data_5K4U
#
_model_server_result.job_id            mgJxF4_-lRp4I8JsQMKXsg 
_model_server_result.datetime_utc      '2024-12-03 23:10:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k4u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":6404}' 
#
_entry.id    5K4U 
#
_exptl.entry_id    5K4U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K4U 
_cell.length_a            90.074 
_cell.length_b            133.095 
_cell.length_c            55.606 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K4U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     5K4U 
_atom_sites.fract_transf_matrix[1][1]    0.011102 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 6401 6400 NAD NAD . 
D 3 GOL A 1 6402 1 GOL GOL . 
E 3 GOL A 1 6403 2 GOL GOL . 
F 4 ACT A 1 6404 3 ACT ACT . 
G 4 ACT A 1 6405 4 ACT ACT . 
H 4 ACT A 1 6406 6 ACT ACT . 
I 4 ACT A 1 6407 7 ACT ACT . 
J 2 NAD C 1 6401 6400 NAD NAD . 
K 3 GOL C 1 6402 3 GOL GOL . 
L 3 GOL C 1 6403 4 GOL GOL . 
M 3 GOL C 1 6404 5 GOL GOL . 
N 4 ACT C 1 6405 5 ACT ACT . 
O 5 HOH A 1 6501 175 HOH HOH . 
O 5 HOH A 2 6502 77 HOH HOH . 
O 5 HOH A 3 6503 4 HOH HOH . 
O 5 HOH A 4 6504 40 HOH HOH . 
O 5 HOH A 5 6505 25 HOH HOH . 
O 5 HOH A 6 6506 17 HOH HOH . 
O 5 HOH A 7 6507 67 HOH HOH . 
O 5 HOH A 8 6508 158 HOH HOH . 
O 5 HOH A 9 6509 70 HOH HOH . 
O 5 HOH A 10 6510 157 HOH HOH . 
O 5 HOH A 11 6511 87 HOH HOH . 
O 5 HOH A 12 6512 35 HOH HOH . 
O 5 HOH A 13 6513 83 HOH HOH . 
O 5 HOH A 14 6514 11 HOH HOH . 
O 5 HOH A 15 6515 2 HOH HOH . 
O 5 HOH A 16 6516 5 HOH HOH . 
O 5 HOH A 17 6517 79 HOH HOH . 
O 5 HOH A 18 6518 38 HOH HOH . 
O 5 HOH A 19 6519 211 HOH HOH . 
O 5 HOH A 20 6520 123 HOH HOH . 
O 5 HOH A 21 6521 7 HOH HOH . 
O 5 HOH A 22 6522 21 HOH HOH . 
O 5 HOH A 23 6523 69 HOH HOH . 
O 5 HOH A 24 6524 198 HOH HOH . 
O 5 HOH A 25 6525 82 HOH HOH . 
O 5 HOH A 26 6526 218 HOH HOH . 
O 5 HOH A 27 6527 58 HOH HOH . 
O 5 HOH A 28 6528 20 HOH HOH . 
O 5 HOH A 29 6529 72 HOH HOH . 
O 5 HOH A 30 6530 49 HOH HOH . 
O 5 HOH A 31 6531 184 HOH HOH . 
O 5 HOH A 32 6532 6 HOH HOH . 
O 5 HOH A 33 6533 28 HOH HOH . 
O 5 HOH A 34 6534 32 HOH HOH . 
O 5 HOH A 35 6535 94 HOH HOH . 
O 5 HOH A 36 6536 97 HOH HOH . 
O 5 HOH A 37 6537 66 HOH HOH . 
O 5 HOH A 38 6538 197 HOH HOH . 
O 5 HOH A 39 6539 45 HOH HOH . 
O 5 HOH A 40 6540 47 HOH HOH . 
O 5 HOH A 41 6541 29 HOH HOH . 
O 5 HOH A 42 6542 14 HOH HOH . 
O 5 HOH A 43 6543 23 HOH HOH . 
O 5 HOH A 44 6544 27 HOH HOH . 
O 5 HOH A 45 6545 15 HOH HOH . 
O 5 HOH A 46 6546 16 HOH HOH . 
O 5 HOH A 47 6547 80 HOH HOH . 
O 5 HOH A 48 6548 81 HOH HOH . 
O 5 HOH A 49 6549 76 HOH HOH . 
O 5 HOH A 50 6550 37 HOH HOH . 
O 5 HOH A 51 6551 212 HOH HOH . 
O 5 HOH A 52 6552 39 HOH HOH . 
O 5 HOH A 53 6553 88 HOH HOH . 
O 5 HOH A 54 6554 85 HOH HOH . 
O 5 HOH A 55 6555 75 HOH HOH . 
O 5 HOH A 56 6556 46 HOH HOH . 
O 5 HOH A 57 6557 1 HOH HOH . 
O 5 HOH A 58 6558 177 HOH HOH . 
O 5 HOH A 59 6559 43 HOH HOH . 
O 5 HOH A 60 6560 225 HOH HOH . 
O 5 HOH A 61 6561 62 HOH HOH . 
O 5 HOH A 62 6562 74 HOH HOH . 
O 5 HOH A 63 6563 13 HOH HOH . 
O 5 HOH A 64 6564 48 HOH HOH . 
O 5 HOH A 65 6565 86 HOH HOH . 
O 5 HOH A 66 6566 36 HOH HOH . 
O 5 HOH A 67 6567 3 HOH HOH . 
O 5 HOH A 68 6568 89 HOH HOH . 
O 5 HOH A 69 6569 30 HOH HOH . 
O 5 HOH A 70 6570 78 HOH HOH . 
O 5 HOH A 71 6571 53 HOH HOH . 
O 5 HOH A 72 6572 187 HOH HOH . 
O 5 HOH A 73 6573 52 HOH HOH . 
O 5 HOH A 74 6574 42 HOH HOH . 
O 5 HOH A 75 6575 164 HOH HOH . 
O 5 HOH A 76 6576 19 HOH HOH . 
O 5 HOH A 77 6577 168 HOH HOH . 
O 5 HOH A 78 6578 71 HOH HOH . 
O 5 HOH A 79 6579 51 HOH HOH . 
O 5 HOH A 80 6580 84 HOH HOH . 
O 5 HOH A 81 6581 189 HOH HOH . 
O 5 HOH A 82 6582 91 HOH HOH . 
O 5 HOH A 83 6583 55 HOH HOH . 
O 5 HOH A 84 6584 33 HOH HOH . 
O 5 HOH A 85 6585 92 HOH HOH . 
O 5 HOH A 86 6586 213 HOH HOH . 
O 5 HOH A 87 6587 196 HOH HOH . 
O 5 HOH A 88 6588 224 HOH HOH . 
O 5 HOH A 89 6589 41 HOH HOH . 
O 5 HOH A 90 6590 9 HOH HOH . 
O 5 HOH A 91 6591 50 HOH HOH . 
O 5 HOH A 92 6592 93 HOH HOH . 
O 5 HOH A 93 6593 90 HOH HOH . 
O 5 HOH A 94 6594 203 HOH HOH . 
O 5 HOH A 95 6595 188 HOH HOH . 
O 5 HOH A 96 6596 10 HOH HOH . 
O 5 HOH A 97 6597 220 HOH HOH . 
O 5 HOH A 98 6598 192 HOH HOH . 
O 5 HOH A 99 6599 163 HOH HOH . 
O 5 HOH A 100 6600 56 HOH HOH . 
O 5 HOH A 101 6601 8 HOH HOH . 
O 5 HOH A 102 6602 44 HOH HOH . 
O 5 HOH A 103 6603 199 HOH HOH . 
O 5 HOH A 104 6604 156 HOH HOH . 
O 5 HOH A 105 6605 160 HOH HOH . 
O 5 HOH A 106 6606 216 HOH HOH . 
O 5 HOH A 107 6607 161 HOH HOH . 
O 5 HOH A 108 6608 227 HOH HOH . 
O 5 HOH A 109 6609 73 HOH HOH . 
O 5 HOH A 110 6610 176 HOH HOH . 
O 5 HOH A 111 6611 18 HOH HOH . 
O 5 HOH A 112 6612 159 HOH HOH . 
O 5 HOH A 113 6613 191 HOH HOH . 
O 5 HOH A 114 6614 12 HOH HOH . 
O 5 HOH A 115 6615 204 HOH HOH . 
O 5 HOH A 116 6616 166 HOH HOH . 
O 5 HOH A 117 6617 31 HOH HOH . 
O 5 HOH A 118 6618 193 HOH HOH . 
O 5 HOH A 119 6619 217 HOH HOH . 
O 5 HOH A 120 6620 95 HOH HOH . 
O 5 HOH A 121 6621 57 HOH HOH . 
O 5 HOH A 122 6622 195 HOH HOH . 
O 5 HOH A 123 6623 194 HOH HOH . 
O 5 HOH A 124 6624 169 HOH HOH . 
O 5 HOH A 125 6625 96 HOH HOH . 
P 5 HOH C 1 6501 186 HOH HOH . 
P 5 HOH C 2 6502 210 HOH HOH . 
P 5 HOH C 3 6503 140 HOH HOH . 
P 5 HOH C 4 6504 111 HOH HOH . 
P 5 HOH C 5 6505 118 HOH HOH . 
P 5 HOH C 6 6506 22 HOH HOH . 
P 5 HOH C 7 6507 181 HOH HOH . 
P 5 HOH C 8 6508 108 HOH HOH . 
P 5 HOH C 9 6509 207 HOH HOH . 
P 5 HOH C 10 6510 100 HOH HOH . 
P 5 HOH C 11 6511 122 HOH HOH . 
P 5 HOH C 12 6512 219 HOH HOH . 
P 5 HOH C 13 6513 149 HOH HOH . 
P 5 HOH C 14 6514 61 HOH HOH . 
P 5 HOH C 15 6515 141 HOH HOH . 
P 5 HOH C 16 6516 139 HOH HOH . 
P 5 HOH C 17 6517 226 HOH HOH . 
P 5 HOH C 18 6518 214 HOH HOH . 
P 5 HOH C 19 6519 165 HOH HOH . 
P 5 HOH C 20 6520 126 HOH HOH . 
P 5 HOH C 21 6521 98 HOH HOH . 
P 5 HOH C 22 6522 202 HOH HOH . 
P 5 HOH C 23 6523 183 HOH HOH . 
P 5 HOH C 24 6524 151 HOH HOH . 
P 5 HOH C 25 6525 167 HOH HOH . 
P 5 HOH C 26 6526 99 HOH HOH . 
P 5 HOH C 27 6527 107 HOH HOH . 
P 5 HOH C 28 6528 121 HOH HOH . 
P 5 HOH C 29 6529 206 HOH HOH . 
P 5 HOH C 30 6530 125 HOH HOH . 
P 5 HOH C 31 6531 154 HOH HOH . 
P 5 HOH C 32 6532 109 HOH HOH . 
P 5 HOH C 33 6533 134 HOH HOH . 
P 5 HOH C 34 6534 147 HOH HOH . 
P 5 HOH C 35 6535 172 HOH HOH . 
P 5 HOH C 36 6536 64 HOH HOH . 
P 5 HOH C 37 6537 142 HOH HOH . 
P 5 HOH C 38 6538 135 HOH HOH . 
P 5 HOH C 39 6539 127 HOH HOH . 
P 5 HOH C 40 6540 129 HOH HOH . 
P 5 HOH C 41 6541 114 HOH HOH . 
P 5 HOH C 42 6542 101 HOH HOH . 
P 5 HOH C 43 6543 131 HOH HOH . 
P 5 HOH C 44 6544 103 HOH HOH . 
P 5 HOH C 45 6545 138 HOH HOH . 
P 5 HOH C 46 6546 128 HOH HOH . 
P 5 HOH C 47 6547 228 HOH HOH . 
P 5 HOH C 48 6548 209 HOH HOH . 
P 5 HOH C 49 6549 205 HOH HOH . 
P 5 HOH C 50 6550 115 HOH HOH . 
P 5 HOH C 51 6551 133 HOH HOH . 
P 5 HOH C 52 6552 185 HOH HOH . 
P 5 HOH C 53 6553 119 HOH HOH . 
P 5 HOH C 54 6554 215 HOH HOH . 
P 5 HOH C 55 6555 222 HOH HOH . 
P 5 HOH C 56 6556 170 HOH HOH . 
P 5 HOH C 57 6557 65 HOH HOH . 
P 5 HOH C 58 6558 146 HOH HOH . 
P 5 HOH C 59 6559 54 HOH HOH . 
P 5 HOH C 60 6560 150 HOH HOH . 
P 5 HOH C 61 6561 190 HOH HOH . 
P 5 HOH C 62 6562 173 HOH HOH . 
P 5 HOH C 63 6563 137 HOH HOH . 
P 5 HOH C 64 6564 201 HOH HOH . 
P 5 HOH C 65 6565 60 HOH HOH . 
P 5 HOH C 66 6566 136 HOH HOH . 
P 5 HOH C 67 6567 153 HOH HOH . 
P 5 HOH C 68 6568 104 HOH HOH . 
P 5 HOH C 69 6569 152 HOH HOH . 
P 5 HOH C 70 6570 171 HOH HOH . 
P 5 HOH C 71 6571 116 HOH HOH . 
P 5 HOH C 72 6572 155 HOH HOH . 
P 5 HOH C 73 6573 26 HOH HOH . 
P 5 HOH C 74 6574 144 HOH HOH . 
P 5 HOH C 75 6575 105 HOH HOH . 
P 5 HOH C 76 6576 148 HOH HOH . 
P 5 HOH C 77 6577 130 HOH HOH . 
P 5 HOH C 78 6578 221 HOH HOH . 
P 5 HOH C 79 6579 145 HOH HOH . 
P 5 HOH C 80 6580 223 HOH HOH . 
P 5 HOH C 81 6581 200 HOH HOH . 
P 5 HOH C 82 6582 59 HOH HOH . 
P 5 HOH C 83 6583 162 HOH HOH . 
P 5 HOH C 84 6584 178 HOH HOH . 
P 5 HOH C 85 6585 34 HOH HOH . 
P 5 HOH C 86 6586 180 HOH HOH . 
P 5 HOH C 87 6587 182 HOH HOH . 
P 5 HOH C 88 6588 112 HOH HOH . 
P 5 HOH C 89 6589 132 HOH HOH . 
P 5 HOH C 90 6590 68 HOH HOH . 
P 5 HOH C 91 6591 102 HOH HOH . 
P 5 HOH C 92 6592 120 HOH HOH . 
P 5 HOH C 93 6593 110 HOH HOH . 
P 5 HOH C 94 6594 179 HOH HOH . 
P 5 HOH C 95 6595 24 HOH HOH . 
P 5 HOH C 96 6596 208 HOH HOH . 
P 5 HOH C 97 6597 106 HOH HOH . 
P 5 HOH C 98 6598 117 HOH HOH . 
P 5 HOH C 99 6599 63 HOH HOH . 
P 5 HOH C 100 6600 124 HOH HOH . 
P 5 HOH C 101 6601 143 HOH HOH . 
P 5 HOH C 102 6602 113 HOH HOH . 
P 5 HOH C 103 6603 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 3 -7.466 1.38 1.656 1 39.93 ? C1 GOL 6404 C 1 
HETATM 2 O O1 GOL . . . M 3 -7.037 1.809 2.994 1 39.85 ? O1 GOL 6404 C 1 
HETATM 3 C C2 GOL . . . M 3 -6.401 1.627 0.581 1 44.66 ? C2 GOL 6404 C 1 
HETATM 4 O O2 GOL . . . M 3 -6.412 0.786 -0.588 1 43.45 ? O2 GOL 6404 C 1 
HETATM 5 C C3 GOL . . . M 3 -6.54 3.017 -0.009 1 43.17 ? C3 GOL 6404 C 1 
HETATM 6 O O3 GOL . . . M 3 -5.933 3.02 -1.313 1 45.18 ? O3 GOL 6404 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#