data_5K3N # _model_server_result.job_id enfXFa2FbVwyPAgBV0sz5w _model_server_result.datetime_utc '2024-12-04 07:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 5K3N # _exptl.entry_id 5K3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.517 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-(2H-1,3-benzodioxol-5-yl)-1-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-(2-hydroxy-4,6-dimethoxyphenyl)propan-1-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K3N _cell.length_a 89.467 _cell.length_b 89.467 _cell.length_c 153.731 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C25 H31 N O6' _chem_comp.formula_weight 441.517 _chem_comp.id 6Q6 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-(2H-1,3-benzodioxol-5-yl)-1-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-(2-hydroxy-4,6-dimethoxyphenyl)propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O6 6Q6 sing 1 n n O6 C22 6Q6 sing 2 n n C22 C20 6Q6 doub 3 n y C22 C21 6Q6 sing 4 n y C20 C14 6Q6 sing 5 n y C21 C15 6Q6 doub 6 n y C14 O2 6Q6 sing 7 n n C14 C12 6Q6 doub 8 n y C24 O2 6Q6 sing 9 n n C15 C12 6Q6 sing 10 n y C15 O4 6Q6 sing 11 n n C12 C10 6Q6 sing 12 n n C5 C1 6Q6 sing 13 n n C5 N1 6Q6 sing 14 n n C1 C3 6Q6 sing 15 n n C1 C7 6Q6 sing 16 n n C2 C3 6Q6 sing 17 n n C2 C6 6Q6 sing 18 n n C2 C4 6Q6 sing 19 n n C13 C17 6Q6 doub 20 n y C13 C11 6Q6 sing 21 n y N1 C4 6Q6 sing 22 n n N1 C8 6Q6 sing 23 n n O3 C17 6Q6 sing 24 n n O3 C23 6Q6 sing 25 n n C10 C11 6Q6 sing 26 n n C10 C9 6Q6 sing 27 n n C17 C19 6Q6 sing 28 n y C11 C16 6Q6 doub 29 n y C23 O5 6Q6 sing 30 n n C19 O5 6Q6 sing 31 n n C19 C18 6Q6 doub 32 n y C9 C8 6Q6 sing 33 n n C16 C18 6Q6 sing 34 n y C8 O1 6Q6 doub 35 n n C2 H1 6Q6 sing 36 n n C4 H2 6Q6 sing 37 n n C4 H3 6Q6 sing 38 n n C5 H4 6Q6 sing 39 n n C5 H5 6Q6 sing 40 n n C6 H6 6Q6 sing 41 n n C6 H7 6Q6 sing 42 n n C6 H8 6Q6 sing 43 n n C7 H9 6Q6 sing 44 n n C7 H10 6Q6 sing 45 n n C7 H11 6Q6 sing 46 n n C13 H12 6Q6 sing 47 n n C16 H13 6Q6 sing 48 n n C18 H14 6Q6 sing 49 n n C20 H15 6Q6 sing 50 n n C24 H16 6Q6 sing 51 n n C24 H17 6Q6 sing 52 n n C24 H18 6Q6 sing 53 n n C3 H19 6Q6 sing 54 n n C3 H20 6Q6 sing 55 n n C1 H21 6Q6 sing 56 n n C9 H22 6Q6 sing 57 n n C9 H23 6Q6 sing 58 n n C10 H24 6Q6 sing 59 n n C23 H25 6Q6 sing 60 n n C23 H26 6Q6 sing 61 n n O4 H27 6Q6 sing 62 n n C21 H28 6Q6 sing 63 n n C25 H29 6Q6 sing 64 n n C25 H30 6Q6 sing 65 n n C25 H31 6Q6 sing 66 n n # _atom_sites.entry_id 5K3N _atom_sites.fract_transf_matrix[1][1] 0.011177 _atom_sites.fract_transf_matrix[1][2] 0.006453 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6Q6 A 1 600 600 6Q6 NIH . F 2 6Q6 B 1 600 600 6Q6 NIH . G 2 6Q6 C 1 600 600 6Q6 NIH . H 2 6Q6 D 1 600 600 6Q6 NIH . I 3 HOH A 1 701 10 HOH HOH . I 3 HOH A 2 702 32 HOH HOH . I 3 HOH A 3 703 14 HOH HOH . I 3 HOH A 4 704 20 HOH HOH . I 3 HOH A 5 705 23 HOH HOH . I 3 HOH A 6 706 21 HOH HOH . J 3 HOH B 1 701 22 HOH HOH . J 3 HOH B 2 702 13 HOH HOH . J 3 HOH B 3 703 4 HOH HOH . J 3 HOH B 4 704 9 HOH HOH . J 3 HOH B 5 705 34 HOH HOH . J 3 HOH B 6 706 18 HOH HOH . J 3 HOH B 7 707 28 HOH HOH . J 3 HOH B 8 708 12 HOH HOH . J 3 HOH B 9 709 17 HOH HOH . K 3 HOH C 1 701 29 HOH HOH . K 3 HOH C 2 702 19 HOH HOH . K 3 HOH C 3 703 1 HOH HOH . K 3 HOH C 4 704 25 HOH HOH . K 3 HOH C 5 705 8 HOH HOH . K 3 HOH C 6 706 31 HOH HOH . K 3 HOH C 7 707 15 HOH HOH . K 3 HOH C 8 708 7 HOH HOH . K 3 HOH C 9 709 5 HOH HOH . K 3 HOH C 10 710 26 HOH HOH . K 3 HOH C 11 711 30 HOH HOH . K 3 HOH C 12 712 27 HOH HOH . L 3 HOH D 1 701 11 HOH HOH . L 3 HOH D 2 702 33 HOH HOH . L 3 HOH D 3 703 3 HOH HOH . L 3 HOH D 4 704 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6Q6 . . . E 2 21.261 -23.783 -3.219 1 188.52 ? N1 6Q6 600 A 1 HETATM 2 C C2 6Q6 . . . E 2 23.563 -23.278 -3.871 1 208.14 ? C2 6Q6 600 A 1 HETATM 3 C C4 6Q6 . . . E 2 22.637 -24.266 -3.163 1 197.21 ? C4 6Q6 600 A 1 HETATM 4 C C5 6Q6 . . . E 2 20.949 -22.823 -4.268 1 196.37 ? C5 6Q6 600 A 1 HETATM 5 C C6 6Q6 . . . E 2 25.006 -23.513 -3.436 1 215.91 ? C6 6Q6 600 A 1 HETATM 6 C C7 6Q6 . . . E 2 20.986 -20.773 -2.802 1 205.28 ? C7 6Q6 600 A 1 HETATM 7 C C13 6Q6 . . . E 2 15.405 -24.894 -3.222 1 157.86 ? C13 6Q6 600 A 1 HETATM 8 C C14 6Q6 . . . E 2 17.84 -23.839 -5.549 1 152.53 ? C14 6Q6 600 A 1 HETATM 9 C C15 6Q6 . . . E 2 18.788 -25.956 -4.926 1 161.86 ? C15 6Q6 600 A 1 HETATM 10 C C16 6Q6 . . . E 2 16.293 -22.786 -2.408 1 161.99 ? C16 6Q6 600 A 1 HETATM 11 C C17 6Q6 . . . E 2 14.139 -24.368 -3.001 1 152.85 ? C17 6Q6 600 A 1 HETATM 12 C C18 6Q6 . . . E 2 15.016 -22.274 -2.188 1 158.47 ? C18 6Q6 600 A 1 HETATM 13 C C19 6Q6 . . . E 2 13.962 -23.11 -2.506 1 153.99 ? C19 6Q6 600 A 1 HETATM 14 C C20 6Q6 . . . E 2 18.12 -24.098 -6.879 1 143.68 ? C20 6Q6 600 A 1 HETATM 15 C C24 6Q6 . . . E 2 17.897 -21.42 -5.243 1 142.42 ? C24 6Q6 600 A 1 HETATM 16 O O1 6Q6 . . . E 2 20.645 -25.049 -1.505 1 170.39 ? O1 6Q6 600 A 1 HETATM 17 C C8 6Q6 . . . E 2 20.341 -24.24 -2.368 1 175.09 ? C8 6Q6 600 A 1 HETATM 18 C C3 6Q6 . . . E 2 23.143 -21.838 -3.573 1 209.27 ? C3 6Q6 600 A 1 HETATM 19 C C1 6Q6 . . . E 2 21.686 -21.538 -3.924 1 204.27 ? C1 6Q6 600 A 1 HETATM 20 C C9 6Q6 . . . E 2 18.924 -23.676 -2.483 1 170.74 ? C9 6Q6 600 A 1 HETATM 21 C C10 6Q6 . . . E 2 17.888 -24.586 -3.147 1 167.57 ? C10 6Q6 600 A 1 HETATM 22 C C11 6Q6 . . . E 2 16.497 -24.083 -2.916 1 163.57 ? C11 6Q6 600 A 1 HETATM 23 O O5 6Q6 . . . E 2 12.63 -22.862 -2.369 1 149.83 ? O5 6Q6 600 A 1 HETATM 24 C C23 6Q6 . . . E 2 11.938 -24.108 -2.539 1 147.8 ? C23 6Q6 600 A 1 HETATM 25 O O3 6Q6 . . . E 2 12.91 -24.942 -3.193 1 148.97 ? O3 6Q6 600 A 1 HETATM 26 C C12 6Q6 . . . E 2 18.177 -24.774 -4.585 1 163.78 ? C12 6Q6 600 A 1 HETATM 27 O O4 6Q6 . . . E 2 19.088 -26.819 -3.919 1 164.44 ? O4 6Q6 600 A 1 HETATM 28 C C21 6Q6 . . . E 2 19.09 -26.229 -6.249 1 150.62 ? C21 6Q6 600 A 1 HETATM 29 C C22 6Q6 . . . E 2 18.75 -25.292 -7.212 1 136.31 ? C22 6Q6 600 A 1 HETATM 30 O O6 6Q6 . . . E 2 19.045 -25.561 -8.514 1 116.89 ? O6 6Q6 600 A 1 HETATM 31 C C25 6Q6 . . . E 2 18.77 -24.557 -9.486 1 110.01 ? C25 6Q6 600 A 1 HETATM 32 O O2 6Q6 . . . E 2 17.216 -22.664 -5.236 1 146.42 ? O2 6Q6 600 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #