data_5K4L # _model_server_result.job_id ZMhjewi5LPa_rFRmsk4p9w _model_server_result.datetime_utc '2024-11-12 20:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 5K4L # _exptl.entry_id 5K4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K4L _cell.length_a 159.141 _cell.length_b 159.141 _cell.length_c 92.109 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 682 B CYS 692 1_555 B SG CYS 697 B CYS 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A NE2 HIS 473 A HIS 483 1_555 E NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A OE1 GLU 475 A GLU 485 1_555 E NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A OE2 GLU 475 A GLU 485 1_555 E NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A NE2 HIS 561 A HIS 571 1_555 E NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 A SG CYS 666 A CYS 676 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 A SG CYS 669 A CYS 679 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 A SG CYS 680 A CYS 690 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 A SG CYS 699 A CYS 709 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 E NI NI . A NI 901 1_555 H N11 6QN . A 6QN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc10 B NE2 HIS 473 B HIS 483 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc11 B OE2 GLU 475 B GLU 485 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc12 B NE2 HIS 561 B HIS 571 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 B SG CYS 666 B CYS 676 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc14 B SG CYS 669 B CYS 679 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc15 B SG CYS 689 B CYS 699 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc16 B ND1 HIS 692 B HIS 702 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc17 B SG CYS 697 B CYS 707 1_555 K ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc18 B O CYS 699 B CYS 709 1_555 K ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc19 I NI NI . B NI 901 1_555 L N11 6QN . B 6QN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K4L _atom_sites.fract_transf_matrix[1][1] 0.006284 _atom_sites.fract_transf_matrix[1][2] 0.003628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NI A 1 901 1500 NI NI . F 4 ZN A 1 902 1502 ZN ZN . G 4 ZN A 1 903 1501 ZN ZN . H 5 6QN A 1 904 1 6QN DRG . I 3 NI B 1 901 1500 NI NI . J 4 ZN B 1 902 1502 ZN ZN . K 4 ZN B 1 903 1501 ZN ZN . L 5 6QN B 1 904 1 6QN DRG . M 6 HOH A 1 1001 1 HOH HOH . M 6 HOH A 2 1002 8 HOH HOH . M 6 HOH A 3 1003 21 HOH HOH . M 6 HOH A 4 1004 5 HOH HOH . M 6 HOH A 5 1005 4 HOH HOH . M 6 HOH A 6 1006 20 HOH HOH . M 6 HOH A 7 1007 22 HOH HOH . N 6 HOH B 1 1001 30 HOH HOH . N 6 HOH B 2 1002 24 HOH HOH . N 6 HOH B 3 1003 28 HOH HOH . N 6 HOH B 4 1004 31 HOH HOH . N 6 HOH B 5 1005 16 HOH HOH . N 6 HOH B 6 1006 15 HOH HOH . N 6 HOH B 7 1007 29 HOH HOH . N 6 HOH B 8 1008 23 HOH HOH . N 6 HOH B 9 1009 13 HOH HOH . N 6 HOH B 10 1010 25 HOH HOH . N 6 HOH B 11 1011 19 HOH HOH . N 6 HOH B 12 1012 27 HOH HOH . N 6 HOH B 13 1013 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 178.905 _atom_site.Cartn_y -23.236 _atom_site.Cartn_z -1.781 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 192.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #