 1 HETATM 21 C C2 6Q5 . . . C 2 -12.618 26.979 3.856 1 164.63 ? C2 6Q5 601 A 1 HETATM 22 C C3 6Q5 . . . C 2 -11.883 28.314 3.615 1 166.01 ? C3 6Q5 601 A 1 HETATM 23 C C19 6Q5 . . . C 2 -11.644 28.502 2.112 1 167.85 ? C19 6Q5 601 A 1 HETATM 24 C C13 6Q5 . . . C 2 -12.745 29.475 4.068 1 172.88 ? C13 6Q5 601 A 1 HETATM 25 C C20 6Q5 . . . C 2 -12.017 30.794 3.831 1 169.43 ? C20 6Q5 601 A 1 HETATM 26 C C18 6Q5 . . . C 2 -10.686 30.906 4.568 1 161.36 ? C18 6Q5 601 A 1 HETATM 27 O O1 6Q5 . . . C 2 -9.939 32.003 4.029 1 164.91 ? O1 6Q5 601 A 1 HETATM 28 C C9 6Q5 . . . C 2 -9.805 29.655 4.518 1 152.65 ? C9 6Q5 601 A 1 HETATM 29 C C25 6Q5 . . . C 2 -8.818 29.776 3.355 1 158.11 ? C25 6Q5 601 A 1 HETATM 30 C C26 6Q5 . . . C 2 -8.97 29.658 5.796 1 141.23 ? C26 6Q5 601 A 1 HETATM 31 C C5 6Q5 . . . C 2 -10.61 28.335 4.471 1 159.1 ? C5 6Q5 601 A 1 HETATM 32 C C8 6Q5 . . . C 2 -9.751 27.141 4.085 1 163.88 ? C8 6Q5 601 A 1 HETATM 33 C C6 6Q5 . . . C 2 -10.449 25.858 4.518 1 166.27 ? C6 6Q5 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #