data_5K4Z # _model_server_result.job_id PJT92PkouZOc48fOGSLMnA _model_server_result.datetime_utc '2025-04-16 23:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5K4Z # _exptl.entry_id 5K4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K4Z _cell.length_a 89.27 _cell.length_b 89.27 _cell.length_c 84.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.27 89.27 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 89.27 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.27 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 224 n n P O2P IMP sing 225 n n P O3P IMP sing 226 n n P O5' IMP sing 227 n n O2P HOP2 IMP sing 228 n n O3P HOP3 IMP sing 229 n n O5' C5' IMP sing 230 n n C5' C4' IMP sing 231 n n C5' "H5'1" IMP sing 232 n n C5' "H5'2" IMP sing 233 n n C4' O4' IMP sing 234 n n C4' C3' IMP sing 235 n n C4' H4' IMP sing 236 n n O4' C1' IMP sing 237 n n C3' O3' IMP sing 238 n n C3' C2' IMP sing 239 n n C3' H3' IMP sing 240 n n O3' HO3' IMP sing 241 n n C2' O2' IMP sing 242 n n C2' C1' IMP sing 243 n n C2' H2' IMP sing 244 n n O2' HO2' IMP sing 245 n n C1' N9 IMP sing 246 n n C1' H1' IMP sing 247 n n N9 C8 IMP sing 248 n y N9 C4 IMP sing 249 n y C8 N7 IMP doub 250 n y C8 H8 IMP sing 251 n n N7 C5 IMP sing 252 n y C5 C6 IMP sing 253 n n C5 C4 IMP doub 254 n y C6 O6 IMP doub 255 n n C6 N1 IMP sing 256 n n N1 C2 IMP sing 257 n n N1 HN1 IMP sing 258 n n C2 N3 IMP doub 259 n n C2 H2 IMP sing 260 n n N3 C4 IMP sing 261 n n # _atom_sites.entry_id 5K4Z _atom_sites.fract_transf_matrix[1][1] 0.011202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 401 1 IMP IMP . C 3 6Q8 A 1 402 1 6Q8 LIG . D 4 HOH A 1 501 171 HOH HOH . D 4 HOH A 2 502 94 HOH HOH . D 4 HOH A 3 503 206 HOH HOH . D 4 HOH A 4 504 126 HOH HOH . D 4 HOH A 5 505 170 HOH HOH . D 4 HOH A 6 506 118 HOH HOH . D 4 HOH A 7 507 105 HOH HOH . D 4 HOH A 8 508 61 HOH HOH . D 4 HOH A 9 509 144 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 85 HOH HOH . D 4 HOH A 12 512 66 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 83 HOH HOH . D 4 HOH A 15 515 154 HOH HOH . D 4 HOH A 16 516 173 HOH HOH . D 4 HOH A 17 517 202 HOH HOH . D 4 HOH A 18 518 10 HOH HOH . D 4 HOH A 19 519 150 HOH HOH . D 4 HOH A 20 520 55 HOH HOH . D 4 HOH A 21 521 193 HOH HOH . D 4 HOH A 22 522 133 HOH HOH . D 4 HOH A 23 523 52 HOH HOH . D 4 HOH A 24 524 44 HOH HOH . D 4 HOH A 25 525 41 HOH HOH . D 4 HOH A 26 526 123 HOH HOH . D 4 HOH A 27 527 178 HOH HOH . D 4 HOH A 28 528 12 HOH HOH . D 4 HOH A 29 529 36 HOH HOH . D 4 HOH A 30 530 27 HOH HOH . D 4 HOH A 31 531 90 HOH HOH . D 4 HOH A 32 532 124 HOH HOH . D 4 HOH A 33 533 155 HOH HOH . D 4 HOH A 34 534 62 HOH HOH . D 4 HOH A 35 535 40 HOH HOH . D 4 HOH A 36 536 17 HOH HOH . D 4 HOH A 37 537 141 HOH HOH . D 4 HOH A 38 538 23 HOH HOH . D 4 HOH A 39 539 181 HOH HOH . D 4 HOH A 40 540 24 HOH HOH . D 4 HOH A 41 541 115 HOH HOH . D 4 HOH A 42 542 43 HOH HOH . D 4 HOH A 43 543 7 HOH HOH . D 4 HOH A 44 544 77 HOH HOH . D 4 HOH A 45 545 143 HOH HOH . D 4 HOH A 46 546 32 HOH HOH . D 4 HOH A 47 547 116 HOH HOH . D 4 HOH A 48 548 153 HOH HOH . D 4 HOH A 49 549 29 HOH HOH . D 4 HOH A 50 550 176 HOH HOH . D 4 HOH A 51 551 174 HOH HOH . D 4 HOH A 52 552 9 HOH HOH . D 4 HOH A 53 553 15 HOH HOH . D 4 HOH A 54 554 95 HOH HOH . D 4 HOH A 55 555 8 HOH HOH . D 4 HOH A 56 556 19 HOH HOH . D 4 HOH A 57 557 161 HOH HOH . D 4 HOH A 58 558 108 HOH HOH . D 4 HOH A 59 559 33 HOH HOH . D 4 HOH A 60 560 4 HOH HOH . D 4 HOH A 61 561 5 HOH HOH . D 4 HOH A 62 562 28 HOH HOH . D 4 HOH A 63 563 14 HOH HOH . D 4 HOH A 64 564 25 HOH HOH . D 4 HOH A 65 565 84 HOH HOH . D 4 HOH A 66 566 63 HOH HOH . D 4 HOH A 67 567 188 HOH HOH . D 4 HOH A 68 568 97 HOH HOH . D 4 HOH A 69 569 197 HOH HOH . D 4 HOH A 70 570 102 HOH HOH . D 4 HOH A 71 571 210 HOH HOH . D 4 HOH A 72 572 203 HOH HOH . D 4 HOH A 73 573 6 HOH HOH . D 4 HOH A 74 574 16 HOH HOH . D 4 HOH A 75 575 81 HOH HOH . D 4 HOH A 76 576 122 HOH HOH . D 4 HOH A 77 577 128 HOH HOH . D 4 HOH A 78 578 164 HOH HOH . D 4 HOH A 79 579 56 HOH HOH . D 4 HOH A 80 580 158 HOH HOH . D 4 HOH A 81 581 74 HOH HOH . D 4 HOH A 82 582 86 HOH HOH . D 4 HOH A 83 583 54 HOH HOH . D 4 HOH A 84 584 180 HOH HOH . D 4 HOH A 85 585 192 HOH HOH . D 4 HOH A 86 586 92 HOH HOH . D 4 HOH A 87 587 50 HOH HOH . D 4 HOH A 88 588 20 HOH HOH . D 4 HOH A 89 589 91 HOH HOH . D 4 HOH A 90 590 88 HOH HOH . D 4 HOH A 91 591 216 HOH HOH . D 4 HOH A 92 592 73 HOH HOH . D 4 HOH A 93 593 121 HOH HOH . D 4 HOH A 94 594 200 HOH HOH . D 4 HOH A 95 595 22 HOH HOH . D 4 HOH A 96 596 42 HOH HOH . D 4 HOH A 97 597 101 HOH HOH . D 4 HOH A 98 598 120 HOH HOH . D 4 HOH A 99 599 127 HOH HOH . D 4 HOH A 100 600 65 HOH HOH . D 4 HOH A 101 601 18 HOH HOH . D 4 HOH A 102 602 148 HOH HOH . D 4 HOH A 103 603 59 HOH HOH . D 4 HOH A 104 604 67 HOH HOH . D 4 HOH A 105 605 147 HOH HOH . D 4 HOH A 106 606 112 HOH HOH . D 4 HOH A 107 607 130 HOH HOH . D 4 HOH A 108 608 114 HOH HOH . D 4 HOH A 109 609 96 HOH HOH . D 4 HOH A 110 610 31 HOH HOH . D 4 HOH A 111 611 138 HOH HOH . D 4 HOH A 112 612 166 HOH HOH . D 4 HOH A 113 613 167 HOH HOH . D 4 HOH A 114 614 78 HOH HOH . D 4 HOH A 115 615 129 HOH HOH . D 4 HOH A 116 616 21 HOH HOH . D 4 HOH A 117 617 103 HOH HOH . D 4 HOH A 118 618 69 HOH HOH . D 4 HOH A 119 619 45 HOH HOH . D 4 HOH A 120 620 87 HOH HOH . D 4 HOH A 121 621 142 HOH HOH . D 4 HOH A 122 622 207 HOH HOH . D 4 HOH A 123 623 47 HOH HOH . D 4 HOH A 124 624 199 HOH HOH . D 4 HOH A 125 625 82 HOH HOH . D 4 HOH A 126 626 79 HOH HOH . D 4 HOH A 127 627 51 HOH HOH . D 4 HOH A 128 628 2 HOH HOH . D 4 HOH A 129 629 64 HOH HOH . D 4 HOH A 130 630 75 HOH HOH . D 4 HOH A 131 631 93 HOH HOH . D 4 HOH A 132 632 26 HOH HOH . D 4 HOH A 133 633 136 HOH HOH . D 4 HOH A 134 634 222 HOH HOH . D 4 HOH A 135 635 46 HOH HOH . D 4 HOH A 136 636 125 HOH HOH . D 4 HOH A 137 637 98 HOH HOH . D 4 HOH A 138 638 117 HOH HOH . D 4 HOH A 139 639 34 HOH HOH . D 4 HOH A 140 640 109 HOH HOH . D 4 HOH A 141 641 198 HOH HOH . D 4 HOH A 142 642 189 HOH HOH . D 4 HOH A 143 643 145 HOH HOH . D 4 HOH A 144 644 70 HOH HOH . D 4 HOH A 145 645 38 HOH HOH . D 4 HOH A 146 646 1 HOH HOH . D 4 HOH A 147 647 132 HOH HOH . D 4 HOH A 148 648 39 HOH HOH . D 4 HOH A 149 649 49 HOH HOH . D 4 HOH A 150 650 99 HOH HOH . D 4 HOH A 151 651 53 HOH HOH . D 4 HOH A 152 652 89 HOH HOH . D 4 HOH A 153 653 57 HOH HOH . D 4 HOH A 154 654 214 HOH HOH . D 4 HOH A 155 655 37 HOH HOH . D 4 HOH A 156 656 71 HOH HOH . D 4 HOH A 157 657 156 HOH HOH . D 4 HOH A 158 658 30 HOH HOH . D 4 HOH A 159 659 184 HOH HOH . D 4 HOH A 160 660 106 HOH HOH . D 4 HOH A 161 661 162 HOH HOH . D 4 HOH A 162 662 211 HOH HOH . D 4 HOH A 163 663 48 HOH HOH . D 4 HOH A 164 664 107 HOH HOH . D 4 HOH A 165 665 3 HOH HOH . D 4 HOH A 166 666 135 HOH HOH . D 4 HOH A 167 667 149 HOH HOH . D 4 HOH A 168 668 100 HOH HOH . D 4 HOH A 169 669 179 HOH HOH . D 4 HOH A 170 670 58 HOH HOH . D 4 HOH A 171 671 163 HOH HOH . D 4 HOH A 172 672 152 HOH HOH . D 4 HOH A 173 673 137 HOH HOH . D 4 HOH A 174 674 169 HOH HOH . D 4 HOH A 175 675 151 HOH HOH . D 4 HOH A 176 676 190 HOH HOH . D 4 HOH A 177 677 157 HOH HOH . D 4 HOH A 178 678 220 HOH HOH . D 4 HOH A 179 679 139 HOH HOH . D 4 HOH A 180 680 182 HOH HOH . D 4 HOH A 181 681 213 HOH HOH . D 4 HOH A 182 682 221 HOH HOH . D 4 HOH A 183 683 104 HOH HOH . D 4 HOH A 184 684 194 HOH HOH . D 4 HOH A 185 685 72 HOH HOH . D 4 HOH A 186 686 201 HOH HOH . D 4 HOH A 187 687 140 HOH HOH . D 4 HOH A 188 688 219 HOH HOH . D 4 HOH A 189 689 209 HOH HOH . D 4 HOH A 190 690 223 HOH HOH . D 4 HOH A 191 691 110 HOH HOH . D 4 HOH A 192 692 191 HOH HOH . D 4 HOH A 193 693 159 HOH HOH . D 4 HOH A 194 694 131 HOH HOH . D 4 HOH A 195 695 185 HOH HOH . D 4 HOH A 196 696 60 HOH HOH . D 4 HOH A 197 697 168 HOH HOH . D 4 HOH A 198 698 172 HOH HOH . D 4 HOH A 199 699 160 HOH HOH . D 4 HOH A 200 700 175 HOH HOH . D 4 HOH A 201 701 204 HOH HOH . D 4 HOH A 202 702 218 HOH HOH . D 4 HOH A 203 703 134 HOH HOH . D 4 HOH A 204 704 208 HOH HOH . D 4 HOH A 205 705 217 HOH HOH . D 4 HOH A 206 706 187 HOH HOH . D 4 HOH A 207 707 68 HOH HOH . D 4 HOH A 208 708 165 HOH HOH . D 4 HOH A 209 709 111 HOH HOH . D 4 HOH A 210 710 35 HOH HOH . D 4 HOH A 211 711 224 HOH HOH . D 4 HOH A 212 712 76 HOH HOH . D 4 HOH A 213 713 80 HOH HOH . D 4 HOH A 214 714 205 HOH HOH . D 4 HOH A 215 715 177 HOH HOH . D 4 HOH A 216 716 183 HOH HOH . D 4 HOH A 217 717 113 HOH HOH . D 4 HOH A 218 718 196 HOH HOH . D 4 HOH A 219 719 119 HOH HOH . D 4 HOH A 220 720 186 HOH HOH . D 4 HOH A 221 721 212 HOH HOH . D 4 HOH A 222 722 215 HOH HOH . D 4 HOH A 223 723 146 HOH HOH . D 4 HOH A 224 724 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 33.26 64.023 -9.984 1 26.71 ? P IMP 401 A 1 HETATM 2 O O1P IMP . . . B 2 33.549 64.204 -11.468 1 29.05 ? O1P IMP 401 A 1 HETATM 3 O O2P IMP . . . B 2 31.775 63.993 -9.759 1 30.19 ? O2P IMP 401 A 1 HETATM 4 O O3P IMP . . . B 2 33.906 62.765 -9.482 1 26.07 ? O3P IMP 401 A 1 HETATM 5 O O5' IMP . . . B 2 33.862 65.252 -9.198 1 27.56 ? O5' IMP 401 A 1 HETATM 6 C C5' IMP . . . B 2 33.365 66.558 -9.392 1 29.03 ? C5' IMP 401 A 1 HETATM 7 C C4' IMP . . . B 2 34.024 67.491 -8.323 1 28.88 ? C4' IMP 401 A 1 HETATM 8 O O4' IMP . . . B 2 35.496 67.503 -8.555 1 26.91 ? O4' IMP 401 A 1 HETATM 9 C C3' IMP . . . B 2 33.683 68.801 -8.42 1 28.57 ? C3' IMP 401 A 1 HETATM 10 O O3' IMP . . . B 2 32.422 69.13 -7.814 1 26.26 ? O3' IMP 401 A 1 HETATM 11 C C2' IMP . . . B 2 34.943 69.595 -7.661 1 31.18 ? C2' IMP 401 A 1 HETATM 12 O O2' IMP . . . B 2 34.827 69.461 -6.215 1 30.07 ? O2' IMP 401 A 1 HETATM 13 C C1' IMP . . . B 2 35.989 68.975 -8 1 31.33 ? C1' IMP 401 A 1 HETATM 14 N N9 IMP . . . B 2 36.764 69.563 -9.079 1 31.58 ? N9 IMP 401 A 1 HETATM 15 C C8 IMP . . . B 2 36.356 70.327 -10.104 1 30.42 ? C8 IMP 401 A 1 HETATM 16 N N7 IMP . . . B 2 37.432 70.636 -10.869 1 28.34 ? N7 IMP 401 A 1 HETATM 17 C C5 IMP . . . B 2 38.529 70.043 -10.344 1 30.48 ? C5 IMP 401 A 1 HETATM 18 C C6 IMP . . . B 2 39.998 70.002 -10.736 1 32.15 ? C6 IMP 401 A 1 HETATM 19 O O6 IMP . . . B 2 40.407 70.56 -11.699 1 30.98 ? O6 IMP 401 A 1 HETATM 20 N N1 IMP . . . B 2 40.904 69.276 -9.939 1 32.05 ? N1 IMP 401 A 1 HETATM 21 C C2 IMP . . . B 2 40.439 68.602 -8.78 1 30.39 ? C2 IMP 401 A 1 HETATM 22 N N3 IMP . . . B 2 39.031 68.617 -8.402 1 29.15 ? N3 IMP 401 A 1 HETATM 23 C C4 IMP . . . B 2 38.095 69.369 -9.216 1 31.29 ? C4 IMP 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #