data_5K3M
#
_model_server_result.job_id            yr_-CMiulCcW9sG7GY0u5A 
_model_server_result.datetime_utc      '2024-11-04 23:37:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5K3M 
#
_exptl.entry_id    5K3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.7 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Ursolic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5K3M 
_cell.length_a            89.702 
_cell.length_b            89.702 
_cell.length_c            153.793 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C30 H48 O3' 
_chem_comp.formula_weight    456.7 
_chem_comp.id                6Q5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Ursolic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(3beta,5beta,18alpha,20beta)-3-hydroxyurs-12-en-28-oic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C3 6Q5 sing 1 n n 
C16 C1 6Q5 sing 2 n n 
O2 C28 6Q5 doub 3 n n 
O3 C28 6Q5 sing 4 n n 
C11 C17 6Q5 sing 5 n n 
C11 C2 6Q5 sing 6 n n 
C17 C7 6Q5 doub 7 n n 
C25 C9 6Q5 sing 8 n n 
C28 C14 6Q5 sing 9 n n 
C3 C2 6Q5 sing 10 n n 
C3 C13 6Q5 sing 11 n n 
C3 C5 6Q5 sing 12 n n 
C1 C2 6Q5 sing 13 n n 
C1 C4 6Q5 sing 14 n n 
C1 C6 6Q5 sing 15 n n 
C20 C13 6Q5 sing 16 n n 
C20 C18 6Q5 sing 17 n n 
C7 C10 6Q5 sing 18 n n 
C7 C4 6Q5 sing 19 n n 
O1 C18 6Q5 sing 20 n n 
C8 C5 6Q5 sing 21 n n 
C8 C6 6Q5 sing 22 n n 
C12 C4 6Q5 sing 23 n n 
C12 C15 6Q5 sing 24 n n 
C10 C14 6Q5 sing 25 n n 
C10 C21 6Q5 sing 26 n n 
C5 C9 6Q5 sing 27 n n 
C4 C22 6Q5 sing 28 n n 
C9 C18 6Q5 sing 29 n n 
C9 C26 6Q5 sing 30 n n 
C14 C15 6Q5 sing 31 n n 
C14 C23 6Q5 sing 32 n n 
C29 C21 6Q5 sing 33 n n 
C21 C24 6Q5 sing 34 n n 
C27 C23 6Q5 sing 35 n n 
C27 C24 6Q5 sing 36 n n 
C24 C30 6Q5 sing 37 n n 
O3 H1 6Q5 sing 38 n n 
C15 H2 6Q5 sing 39 n n 
C15 H3 6Q5 sing 40 n n 
C12 H4 6Q5 sing 41 n n 
C12 H5 6Q5 sing 42 n n 
C22 H6 6Q5 sing 43 n n 
C22 H7 6Q5 sing 44 n n 
C22 H8 6Q5 sing 45 n n 
C16 H9 6Q5 sing 46 n n 
C16 H10 6Q5 sing 47 n n 
C16 H11 6Q5 sing 48 n n 
C23 H12 6Q5 sing 49 n n 
C23 H13 6Q5 sing 50 n n 
C27 H14 6Q5 sing 51 n n 
C27 H15 6Q5 sing 52 n n 
C24 H16 6Q5 sing 53 n n 
C30 H17 6Q5 sing 54 n n 
C30 H18 6Q5 sing 55 n n 
C30 H19 6Q5 sing 56 n n 
C21 H20 6Q5 sing 57 n n 
C29 H21 6Q5 sing 58 n n 
C29 H22 6Q5 sing 59 n n 
C29 H23 6Q5 sing 60 n n 
C10 H24 6Q5 sing 61 n n 
C17 H26 6Q5 sing 62 n n 
C11 H28 6Q5 sing 63 n n 
C11 H29 6Q5 sing 64 n n 
C2 H30 6Q5 sing 65 n n 
C19 H31 6Q5 sing 66 n n 
C19 H32 6Q5 sing 67 n n 
C19 H33 6Q5 sing 68 n n 
C13 H34 6Q5 sing 69 n n 
C13 H35 6Q5 sing 70 n n 
C20 H36 6Q5 sing 71 n n 
C20 H37 6Q5 sing 72 n n 
C18 H38 6Q5 sing 73 n n 
O1 H39 6Q5 sing 74 n n 
C25 H40 6Q5 sing 75 n n 
C25 H41 6Q5 sing 76 n n 
C25 H42 6Q5 sing 77 n n 
C26 H43 6Q5 sing 78 n n 
C26 H44 6Q5 sing 79 n n 
C26 H45 6Q5 sing 80 n n 
C5 H46 6Q5 sing 81 n n 
C8 H47 6Q5 sing 82 n n 
C8 H48 6Q5 sing 83 n n 
C6 H49 6Q5 sing 84 n n 
C6 H50 6Q5 sing 85 n n 
#
_atom_sites.entry_id                     5K3M 
_atom_sites.fract_transf_matrix[1][1]    0.011148 
_atom_sites.fract_transf_matrix[1][2]    0.006436 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6Q5 A 1 601 500 6Q5 UUA . 
D 2 6Q5 B 1 601 500 6Q5 UUA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 6Q5 . . . D 2 -25.925 0.089 -1.271 1 179.55 ? O3 6Q5 601 B 1 
HETATM 2 C C28 6Q5 . . . D 2 -25.176 0.393 -2.228 1 172.75 ? C28 6Q5 601 B 1 
HETATM 3 O O2 6Q5 . . . D 2 -23.953 0.606 -2.079 1 176.03 ? O2 6Q5 601 B 1 
HETATM 4 C C14 6Q5 . . . D 2 -25.75 0.472 -3.625 1 152.2 ? C14 6Q5 601 B 1 
HETATM 5 C C15 6Q5 . . . D 2 -25.249 -0.756 -4.369 1 142.52 ? C15 6Q5 601 B 1 
HETATM 6 C C12 6Q5 . . . D 2 -25.819 -2.044 -3.803 1 136.16 ? C12 6Q5 601 B 1 
HETATM 7 C C4 6Q5 . . . D 2 -27.328 -2.062 -3.965 1 130.4 ? C4 6Q5 601 B 1 
HETATM 8 C C22 6Q5 . . . D 2 -27.684 -2.11 -5.451 1 139.37 ? C22 6Q5 601 B 1 
HETATM 9 C C1 6Q5 . . . D 2 -27.887 -3.306 -3.286 1 115.45 ? C1 6Q5 601 B 1 
HETATM 10 C C16 6Q5 . . . D 2 -27.323 -3.431 -1.861 1 112.5 ? C16 6Q5 601 B 1 
HETATM 11 C C23 6Q5 . . . D 2 -25.188 1.715 -4.314 1 149.22 ? C23 6Q5 601 B 1 
HETATM 12 C C27 6Q5 . . . D 2 -26.034 2.971 -4.088 1 130.67 ? C27 6Q5 601 B 1 
HETATM 13 C C24 6Q5 . . . D 2 -27.498 2.788 -4.49 1 113.8 ? C24 6Q5 601 B 1 
HETATM 14 C C30 6Q5 . . . D 2 -27.888 3.69 -5.654 1 117.4 ? C30 6Q5 601 B 1 
HETATM 15 C C21 6Q5 . . . D 2 -27.809 1.328 -4.777 1 106.81 ? C21 6Q5 601 B 1 
HETATM 16 C C29 6Q5 . . . D 2 -29.29 1.154 -5.093 1 96.15 ? C29 6Q5 601 B 1 
HETATM 17 C C10 6Q5 . . . D 2 -27.28 0.55 -3.567 1 129.73 ? C10 6Q5 601 B 1 
HETATM 18 C C7 6Q5 . . . D 2 -27.903 -0.802 -3.343 1 127.5 ? C7 6Q5 601 B 1 
HETATM 19 C C17 6Q5 . . . D 2 -28.967 -0.842 -2.517 1 122.69 ? C17 6Q5 601 B 1 
HETATM 20 C C11 6Q5 . . . D 2 -29.982 -1.952 -2.599 1 118.55 ? C11 6Q5 601 B 1 
HETATM 21 C C2 6Q5 . . . D 2 -29.418 -3.128 -3.401 1 113.64 ? C2 6Q5 601 B 1 
HETATM 22 C C3 6Q5 . . . D 2 -30.286 -4.379 -3.228 1 103.57 ? C3 6Q5 601 B 1 
HETATM 23 C C19 6Q5 . . . D 2 -30.408 -4.718 -1.739 1 115.12 ? C19 6Q5 601 B 1 
HETATM 24 C C13 6Q5 . . . D 2 -31.679 -4.076 -3.736 1 88.88 ? C13 6Q5 601 B 1 
HETATM 25 C C20 6Q5 . . . D 2 -32.577 -5.288 -3.557 1 90.67 ? C20 6Q5 601 B 1 
HETATM 26 C C18 6Q5 . . . D 2 -32.044 -6.6 -4.137 1 101.5 ? C18 6Q5 601 B 1 
HETATM 27 O O1 6Q5 . . . D 2 -32.614 -7.686 -3.394 1 113.9 ? O1 6Q5 601 B 1 
HETATM 28 C C9 6Q5 . . . D 2 -30.521 -6.791 -4.199 1 96.33 ? C9 6Q5 601 B 1 
HETATM 29 C C25 6Q5 . . . D 2 -30.082 -7.804 -3.136 1 97.68 ? C25 6Q5 601 B 1 
HETATM 30 C C26 6Q5 . . . D 2 -30.217 -7.411 -5.561 1 94.59 ? C26 6Q5 601 B 1 
HETATM 31 C C5 6Q5 . . . D 2 -29.699 -5.492 -4.096 1 98.84 ? C5 6Q5 601 B 1 
HETATM 32 C C8 6Q5 . . . D 2 -28.262 -5.762 -3.664 1 100.38 ? C8 6Q5 601 B 1 
HETATM 33 C C6 6Q5 . . . D 2 -27.399 -4.556 -4.007 1 107.37 ? C6 6Q5 601 B 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#