data_5K4T # _model_server_result.job_id BXHQzaw5DT5bkC9uqMSBvQ _model_server_result.datetime_utc '2024-12-02 15:46:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1408}' # _entry.id 5K4T # _exptl.entry_id 5K4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K4T _cell.length_a 91.759 _cell.length_b 91.759 _cell.length_c 93.598 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5K4T _atom_sites.fract_transf_matrix[1][1] 0.010898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1401 1 GOL GOL . C 2 GOL A 1 1402 2 GOL GOL . D 2 GOL A 1 1403 3 GOL GOL . E 2 GOL A 1 1404 4 GOL GOL . F 2 GOL A 1 1405 5 GOL GOL . G 2 GOL A 1 1406 6 GOL GOL . H 2 GOL A 1 1407 7 GOL GOL . I 2 GOL A 1 1408 8 GOL GOL . J 3 HOH A 1 1501 29 HOH HOH . J 3 HOH A 2 1502 186 HOH HOH . J 3 HOH A 3 1503 32 HOH HOH . J 3 HOH A 4 1504 131 HOH HOH . J 3 HOH A 5 1505 161 HOH HOH . J 3 HOH A 6 1506 115 HOH HOH . J 3 HOH A 7 1507 202 HOH HOH . J 3 HOH A 8 1508 6 HOH HOH . J 3 HOH A 9 1509 25 HOH HOH . J 3 HOH A 10 1510 2 HOH HOH . J 3 HOH A 11 1511 94 HOH HOH . J 3 HOH A 12 1512 41 HOH HOH . J 3 HOH A 13 1513 24 HOH HOH . J 3 HOH A 14 1514 183 HOH HOH . J 3 HOH A 15 1515 102 HOH HOH . J 3 HOH A 16 1516 65 HOH HOH . J 3 HOH A 17 1517 69 HOH HOH . J 3 HOH A 18 1518 64 HOH HOH . J 3 HOH A 19 1519 34 HOH HOH . J 3 HOH A 20 1520 169 HOH HOH . J 3 HOH A 21 1521 189 HOH HOH . J 3 HOH A 22 1522 26 HOH HOH . J 3 HOH A 23 1523 98 HOH HOH . J 3 HOH A 24 1524 117 HOH HOH . J 3 HOH A 25 1525 7 HOH HOH . J 3 HOH A 26 1526 50 HOH HOH . J 3 HOH A 27 1527 12 HOH HOH . J 3 HOH A 28 1528 96 HOH HOH . J 3 HOH A 29 1529 208 HOH HOH . J 3 HOH A 30 1530 125 HOH HOH . J 3 HOH A 31 1531 82 HOH HOH . J 3 HOH A 32 1532 13 HOH HOH . J 3 HOH A 33 1533 110 HOH HOH . J 3 HOH A 34 1534 57 HOH HOH . J 3 HOH A 35 1535 4 HOH HOH . J 3 HOH A 36 1536 126 HOH HOH . J 3 HOH A 37 1537 42 HOH HOH . J 3 HOH A 38 1538 67 HOH HOH . J 3 HOH A 39 1539 157 HOH HOH . J 3 HOH A 40 1540 55 HOH HOH . J 3 HOH A 41 1541 85 HOH HOH . J 3 HOH A 42 1542 9 HOH HOH . J 3 HOH A 43 1543 37 HOH HOH . J 3 HOH A 44 1544 10 HOH HOH . J 3 HOH A 45 1545 16 HOH HOH . J 3 HOH A 46 1546 175 HOH HOH . J 3 HOH A 47 1547 45 HOH HOH . J 3 HOH A 48 1548 174 HOH HOH . J 3 HOH A 49 1549 81 HOH HOH . J 3 HOH A 50 1550 1 HOH HOH . J 3 HOH A 51 1551 118 HOH HOH . J 3 HOH A 52 1552 124 HOH HOH . J 3 HOH A 53 1553 71 HOH HOH . J 3 HOH A 54 1554 97 HOH HOH . J 3 HOH A 55 1555 158 HOH HOH . J 3 HOH A 56 1556 21 HOH HOH . J 3 HOH A 57 1557 48 HOH HOH . J 3 HOH A 58 1558 95 HOH HOH . J 3 HOH A 59 1559 61 HOH HOH . J 3 HOH A 60 1560 27 HOH HOH . J 3 HOH A 61 1561 49 HOH HOH . J 3 HOH A 62 1562 38 HOH HOH . J 3 HOH A 63 1563 213 HOH HOH . J 3 HOH A 64 1564 62 HOH HOH . J 3 HOH A 65 1565 144 HOH HOH . J 3 HOH A 66 1566 3 HOH HOH . J 3 HOH A 67 1567 130 HOH HOH . J 3 HOH A 68 1568 33 HOH HOH . J 3 HOH A 69 1569 129 HOH HOH . J 3 HOH A 70 1570 179 HOH HOH . J 3 HOH A 71 1571 14 HOH HOH . J 3 HOH A 72 1572 75 HOH HOH . J 3 HOH A 73 1573 22 HOH HOH . J 3 HOH A 74 1574 113 HOH HOH . J 3 HOH A 75 1575 44 HOH HOH . J 3 HOH A 76 1576 107 HOH HOH . J 3 HOH A 77 1577 105 HOH HOH . J 