data_5K42 # _model_server_result.job_id 06lj6V_L_UpeGKy433aj6Q _model_server_result.datetime_utc '2024-11-23 04:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5K42 # _exptl.entry_id 5K42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K42 _cell.length_a 127.308 _cell.length_b 127.308 _cell.length_c 206.782 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 1 2 A,B,C,D,E,F,G,H,I,J 1 3 A,B,C,D,E,F,G,H,I,J 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 63.654 -63.654 103.391 3 'crystal symmetry operation' 10_875 -x+3,-y+2,z -1 0 0 0 -1 0 0 0 1 381.924 254.616 0 4 'crystal symmetry operation' 16_775 -y+5/2,-x+5/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 318.27 318.27 103.391 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5K42 _atom_sites.fract_transf_matrix[1][1] 0.007855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDG A 1 501 1 GDG LIG . C 3 NHE A 1 502 1 NHE NHE . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 4 EDO A 1 505 3 EDO EDO . G 4 EDO A 1 506 4 EDO EDO . H 4 EDO A 1 507 5 EDO EDO . I 4 EDO A 1 508 6 EDO EDO . J 5 HOH A 1 601 73 HOH HOH . J 5 HOH A 2 602 89 HOH HOH . J 5 HOH A 3 603 295 HOH HOH . J 5 HOH A 4 604 145 HOH HOH . J 5 HOH A 5 605 162 HOH HOH . J 5 HOH A 6 606 281 HOH HOH . J 5 HOH A 7 607 30 HOH HOH . J 5 HOH A 8 608 195 HOH HOH . J 5 HOH A 9 609 17 HOH HOH . J 5 HOH A 10 610 212 HOH HOH . J 5 HOH A 11 611 179 HOH HOH . J 5 HOH A 12 612 103 HOH HOH . J 5 HOH A 13 613 59 HOH HOH . J 5 HOH A 14 614 88 HOH HOH . J 5 HOH A 15 615 186 HOH HOH . J 5 HOH A 16 616 105 HOH HOH . J 5 HOH A 17 617 287 HOH HOH . J 5 HOH A 18 618 142 HOH HOH . J 5 HOH A 19 619 301 HOH HOH . J 5 HOH A 20 620 307 HOH HOH . J 5 HOH A 21 621 164 HOH HOH . J 5 HOH A 22 622 2 HOH HOH . J 5 HOH A 23 623 206 HOH HOH . J 5 HOH A 24 624 65 HOH HOH . J 5 HOH A 25 625 185 HOH HOH . J 5 HOH A 26 626 5 HOH HOH . J 5 HOH A 27 627 79 HOH HOH . J 5 HOH A 28 628 44 HOH HOH . J 5 HOH A 29 629 36 HOH HOH . J 5 HOH A 30 630 61 HOH HOH . J 5 HOH A 31 631 201 HOH HOH . J 5 HOH A 32 632 115 HOH HOH . J 5 HOH A 33 633 77 HOH HOH . J 5 HOH A 34 634 144 HOH HOH . J 5 HOH A 35 635 177 HOH HOH . J 5 HOH A 36 636 10 HOH HOH . J 5 HOH A 37 637 67 HOH HOH . J 5 HOH A 38 638 169 HOH HOH . J 5 HOH A 39 639 1 HOH HOH . J 5 HOH A 40 640 107 HOH HOH . J 5 HOH A 41 641 57 HOH HOH . J 5 HOH A 42 642 127 HOH HOH . J 5 HOH A 43 643 181 HOH HOH . J 5 HOH A 44 644 7 HOH HOH . J 5 HOH A 45 645 154 HOH HOH . J 5 HOH A 46 646 147 HOH HOH . J 5 HOH A 47 647 269 HOH HOH . J 5 HOH A 48 648 53 HOH HOH . J 5 HOH A 49 649 148 HOH HOH . J 5 HOH A 50 650 31 HOH HOH . J 5 HOH A 51 651 41 HOH HOH . J 5 HOH A 52 652 28 HOH HOH . J 5 HOH A 53 653 233 HOH HOH . J 5 HOH A 54 654 234 HOH HOH . J 5 HOH A 55 655 140 HOH HOH . J 5 HOH A 56 656 40 HOH HOH . J 5 HOH A 57 657 97 HOH HOH . J 5 HOH A 58 658 139 HOH HOH . J 5 HOH A 59 659 196 HOH HOH . J 5 HOH A 60 660 266 HOH HOH . J 5 HOH A 61 661 302 HOH HOH . J 5 HOH A 62 662 68 HOH HOH . J 5 HOH A 63 663 69 HOH HOH . J 5 HOH A 64 664 42 HOH HOH . J 5 HOH A 65 665 16 HOH HOH . J 5 HOH A 66 666 95 HOH HOH . J 5 HOH A 67 667 81 HOH HOH . J 5 HOH A 68 668 116 HOH HOH . J 5 HOH A 69 669 193 HOH HOH . J 5 HOH A 70 670 175 HOH HOH . J 5 HOH A 71 671 268 HOH HOH . J 5 HOH A 72 672 252 HOH HOH . J 5 HOH A 73 673 76 HOH HOH . J 5 HOH A 74 674 3 HOH HOH . J 5 HOH A 75 675 194 HOH HOH . J 5 HOH A 76 676 19 HOH HOH . J 5 HOH A 77 677 126 HOH HOH . J 5 HOH A 78 678 296 HOH HOH . J 5 HOH A 79 679 98 HOH HOH . J 5 HOH A 80 680 189 HOH HOH . J 5 HOH A 81 681 93 HOH HOH . J 5 HOH A 82 682 25 HOH HOH . J 5 HOH A 83 683 209 HOH HOH . J 5 HOH A 84 684 309 HOH HOH . J 5 HOH A 85 685 121 HOH HOH . J 5 HOH A 86 686 308 HOH HOH . J 5 HOH A 87 687 133 HOH HOH . J 5 HOH A 88 688 56 HOH HOH . J 5 HOH A 89 689 20 HOH HOH . J 5 HOH A 90 690 253 HOH HOH . J 5 HOH A 91 691 60 HOH HOH . J 5 HOH A 92 692 117 HOH HOH . J 5 HOH A 93 693 22 HOH HOH . J 5 HOH A 94 694 21 HOH HOH . J 5 HOH A 95 695 4 HOH HOH . J 5 HOH A 96 696 300 HOH HOH . J 5 HOH A 97 697 63 HOH HOH . J 5 HOH A 98 698 108 HOH HOH . J 5 HOH A 99 699 74 HOH HOH . J 5 HOH A 100 700 174 HOH HOH . J 5 HOH A 101 701 239 HOH HOH . J 5 HOH A 102 702 34 HOH HOH . J 5 HOH A 103 703 13 HOH HOH . J 5 HOH A 104 704 178 HOH HOH . J 5 HOH A 105 705 197 HOH HOH . J 5 HOH A 106 706 14 HOH HOH . J 5 HOH A 107 707 8 HOH HOH . J 5 HOH A 108 708 248 HOH HOH . J 5 HOH A 109 709 230 HOH HOH . J 5 HOH A 110 710 224 HOH HOH . J 5 HOH A 111 711 211 HOH HOH . J 5 HOH A 112 712 120 HOH HOH . J 5 HOH A 113 713 94 HOH HOH . J 5 HOH A 114 714 113 HOH HOH . J 5 HOH A 115 715 153 HOH HOH . J 5 HOH A 116 716 118 HOH HOH . J 5 HOH A 117 717 47 HOH HOH . J 5 HOH A 118 718 46 HOH HOH . J 5 HOH A 119 719 304 HOH HOH . J 5 HOH A 120 720 131 HOH HOH . J 5 HOH A 121 721 271 HOH HOH . J 5 HOH A 122 722 6 HOH HOH . J 5 HOH A 123 723 257 HOH HOH . J 5 HOH A 124 724 51 HOH HOH . J 5 HOH A 125 725 33 HOH HOH . J 5 HOH A 126 726 23 HOH HOH . J 5 HOH A 127 727 210 HOH HOH . J 5 HOH A 128 728 9 HOH HOH . J 5 HOH A 129 729 109 HOH HOH . J 5 HOH A 130 730 27 HOH HOH . J 5 HOH A 131 731 71 HOH HOH . J 5 HOH A 132 732 26 HOH HOH . J 5 HOH A 133 733 238 HOH HOH . J 5 HOH A 134 734 24 HOH HOH . J 5 HOH A 135 735 37 HOH HOH . J 5 HOH A 136 736 122 HOH HOH . J 5 HOH A 137 737 198 HOH HOH . J 5 HOH A 138 738 52 HOH HOH . J 5 HOH A 139 739 303 HOH HOH . J 5 HOH A 140 740 168 HOH HOH . J 5 HOH A 141 741 96 HOH HOH . J 5 HOH A 142 742 208 HOH HOH . J 5 HOH A 143 743 150 HOH HOH . J 5 HOH A 144 744 235 HOH HOH . J 5 HOH A 145 745 256 HOH HOH . J 5 HOH A 146 746 39 HOH HOH . J 5 HOH A 147 747 280 HOH HOH . J 5 HOH A 148 748 82 HOH HOH . J 5 HOH A 149 749 207 HOH HOH . J 5 HOH A 150 750 167 HOH HOH . J 5 HOH A 151 751 92 HOH HOH . J 5 HOH A 152 752 129 HOH HOH . J 5 HOH A 153 753 286 HOH HOH . J 5 HOH A 154 754 55 HOH HOH . J 5 HOH A 155 755 90 HOH HOH . J 5 HOH A 156 756 100 HOH HOH . J 5 HOH A 157 757 38 HOH HOH . J 5 HOH A 158 758 138 HOH HOH . J 5 HOH A 159 759 170 HOH HOH . J 5 HOH A 160 760 110 HOH HOH . J 5 HOH A 161 761 214 HOH HOH . J 5 HOH A 162 762 180 HOH HOH . J 5 HOH A 163 763 288 HOH HOH . J 5 HOH A 164 764 228 HOH HOH . J 5 HOH A 165 765 84 HOH HOH . J 5 HOH A 166 766 112 HOH HOH . J 5 HOH A 167 767 15 HOH HOH . J 5 HOH A 168 768 263 HOH HOH . J 5 HOH A 169 769 218 HOH HOH . J 5 HOH A 170 770 267 HOH HOH . J 5 HOH A 171 771 64 HOH HOH . J 5 HOH A 172 772 49 HOH HOH . J 5 HOH A 173 773 265 HOH HOH . J 5 HOH A 174 774 274 HOH HOH . J 5 HOH A 175 775 29 HOH HOH . J 5 HOH A 176 776 223 HOH HOH . J 5 HOH A 177 777 132 HOH HOH . J 5 HOH A 178 778 78 HOH HOH . J 5 HOH A 179 779 128 HOH HOH . J 5 HOH A 180 780 213 HOH HOH . J 5 HOH A 181 781 261 HOH HOH . J 5 HOH A 182 782 156 HOH HOH . J 5 HOH A 183 783 279 HOH HOH . J 5 HOH A 184 784 99 HOH HOH . J 5 HOH A 185 785 72 HOH HOH . J 5 HOH A 186 786 190 HOH HOH . J 5 HOH A 187 787 159 HOH HOH . J 5 HOH A 188 788 270 HOH HOH . J 5 HOH A 189 789 146 HOH HOH . J 5 HOH A 190 790 48 HOH HOH . J 5 HOH A 191 791 191 HOH HOH . J 5 HOH A 192 792 54 HOH HOH . J 5 HOH A 193 793 80 HOH HOH . J 5 HOH A 194 794 58 HOH HOH . J 5 HOH A 195 795 306 HOH HOH . J 5 HOH A 196 796 260 HOH HOH . J 5 HOH A 197 797 114 HOH HOH . J 5 HOH A 198 798 188 HOH HOH . J 5 HOH A 199 799 85 HOH HOH . J 5 HOH A 200 800 124 HOH HOH . J 5 HOH A 201 801 106 HOH HOH . J 5 HOH A 202 802 50 HOH HOH . J 5 HOH A 203 803 134 HOH HOH . J 5 HOH A 204 804 12 HOH HOH . J 5 HOH A 205 805 204 HOH HOH . J 5 HOH A 206 806 149 HOH HOH . J 5 HOH A 207 807 305 HOH HOH . J 5 HOH A 208 808 293 HOH HOH . J 5 HOH A 209 809 43 HOH HOH . J 5 HOH A 210 810 87 HOH HOH . J 5 HOH A 211 811 273 HOH HOH . J 5 HOH A 212 812 172 HOH HOH . J 5 HOH A 213 813 240 HOH HOH . J 5 HOH A 214 814 152 HOH HOH . J 5 HOH A 215 815 32 HOH HOH . J 5 HOH A 216 816 291 HOH HOH . J 5 HOH A 217 817 219 HOH HOH . J 5 HOH A 218 818 163 HOH HOH . J 5 HOH A 219 819 237 HOH HOH . J 5 HOH A 220 820 151 HOH HOH . J 5 HOH A 221 821 173 HOH HOH . J 5 HOH A 222 822 101 HOH HOH . J 5 HOH A 223 823 66 HOH HOH . J 5 HOH A 224 824 135 HOH HOH . J 5 HOH A 225 825 165 HOH HOH . J 5 HOH A 226 826 215 HOH HOH . J 5 HOH A 227 827 123 HOH HOH . J 5 HOH A 228 828 111 HOH HOH . J 5 HOH A 229 829 183 HOH HOH . J 5 HOH A 230 830 245 HOH HOH . J 5 HOH A 231 831 18 HOH HOH . J 5 HOH A 232 832 182 HOH HOH . J 5 HOH A 233 833 83 HOH HOH . J 5 HOH A 234 834 285 HOH HOH . J 5 HOH A 235 835 262 HOH HOH . J 5 HOH A 236 836 86 HOH HOH . J 5 HOH A 237 837 141 HOH HOH . J 5 HOH A 238 838 158 HOH HOH . J 5 HOH A 239 839 227 HOH HOH . J 5 HOH A 240 840 137 HOH HOH . J 5 HOH A 241 841 184 HOH HOH . J 5 HOH A 242 842 221 HOH HOH . J 5 HOH A 243 843 258 HOH HOH . J 5 HOH A 244 844 259 HOH HOH . J 5 HOH A 245 845 275 HOH HOH . J 5 HOH A 246 846 299 HOH HOH . J 5 HOH A 247 847 226 HOH HOH . J 5 HOH A 248 848 246 HOH HOH . J 5 HOH A 249 849 255 HOH HOH . J 5 HOH A 250 850 250 HOH HOH . J 5 HOH A 251 851 222 HOH HOH . J 5 HOH A 252 852 272 HOH HOH . J 5 HOH A 253 853 251 HOH HOH . J 5 HOH A 254 854 11 HOH HOH . J 5 HOH A 255 855 216 HOH HOH . J 5 HOH A 256 856 254 HOH HOH . J 5 HOH A 257 857 283 HOH HOH . J 5 HOH A 258 858 231 HOH HOH . J 5 HOH A 259 859 247 HOH HOH . J 5 HOH A 260 860 205 HOH HOH . J 5 HOH A 261 861 217 HOH HOH . J 5 HOH A 262 862 192 HOH HOH . J 5 HOH A 263 863 187 HOH HOH . J 5 HOH A 264 864 166 HOH HOH . J 5 HOH A 265 865 284 HOH HOH . J 5 HOH A 266 866 171 HOH HOH . J 5 HOH A 267 867 102 HOH HOH . J 5 HOH A 268 868 249 HOH HOH . J 5 HOH A 269 869 294 HOH HOH . J 5 HOH A 270 870 229 HOH HOH . J 5 HOH A 271 871 290 HOH HOH . J 5 HOH A 272 872 220 HOH HOH . J 5 HOH A 273 873 130 HOH HOH . J 5 HOH A 274 874 155 HOH HOH . J 5 HOH A 275 875 276 HOH HOH . J 5 HOH A 276 876 200 HOH HOH . J 5 HOH A 277 877 104 HOH HOH . J 5 HOH A 278 878 225 HOH HOH . J 5 HOH A 279 879 157 HOH HOH . J 5 HOH A 280 880 242 HOH HOH . J 5 HOH A 281 881 161 HOH HOH . J 5 HOH A 282 882 278 HOH HOH . J 5 HOH A 283 883 119 HOH HOH . J 5 HOH A 284 884 264 HOH HOH . J 5 HOH A 285 885 243 HOH HOH . J 5 HOH A 286 886 176 HOH HOH . J 5 HOH A 287 887 277 HOH HOH . J 5 HOH A 288 888 35 HOH HOH . J 5 HOH A 289 889 297 HOH HOH . J 5 HOH A 290 890 160 HOH HOH . J 5 HOH A 291 891 70 HOH HOH . J 5 HOH A 292 892 244 HOH HOH . J 5 HOH A 293 893 241 HOH HOH . J 5 HOH A 294 894 143 HOH HOH . J 5 HOH A 295 895 75 HOH HOH . J 5 HOH A 296 896 91 HOH HOH . J 5 HOH A 297 897 45 HOH HOH . J 5 HOH A 298 898 136 HOH HOH . J 5 HOH A 299 899 236 HOH HOH . J 5 HOH A 300 900 232 HOH HOH . J 5 HOH A 301 901 203 HOH HOH . J 5 HOH A 302 902 282 HOH HOH . J 5 HOH A 303 903 289 HOH HOH . J 5 HOH A 304 904 199 HOH HOH . J 5 HOH A 305 905 62 HOH HOH . J 5 HOH A 306 906 202 HOH HOH . J 5 HOH A 307 907 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 186.131 128.636 24.908 1 54.35 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 4 186.829 127.56 25.544 1 39.09 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 4 186.739 128.888 23.537 1 57.68 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 4 186.864 127.651 22.829 1 54.48 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #