data_5K51
#
_model_server_result.job_id            7DFoyTMNNRgZUyY1mJBtCQ 
_model_server_result.datetime_utc      '2024-12-25 18:07:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k51 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5K51 
#
_exptl.entry_id    5K51 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.224 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-(6-oxidanylidene-3~{H}-purin-9-yl)pentylphosphonic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.16 
_cell.angle_gamma         90 
_cell.entry_id            5K51 
_cell.length_a            57.093 
_cell.length_b            88.633 
_cell.length_c            94.664 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K51 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C10 H15 N4 O4 P' 
_chem_comp.formula_weight    286.224 
_chem_comp.id                6QD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-(6-oxidanylidene-3~{H}-purin-9-yl)pentylphosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     9-[5-(phosphonoheptyl]hypoxanthine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O17 P16 6QD doub 1 n n 
P16 O18 6QD sing 2 n n 
P16 O19 6QD sing 3 n n 
P16 C15 6QD sing 4 n n 
N08 C09 6QD doub 5 n y 
N08 C07 6QD sing 6 n y 
C09 N10 6QD sing 7 n y 
C15 C14 6QD sing 8 n n 
O01 C02 6QD doub 9 n n 
C07 C02 6QD sing 10 n n 
C07 C06 6QD doub 11 n y 
N10 C11 6QD sing 12 n n 
N10 C06 6QD sing 13 n y 
C14 C13 6QD sing 14 n n 
C11 C12 6QD sing 15 n n 
C12 C13 6QD sing 16 n n 
C02 N03 6QD sing 17 n n 
C06 N05 6QD sing 18 n n 
N03 C04 6QD doub 19 n n 
N05 C04 6QD sing 20 n n 
C15 H1 6QD sing 21 n n 
C15 H2 6QD sing 22 n n 
C04 H3 6QD sing 23 n n 
N05 H4 6QD sing 24 n n 
C09 H5 6QD sing 25 n n 
C11 H6 6QD sing 26 n n 
C11 H7 6QD sing 27 n n 
C12 H8 6QD sing 28 n n 
C12 H9 6QD sing 29 n n 
C13 H10 6QD sing 30 n n 
C13 H11 6QD sing 31 n n 
C14 H12 6QD sing 32 n n 
C14 H13 6QD sing 33 n n 
O18 H14 6QD sing 34 n n 
O19 H15 6QD sing 35 n n 
#
_atom_sites.entry_id                     5K51 
_atom_sites.fract_transf_matrix[1][1]    0.017515 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005409 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6QD A 1 301 1 6QD 580 . 
F 2 6QD B 1 301 2 6QD 580 . 
G 2 6QD C 1 301 3 6QD 580 . 
H 2 6QD D 1 301 4 6QD 580 . 
I 3 HOH A 1 401 77 HOH HOH . 
I 3 HOH A 2 402 11 HOH HOH . 
I 3 HOH A 3 403 76 HOH HOH . 
I 3 HOH A 4 404 12 HOH HOH . 
I 3 HOH A 5 405 66 HOH HOH . 
I 3 HOH A 6 406 38 HOH HOH . 
I 3 HOH A 7 407 78 HOH HOH . 
J 3 HOH B 1 401 8 HOH HOH . 
J 3 HOH B 2 402 68 HOH HOH . 
J 3 HOH B 3 403 14 HOH HOH . 
J 3 HOH B 4 404 2 HOH HOH . 
J 3 HOH B 5 405 15 HOH HOH . 
J 3 HOH B 6 406 55 HOH HOH . 
J 3 HOH B 7 407 75 HOH HOH . 
J 3 HOH B 8 408 47 HOH HOH . 
J 3 HOH B 9 409 31 HOH HOH . 
J 3 HOH B 10 410 28 HOH HOH . 
J 3 HOH B 11 411 52 HOH HOH . 
J 3 HOH B 12 412 46 HOH HOH . 
J 3 HOH B 13 413 58 HOH HOH . 
J 3 HOH B 14 414 60 HOH HOH . 
J 3 HOH B 15 415 5 HOH HOH . 
K 3 HOH C 1 401 57 HOH HOH . 
K 3 HOH C 2 402 74 HOH HOH . 
K 3 HOH C 3 403 42 HOH HOH . 
K 3 HOH C 4 404 50 HOH HOH . 
K 3 HOH C 5 405 45 HOH HOH . 
K 3 HOH C 6 406 81 HOH HOH . 
K 3 HOH C 7 407 9 HOH HOH . 
K 3 HOH C 8 408 30 HOH HOH . 
K 3 HOH C 9 409 80 HOH HOH . 
K 3 HOH C 10 410 69 HOH HOH . 
L 3 HOH D 1 401 70 HOH HOH . 
L 3 HOH D 2 402 53 HOH HOH . 
L 3 HOH D 3 403 79 HOH HOH . 
L 3 HOH D 4 404 71 HOH HOH . 
L 3 HOH D 5 405 67 HOH HOH . 
L 3 HOH D 6 406 63 HOH HOH . 
L 3 HOH D 7 407 39 HOH HOH . 
L 3 HOH D 8 408 73 HOH HOH . 
L 3 HOH D 9 409 59 HOH HOH . 
L 3 HOH D 10 410 34 HOH HOH . 
L 3 HOH D 11 411 16 HOH HOH . 
L 3 HOH D 12 412 41 HOH HOH . 
L 3 HOH D 13 413 64 HOH HOH . 
L 3 HOH D 14 414 54 HOH HOH . 
L 3 HOH D 15 415 6 HOH HOH . 
L 3 HOH D 16 416 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 6QD . . . E 2 -24.811 5.743 -16.215 1 43.56 ? C15 6QD 301 A 1 
HETATM 2 O O01 6QD . . . E 2 -19.571 12.913 -15.804 1 37.43 ? O01 6QD 301 A 1 
HETATM 3 C C02 6QD . . . E 2 -19.707 11.915 -15.057 1 37.81 ? C02 6QD 301 A 1 
HETATM 4 N N03 6QD . . . E 2 -19.433 12.025 -13.696 1 37.99 ? N03 6QD 301 A 1 
HETATM 5 C C04 6QD . . . E 2 -19.589 10.893 -12.852 1 37.49 ? C04 6QD 301 A 1 
HETATM 6 N N05 6QD . . . E 2 -20.031 9.628 -13.406 1 37.58 ? N05 6QD 301 A 1 
HETATM 7 C C06 6QD . . . E 2 -20.311 9.516 -14.798 1 38.14 ? C06 6QD 301 A 1 
HETATM 8 C C07 6QD . . . E 2 -20.162 10.611 -15.623 1 38.19 ? C07 6QD 301 A 1 
HETATM 9 N N08 6QD . . . E 2 -20.495 10.213 -16.873 1 38.62 ? N08 6QD 301 A 1 
HETATM 10 C C09 6QD . . . E 2 -20.83 8.949 -16.833 1 38.64 ? C09 6QD 301 A 1 
HETATM 11 N N10 6QD . . . E 2 -20.727 8.507 -15.591 1 38.9 ? N10 6QD 301 A 1 
HETATM 12 C C11 6QD . . . E 2 -21.009 7.171 -15.153 1 40.16 ? C11 6QD 301 A 1 
HETATM 13 C C12 6QD . . . E 2 -22.537 6.907 -15.151 1 40.4 ? C12 6QD 301 A 1 
HETATM 14 C C13 6QD . . . E 2 -22.878 5.562 -14.533 1 41.11 ? C13 6QD 301 A 1 
HETATM 15 C C14 6QD . . . E 2 -24.152 4.881 -15.185 1 42.29 ? C14 6QD 301 A 1 
HETATM 16 P P16 6QD . . . E 2 -25.744 4.759 -17.408 1 45.21 ? P16 6QD 301 A 1 
HETATM 17 O O17 6QD . . . E 2 -25.414 5.232 -18.808 1 44.84 -1 O17 6QD 301 A 1 
HETATM 18 O O18 6QD . . . E 2 -25.382 3.321 -17.268 1 45.72 -1 O18 6QD 301 A 1 
HETATM 19 O O19 6QD . . . E 2 -27.231 4.934 -17.152 1 45.43 ? O19 6QD 301 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#