3 HOH A 78 1578 47 HOH HOH . J 3 HOH A 79 1579 121 HOH HOH . J 3 HOH A 80 1580 30 HOH HOH . J 3 HOH A 81 1581 46 HOH HOH . J 3 HOH A 82 1582 108 HOH HOH . J 3 HOH A 83 1583 100 HOH HOH . J 3 HOH A 84 1584 28 HOH HOH . J 3 HOH A 85 1585 195 HOH HOH . J 3 HOH A 86 1586 76 HOH HOH . J 3 HOH A 87 1587 159 HOH HOH . J 3 HOH A 88 1588 173 HOH HOH . J 3 HOH A 89 1589 87 HOH HOH . J 3 HOH A 90 1590 80 HOH HOH . J 3 HOH A 91 1591 192 HOH HOH . J 3 HOH A 92 1592 128 HOH HOH . J 3 HOH A 93 1593 112 HOH HOH . J 3 HOH A 94 1594 51 HOH HOH . J 3 HOH A 95 1595 162 HOH HOH . J 3 HOH A 96 1596 36 HOH HOH . J 3 HOH A 97 1597 31 HOH HOH . J 3 HOH A 98 1598 70 HOH HOH . J 3 HOH A 99 1599 106 HOH HOH . J 3 HOH A 100 1600 109 HOH HOH . J 3 HOH A 101 1601 90 HOH HOH . J 3 HOH A 102 1602 73 HOH HOH . J 3 HOH A 103 1603 127 HOH HOH . J 3 HOH A 104 1604 23 HOH HOH . J 3 HOH A 105 1605 58 HOH HOH . J 3 HOH A 106 1606 101 HOH HOH . J 3 HOH A 107 1607 15 HOH HOH . J 3 HOH A 108 1608 166 HOH HOH . J 3 HOH A 109 1609 137 HOH HOH . J 3 HOH A 110 1610 201 HOH HOH . J 3 HOH A 111 1611 72 HOH HOH . J 3 HOH A 112 1612 11 HOH HOH . J 3 HOH A 113 1613 168 HOH HOH . J 3 HOH A 114 1614 136 HOH HOH . J 3 HOH A 115 1615 89 HOH HOH . J 3 HOH A 116 1616 91 HOH HOH . J 3 HOH A 117 1617 17 HOH HOH . J 3 HOH A 118 1618 182 HOH HOH . J 3 HOH A 119 1619 35 HOH HOH . J 3 HOH A 120 1620 8 HOH HOH . J 3 HOH A 121 1621 103 HOH HOH . J 3 HOH A 122 1622 43 HOH HOH . J 3 HOH A 123 1623 20 HOH HOH . J 3 HOH A 124 1624 66 HOH HOH . J 3 HOH A 125 1625 19 HOH HOH . J 3 HOH A 126 1626 56 HOH HOH . J 3 HOH A 127 1627 141 HOH HOH . J 3 HOH A 128 1628 203 HOH HOH . J 3 HOH A 129 1629 156 HOH HOH . J 3 HOH A 130 1630 78 HOH HOH . J 3 HOH A 131 1631 5 HOH HOH . J 3 HOH A 132 1632 177 HOH HOH . J 3 HOH A 133 1633 123 HOH HOH . J 3 HOH A 134 1634 99 HOH HOH . J 3 HOH A 135 1635 206 HOH HOH . J 3 HOH A 136 1636 176 HOH HOH . J 3 HOH A 137 1637 196 HOH HOH . J 3 HOH A 138 1638 93 HOH HOH . J 3 HOH A 139 1639 104 HOH HOH . J 3 HOH A 140 1640 165 HOH HOH . J 3 HOH A 141 1641 171 HOH HOH . J 3 HOH A 142 1642 79 HOH HOH . J 3 HOH A 143 1643 111 HOH HOH . J 3 HOH A 144 1644 114 HOH HOH . J 3 HOH A 145 1645 84 HOH HOH . J 3 HOH A 146 1646 86 HOH HOH . J 3 HOH A 147 1647 116 HOH HOH . J 3 HOH A 148 1648 39 HOH HOH . J 3 HOH A 149 1649 119 HOH HOH . J 3 HOH A 150 1650 163 HOH HOH . J 3 HOH A 151 1651 88 HOH HOH . J 3 HOH A 152 1652 63 HOH HOH . J 3 HOH A 153 1653 77 HOH HOH . J 3 HOH A 154 1654 185 HOH HOH . J 3 HOH A 155 1655 74 HOH HOH . J 3 HOH A 156 1656 160 HOH HOH . J 3 HOH A 157 1657 149 HOH HOH . J 3 HOH A 158 1658 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 43.67 13.653 11.006 1 52.89 ? C1 GOL 1408 A 1 HETATM 2 O O1 GOL . . . I 2 43.142 13.217 9.75 1 56.37 ? O1 GOL 1408 A 1 HETATM 3 C C2 GOL . . . I 2 42.608 13.309 12.043 1 42.48 ? C2 GOL 1408 A 1 HETATM 4 O O2 GOL . . . I 2 41.591 14.225 11.84 1 37.1 ? O2 GOL 1408 A 1 HETATM 5 C C3 GOL . . . I 2 43.149 13.587 13.425 1 39.8 ? C3 GOL 1408 A 1 HETATM 6 O O3 GOL . . . I 2 43.543 12.461 14.199 1 23.59 ? O3 GOL 1408 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #