data_5K3N
#
_model_server_result.job_id            Tj3KtfAhMVTu8pICK2Js2Q 
_model_server_result.datetime_utc      '2024-12-04 07:08:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k3n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":600}' 
#
_entry.id    5K3N 
#
_exptl.entry_id    5K3N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              441.517 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3-(2H-1,3-benzodioxol-5-yl)-1-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-(2-hydroxy-4,6-dimethoxyphenyl)propan-1-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5K3N 
_cell.length_a            89.467 
_cell.length_b            89.467 
_cell.length_c            153.731 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K3N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C25 H31 N O6' 
_chem_comp.formula_weight    441.517 
_chem_comp.id                6Q6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3-(2H-1,3-benzodioxol-5-yl)-1-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-(2-hydroxy-4,6-dimethoxyphenyl)propan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 O6 6Q6 sing 1 n n 
O6 C22 6Q6 sing 2 n n 
C22 C20 6Q6 doub 3 n y 
C22 C21 6Q6 sing 4 n y 
C20 C14 6Q6 sing 5 n y 
C21 C15 6Q6 doub 6 n y 
C14 O2 6Q6 sing 7 n n 
C14 C12 6Q6 doub 8 n y 
C24 O2 6Q6 sing 9 n n 
C15 C12 6Q6 sing 10 n y 
C15 O4 6Q6 sing 11 n n 
C12 C10 6Q6 sing 12 n n 
C5 C1 6Q6 sing 13 n n 
C5 N1 6Q6 sing 14 n n 
C1 C3 6Q6 sing 15 n n 
C1 C7 6Q6 sing 16 n n 
C2 C3 6Q6 sing 17 n n 
C2 C6 6Q6 sing 18 n n 
C2 C4 6Q6 sing 19 n n 
C13 C17 6Q6 doub 20 n y 
C13 C11 6Q6 sing 21 n y 
N1 C4 6Q6 sing 22 n n 
N1 C8 6Q6 sing 23 n n 
O3 C17 6Q6 sing 24 n n 
O3 C23 6Q6 sing 25 n n 
C10 C11 6Q6 sing 26 n n 
C10 C9 6Q6 sing 27 n n 
C17 C19 6Q6 sing 28 n y 
C11 C16 6Q6 doub 29 n y 
C23 O5 6Q6 sing 30 n n 
C19 O5 6Q6 sing 31 n n 
C19 C18 6Q6 doub 32 n y 
C9 C8 6Q6 sing 33 n n 
C16 C18 6Q6 sing 34 n y 
C8 O1 6Q6 doub 35 n n 
C2 H1 6Q6 sing 36 n n 
C4 H2 6Q6 sing 37 n n 
C4 H3 6Q6 sing 38 n n 
C5 H4 6Q6 sing 39 n n 
C5 H5 6Q6 sing 40 n n 
C6 H6 6Q6 sing 41 n n 
C6 H7 6Q6 sing 42 n n 
C6 H8 6Q6 sing 43 n n 
C7 H9 6Q6 sing 44 n n 
C7 H10 6Q6 sing 45 n n 
C7 H11 6Q6 sing 46 n n 
C13 H12 6Q6 sing 47 n n 
C16 H13 6Q6 sing 48 n n 
C18 H14 6Q6 sing 49 n n 
C20 H15 6Q6 sing 50 n n 
C24 H16 6Q6 sing 51 n n 
C24 H17 6Q6 sing 52 n n 
C24 H18 6Q6 sing 53 n n 
C3 H19 6Q6 sing 54 n n 
C3 H20 6Q6 sing 55 n n 
C1 H21 6Q6 sing 56 n n 
C9 H22 6Q6 sing 57 n n 
C9 H23 6Q6 sing 58 n n 
C10 H24 6Q6 sing 59 n n 
C23 H25 6Q6 sing 60 n n 
C23 H26 6Q6 sing 61 n n 
O4 H27 6Q6 sing 62 n n 
C21 H28 6Q6 sing 63 n n 
C25 H29 6Q6 sing 64 n n 
C25 H30 6Q6 sing 65 n n 
C25 H31 6Q6 sing 66 n n 
#
_atom_sites.entry_id                     5K3N 
_atom_sites.fract_transf_matrix[1][1]    0.011177 
_atom_sites.fract_transf_matrix[1][2]    0.006453 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6Q6 A 1 600 600 6Q6 NIH . 
F 2 6Q6 B 1 600 600 6Q6 NIH . 
G 2 6Q6 C 1 600 600 6Q6 NIH . 
H 2 6Q6 D 1 600 600 6Q6 NIH . 
I 3 HOH A 1 701 10 HOH HOH . 
I 3 HOH A 2 702 32 HOH HOH . 
I 3 HOH A 3 703 14 HOH HOH . 
I 3 HOH A 4 704 20 HOH HOH . 
I 3 HOH A 5 705 23 HOH HOH . 
I 3 HOH A 6 706 21 HOH HOH . 
J 3 HOH B 1 701 22 HOH HOH . 
J 3 HOH B 2 702 13 HOH HOH . 
J 3 HOH B 3 703 4 HOH HOH . 
J 3 HOH B 4 704 9 HOH HOH . 
J 3 HOH B 5 705 34 HOH HOH . 
J 3 HOH B 6 706 18 HOH HOH . 
J 3 HOH B 7 707 28 HOH HOH . 
J 3 HOH B 8 708 12 HOH HOH . 
J 3 HOH B 9 709 17 HOH HOH . 
K 3 HOH C 1 701 29 HOH HOH . 
K 3 HOH C 2 702 19 HOH HOH . 
K 3 HOH C 3 703 1 HOH HOH . 
K 3 HOH C 4 704 25 HOH HOH . 
K 3 HOH C 5 705 8 HOH HOH . 
K 3 HOH C 6 706 31 HOH HOH . 
K 3 HOH C 7 707 15 HOH HOH . 
K 3 HOH C 8 708 7 HOH HOH . 
K 3 HOH C 9 709 5 HOH HOH . 
K 3 HOH C 10 710 26 HOH HOH . 
K 3 HOH C 11 711 30 HOH HOH . 
K 3 HOH C 12 712 27 HOH HOH . 
L 3 HOH D 1 701 11 HOH HOH . 
L 3 HOH D 2 702 33 HOH HOH . 
L 3 HOH D 3 703 3 HOH HOH . 
L 3 HOH D 4 704 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 6Q6 . . . F 2 30.922 6.29 23.165 1 115.82 ? N1 6Q6 600 B 1 
HETATM 2 C C2 6Q6 . . . F 2 32.382 7.686 21.806 1 129.7 ? C2 6Q6 600 B 1 
HETATM 3 C C4 6Q6 . . . F 2 32.007 7.271 23.23 1 125.28 ? C4 6Q6 600 B 1 
HETATM 4 C C5 6Q6 . . . F 2 29.72 6.681 22.43 1 116.52 ? C5 6Q6 600 B 1 
HETATM 5 C C6 6Q6 . . . F 2 33.453 8.764 21.816 1 139.66 ? C6 6Q6 600 B 1 
HETATM 6 C C7 6Q6 . . . F 2 28.966 7.559 20.16 1 90.81 ? C7 6Q6 600 B 1 
HETATM 7 C C13 6Q6 . . . F 2 29.329 0.631 22.526 1 97.69 ? C13 6Q6 600 B 1 
HETATM 8 C C14 6Q6 . . . F 2 29.445 3.938 20.619 1 109.21 ? C14 6Q6 600 B 1 
HETATM 9 C C15 6Q6 . . . F 2 31.552 2.891 20.828 1 112.77 ? C15 6Q6 600 B 1 
HETATM 10 C C16 6Q6 . . . F 2 27.774 2.338 23.286 1 111.29 ? C16 6Q6 600 B 1 
HETATM 11 C C17 6Q6 . . . F 2 28.274 -0.266 22.592 1 113.73 ? C17 6Q6 600 B 1 
HETATM 12 C C18 6Q6 . . . F 2 26.733 1.419 23.353 1 120.56 ? C18 6Q6 600 B 1 
HETATM 13 C C19 6Q6 . . . F 2 27.029 0.118 22.989 1 124.37 ? C19 6Q6 600 B 1 
HETATM 14 C C20 6Q6 . . . F 2 29.681 4.227 19.28 1 111.71 ? C20 6Q6 600 B 1 
HETATM 15 C C24 6Q6 . . . F 2 27.189 4.668 20.259 1 87.01 ? C24 6Q6 600 B 1 
HETATM 16 O O1 6Q6 . . . F 2 32.031 4.814 24.435 1 94.48 ? O1 6Q6 600 B 1 
HETATM 17 C C8 6Q6 . . . F 2 31.022 5.123 23.809 1 101.49 ? C8 6Q6 600 B 1 
HETATM 18 C C3 6Q6 . . . F 2 31.165 8.205 21.075 1 116.02 ? C3 6Q6 600 B 1 
HETATM 19 C C1 6Q6 . . . F 2 30.137 7.098 21.014 1 105.4 ? C1 6Q6 600 B 1 
HETATM 20 C C9 6Q6 . . . F 2 29.851 4.162 23.71 1 101.46 ? C9 6Q6 600 B 1 
HETATM 21 C C10 6Q6 . . . F 2 30.153 2.956 22.81 1 103 ? C10 6Q6 600 B 1 
HETATM 22 C C11 6Q6 . . . F 2 29.06 1.951 22.885 1 100.9 ? C11 6Q6 600 B 1 
HETATM 23 O O5 6Q6 . . . F 2 26.204 -0.966 22.984 1 133.25 ? O5 6Q6 600 B 1 
HETATM 24 C C23 6Q6 . . . F 2 27.036 -2.132 22.88 1 132.72 ? C23 6Q6 600 B 1 
HETATM 25 O O3 6Q6 . . . F 2 28.256 -1.608 22.323 1 124.43 ? O3 6Q6 600 B 1 
HETATM 26 C C12 6Q6 . . . F 2 30.378 3.292 21.396 1 110.5 ? C12 6Q6 600 B 1 
HETATM 27 O O4 6Q6 . . . F 2 32.474 2.236 21.584 1 107.98 ? O4 6Q6 600 B 1 
HETATM 28 C C21 6Q6 . . . F 2 31.823 3.161 19.495 1 114.97 ? C21 6Q6 600 B 1 
HETATM 29 C C22 6Q6 . . . F 2 30.88 3.826 18.728 1 108.26 ? C22 6Q6 600 B 1 
HETATM 30 O O6 6Q6 . . . F 2 31.182 4.077 17.425 1 93.89 ? O6 6Q6 600 B 1 
HETATM 31 C C25 6Q6 . . . F 2 30.171 4.368 16.463 1 86.19 ? C25 6Q6 600 B 1 
HETATM 32 O O2 6Q6 . . . F 2 28.252 4.351 21.134 1 99.23 ? O2 6Q6 600 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#