data_5K4I
#
_model_server_result.job_id            aEfXFvlfA51f84ykIdZC-Q 
_model_server_result.datetime_utc      '2024-11-30 04:18:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k4i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5K4I 
#
_exptl.entry_id    5K4I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K4I 
_cell.length_a            43.668 
_cell.length_b            71.333 
_cell.length_c            119.529 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K4I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 135 n n 
C1 C2 EDO sing 136 n n 
C1 H11 EDO sing 137 n n 
C1 H12 EDO sing 138 n n 
O1 HO1 EDO sing 139 n n 
C2 O2 EDO sing 140 n n 
C2 H21 EDO sing 141 n n 
C2 H22 EDO sing 142 n n 
O2 HO2 EDO sing 143 n n 
#
_atom_sites.entry_id                     5K4I 
_atom_sites.fract_transf_matrix[1][1]    0.0229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6QB A 1 401 1 6QB LIG . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 1 EDO EDO . 
E 4 HOH A 1 501 148 HOH HOH . 
E 4 HOH A 2 502 90 HOH HOH . 
E 4 HOH A 3 503 169 HOH HOH . 
E 4 HOH A 4 504 205 HOH HOH . 
E 4 HOH A 5 505 226 HOH HOH . 
E 4 HOH A 6 506 209 HOH HOH . 
E 4 HOH A 7 507 240 HOH HOH . 
E 4 HOH A 8 508 70 HOH HOH . 
E 4 HOH A 9 509 33 HOH HOH . 
E 4 HOH A 10 510 60 HOH HOH . 
E 4 HOH A 11 511 82 HOH HOH . 
E 4 HOH A 12 512 100 HOH HOH . 
E 4 HOH A 13 513 26 HOH HOH . 
E 4 HOH A 14 514 124 HOH HOH . 
E 4 HOH A 15 515 74 HOH HOH . 
E 4 HOH A 16 516 45 HOH HOH . 
E 4 HOH A 17 517 78 HOH HOH . 
E 4 HOH A 18 518 80 HOH HOH . 
E 4 HOH A 19 519 47 HOH HOH . 
E 4 HOH A 20 520 30 HOH HOH . 
E 4 HOH A 21 521 67 HOH HOH . 
E 4 HOH A 22 522 50 HOH HOH . 
E 4 HOH A 23 523 212 HOH HOH . 
E 4 HOH A 24 524 222 HOH HOH . 
E 4 HOH A 25 525 14 HOH HOH . 
E 4 HOH A 26 526 75 HOH HOH . 
E 4 HOH A 27 527 218 HOH HOH . 
E 4 HOH A 28 528 136 HOH HOH . 
E 4 HOH A 29 529 89 HOH HOH . 
E 4 HOH A 30 530 230 HOH HOH . 
E 4 HOH A 31 531 1 HOH HOH . 
E 4 HOH A 32 532 221 HOH HOH . 
E 4 HOH A 33 533 25 HOH HOH . 
E 4 HOH A 34 534 51 HOH HOH . 
E 4 HOH A 35 535 235 HOH HOH . 
E 4 HOH A 36 536 217 HOH HOH . 
E 4 HOH A 37 537 43 HOH HOH . 
E 4 HOH A 38 538 104 HOH HOH . 
E 4 HOH A 39 539 225 HOH HOH . 
E 4 HOH A 40 540 126 HOH HOH . 
E 4 HOH A 41 541 191 HOH HOH . 
E 4 HOH A 42 542 57 HOH HOH . 
E 4 HOH A 43 543 88 HOH HOH . 
E 4 HOH A 44 544 55 HOH HOH . 
E 4 HOH A 45 545 128 HOH HOH . 
E 4 HOH A 46 546 65 HOH HOH . 
E 4 HOH A 47 547 145 HOH HOH . 
E 4 HOH A 48 548 165 HOH HOH . 
E 4 HOH A 49 549 62 HOH HOH . 
E 4 HOH A 50 550 131 HOH HOH . 
E 4 HOH A 51 551 42 HOH HOH . 
E 4 HOH A 52 552 174 HOH HOH . 
E 4 HOH A 53 553 31 HOH HOH . 
E 4 HOH A 54 554 196 HOH HOH . 
E 4 HOH A 55 555 146 HOH HOH . 
E 4 HOH A 56 556 15 HOH HOH . 
E 4 HOH A 57 557 187 HOH HOH . 
E 4 HOH A 58 558 144 HOH HOH . 
E 4 HOH A 59 559 170 HOH HOH . 
E 4 HOH A 60 560 118 HOH HOH . 
E 4 HOH A 61 561 85 HOH HOH . 
E 4 HOH A 62 562 107 HOH HOH . 
E 4 HOH A 63 563 6 HOH HOH . 
E 4 HOH A 64 564 103 HOH HOH . 
E 4 HOH A 65 565 4 HOH HOH . 
E 4 HOH A 66 566 166 HOH HOH . 
E 4 HOH A 67 567 64 HOH HOH . 
E 4 HOH A 68 568 79 HOH HOH . 
E 4 HOH A 69 569 11 HOH HOH . 
E 4 HOH A 70 570 172 HOH HOH . 
E 4 HOH A 71 571 216 HOH HOH . 
E 4 HOH A 72 572 20 HOH HOH . 
E 4 HOH A 73 573 94 HOH HOH . 
E 4 HOH A 74 574 61 HOH HOH . 
E 4 HOH A 75 575 37 HOH HOH . 
E 4 HOH A 76 576 192 HOH HOH . 
E 4 HOH A 77 577 114 HOH HOH . 
E 4 HOH A 78 578 163 HOH HOH . 
E 4 HOH A 79 579 142 HOH HOH . 
E 4 HOH A 80 580 138 HOH HOH . 
E 4 HOH A 81 581 115 HOH HOH . 
E 4 HOH A 82 582 32 HOH HOH . 
E 4 HOH A 83 583 223 HOH HOH . 
E 4 HOH A 84 584 185 HOH HOH . 
E 4 HOH A 85 585 38 HOH HOH . 
E 4 HOH A 86 586 2 HOH HOH . 
E 4 HOH A 87 587 93 HOH HOH . 
E 4 HOH A 88 588 113 HOH HOH . 
E 4 HOH A 89 589 35 HOH HOH . 
E 4 HOH A 90 590 133 HOH HOH . 
E 4 HOH A 91 591 53 HOH HOH . 
E 4 HOH A 92 592 251 HOH HOH . 
E 4 HOH A 93 593 13 HOH HOH . 
E 4 HOH A 94 594 58 HOH HOH . 
E 4 HOH A 95 595 22 HOH HOH . 
E 4 HOH A 96 596 16 HOH HOH . 
E 4 HOH A 97 597 108 HOH HOH . 
E 4 HOH A 98 598 179 HOH HOH . 
E 4 HOH A 99 599 154 HOH HOH . 
E 4 HOH A 100 600 12 HOH HOH . 
E 4 HOH A 101 601 23 HOH HOH . 
E 4 HOH A 102 602 153 HOH HOH . 
E 4 HOH A 103 603 99 HOH HOH . 
E 4 HOH A 104 604 224 HOH HOH . 
E 4 HOH A 105 605 160 HOH HOH . 
E 4 HOH A 106 606 95 HOH HOH . 
E 4 HOH A 107 607 130 HOH HOH . 
E 4 HOH A 108 608 68 HOH HOH . 
E 4 HOH A 109 609 219 HOH HOH . 
E 4 HOH A 110 610 17 HOH HOH . 
E 4 HOH A 111 611 24 HOH HOH . 
E 4 HOH A 112 612 197 HOH HOH . 
E 4 HOH A 113 613 231 HOH HOH . 
E 4 HOH A 114 614 46 HOH HOH . 
E 4 HOH A 115 615 207 HOH HOH . 
E 4 HOH A 116 616 87 HOH HOH . 
E 4 HOH A 117 617 39 HOH HOH . 
E 4 HOH A 118 618 135 HOH HOH . 
E 4 HOH A 119 619 132 HOH HOH . 
E 4 HOH A 120 620 10 HOH HOH . 
E 4 HOH A 121 621 237 HOH HOH . 
E 4 HOH A 122 622 3 HOH HOH . 
E 4 HOH A 123 623 201 HOH HOH . 
E 4 HOH A 124 624 44 HOH HOH . 
E 4 HOH A 125 625 140 HOH HOH . 
E 4 HOH A 126 626 105 HOH HOH . 
E 4 HOH A 127 627 36 HOH HOH . 
E 4 HOH A 128 628 123 HOH HOH . 
E 4 HOH A 129 629 242 HOH HOH . 
E 4 HOH A 130 630 97 HOH HOH . 
E 4 HOH A 131 631 5 HOH HOH . 
E 4 HOH A 132 632 184 HOH HOH . 
E 4 HOH A 133 633 41 HOH HOH . 
E 4 HOH A 134 634 141 HOH HOH . 
E 4 HOH A 135 635 246 HOH HOH . 
E 4 HOH A 136 636 81 HOH HOH . 
E 4 HOH A 137 637 134 HOH HOH . 
E 4 HOH A 138 638 186 HOH HOH . 
E 4 HOH A 139 639 18 HOH HOH . 
E 4 HOH A 140 640 66 HOH HOH . 
E 4 HOH A 141 641 243 HOH HOH . 
E 4 HOH A 142 642 234 HOH HOH . 
E 4 HOH A 143 643 110 HOH HOH . 
E 4 HOH A 144 644 63 HOH HOH . 
E 4 HOH A 145 645 152 HOH HOH . 
E 4 HOH A 146 646 137 HOH HOH . 
E 4 HOH A 147 647 159 HOH HOH . 
E 4 HOH A 148 648 176 HOH HOH . 
E 4 HOH A 149 649 86 HOH HOH . 
E 4 HOH A 150 650 239 HOH HOH . 
E 4 HOH A 151 651 106 HOH HOH . 
E 4 HOH A 152 652 28 HOH HOH . 
E 4 HOH A 153 653 190 HOH HOH . 
E 4 HOH A 154 654 214 HOH HOH . 
E 4 HOH A 155 655 151 HOH HOH . 
E 4 HOH A 156 656 117 HOH HOH . 
E 4 HOH A 157 657 203 HOH HOH . 
E 4 HOH A 158 658 241 HOH HOH . 
E 4 HOH A 159 659 27 HOH HOH . 
E 4 HOH A 160 660 19 HOH HOH . 
E 4 HOH A 161 661 116 HOH HOH . 
E 4 HOH A 162 662 72 HOH HOH . 
E 4 HOH A 163 663 175 HOH HOH . 
E 4 HOH A 164 664 54 HOH HOH . 
E 4 HOH A 165 665 249 HOH HOH . 
E 4 HOH A 166 666 7 HOH HOH . 
E 4 HOH A 167 667 91 HOH HOH . 
E 4 HOH A 168 668 48 HOH HOH . 
E 4 HOH A 169 669 233 HOH HOH . 
E 4 HOH A 170 670 158 HOH HOH . 
E 4 HOH A 171 671 56 HOH HOH . 
E 4 HOH A 172 672 8 HOH HOH . 
E 4 HOH A 173 673 164 HOH HOH . 
E 4 HOH A 174 674 34 HOH HOH . 
E 4 HOH A 175 675 21 HOH HOH . 
E 4 HOH A 176 676 40 HOH HOH . 
E 4 HOH A 177 677 96 HOH HOH . 
E 4 HOH A 178 678 73 HOH HOH . 
E 4 HOH A 179 679 210 HOH HOH . 
E 4 HOH A 180 680 121 HOH HOH . 
E 4 HOH A 181 681 143 HOH HOH . 
E 4 HOH A 182 682 208 HOH HOH . 
E 4 HOH A 183 683 52 HOH HOH . 
E 4 HOH A 184 684 215 HOH HOH . 
E 4 HOH A 185 685 109 HOH HOH . 
E 4 HOH A 186 686 83 HOH HOH . 
E 4 HOH A 187 687 59 HOH HOH . 
E 4 HOH A 188 688 98 HOH HOH . 
E 4 HOH A 189 689 76 HOH HOH . 
E 4 HOH A 190 690 162 HOH HOH . 
E 4 HOH A 191 691 244 HOH HOH . 
E 4 HOH A 192 692 157 HOH HOH . 
E 4 HOH A 193 693 189 HOH HOH . 
E 4 HOH A 194 694 248 HOH HOH . 
E 4 HOH A 195 695 232 HOH HOH . 
E 4 HOH A 196 696 167 HOH HOH . 
E 4 HOH A 197 697 127 HOH HOH . 
E 4 HOH A 198 698 84 HOH HOH . 
E 4 HOH A 199 699 147 HOH HOH . 
E 4 HOH A 200 700 29 HOH HOH . 
E 4 HOH A 201 701 245 HOH HOH . 
E 4 HOH A 202 702 236 HOH HOH . 
E 4 HOH A 203 703 71 HOH HOH . 
E 4 HOH A 204 704 69 HOH HOH . 
E 4 HOH A 205 705 177 HOH HOH . 
E 4 HOH A 206 706 111 HOH HOH . 
E 4 HOH A 207 707 211 HOH HOH . 
E 4 HOH A 208 708 202 HOH HOH . 
E 4 HOH A 209 709 247 HOH HOH . 
E 4 HOH A 210 710 195 HOH HOH . 
E 4 HOH A 211 711 149 HOH HOH . 
E 4 HOH A 212 712 229 HOH HOH . 
E 4 HOH A 213 713 102 HOH HOH . 
E 4 HOH A 214 714 150 HOH HOH . 
E 4 HOH A 215 715 228 HOH HOH . 
E 4 HOH A 216 716 252 HOH HOH . 
E 4 HOH A 217 717 119 HOH HOH . 
E 4 HOH A 218 718 178 HOH HOH . 
E 4 HOH A 219 719 193 HOH HOH . 
E 4 HOH A 220 720 213 HOH HOH . 
E 4 HOH A 221 721 173 HOH HOH . 
E 4 HOH A 222 722 181 HOH HOH . 
E 4 HOH A 223 723 92 HOH HOH . 
E 4 HOH A 224 724 227 HOH HOH . 
E 4 HOH A 225 725 101 HOH HOH . 
E 4 HOH A 226 726 139 HOH HOH . 
E 4 HOH A 227 727 183 HOH HOH . 
E 4 HOH A 228 728 156 HOH HOH . 
E 4 HOH A 229 729 199 HOH HOH . 
E 4 HOH A 230 730 204 HOH HOH . 
E 4 HOH A 231 731 250 HOH HOH . 
E 4 HOH A 232 732 171 HOH HOH . 
E 4 HOH A 233 733 120 HOH HOH . 
E 4 HOH A 234 734 220 HOH HOH . 
E 4 HOH A 235 735 180 HOH HOH . 
E 4 HOH A 236 736 129 HOH HOH . 
E 4 HOH A 237 737 200 HOH HOH . 
E 4 HOH A 238 738 49 HOH HOH . 
E 4 HOH A 239 739 155 HOH HOH . 
E 4 HOH A 240 740 168 HOH HOH . 
E 4 HOH A 241 741 112 HOH HOH . 
E 4 HOH A 242 742 9 HOH HOH . 
E 4 HOH A 243 743 206 HOH HOH . 
E 4 HOH A 244 744 182 HOH HOH . 
E 4 HOH A 245 745 194 HOH HOH . 
E 4 HOH A 246 746 188 HOH HOH . 
E 4 HOH A 247 747 125 HOH HOH . 
E 4 HOH A 248 748 122 HOH HOH . 
E 4 HOH A 249 749 238 HOH HOH . 
E 4 HOH A 250 750 198 HOH HOH . 
E 4 HOH A 251 751 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 14.781 -6.645 19.343 1 49.3 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . C 3 16.143 -7.033 19.522 1 52.97 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . C 3 14.606 -5.785 18.096 1 45.77 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . C 3 13.327 -5.138 18.186 1 44.45 ? O2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#