data_5K52 # _model_server_result.job_id hXpVmHWbq7ZNdt99k5q9IQ _model_server_result.datetime_utc '2024-10-10 04:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 5K52 # _exptl.entry_id 5K52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description octadecanal _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K52 _cell.length_a 135.658 _cell.length_b 135.658 _cell.length_c 71.795 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,H 2 1 C,F,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C18 H36 O' _chem_comp.formula_weight 268.478 _chem_comp.id OCD _chem_comp.mon_nstd_flag . _chem_comp.name octadecanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 OCD doub 237 n n C1 C2 OCD sing 238 n n C2 C3 OCD sing 239 n n C3 C4 OCD sing 240 n n C4 C5 OCD sing 241 n n C5 C6 OCD sing 242 n n C6 C7 OCD sing 243 n n C14 C13 OCD sing 244 n n C14 C15 OCD sing 245 n n C7 C8 OCD sing 246 n n C8 C9 OCD sing 247 n n C16 C15 OCD sing 248 n n C16 C17 OCD sing 249 n n C13 C12 OCD sing 250 n n C12 C11 OCD sing 251 n n C18 C17 OCD sing 252 n n C9 C10 OCD sing 253 n n C11 C10 OCD sing 254 n n C1 H1 OCD sing 255 n n C2 H2 OCD sing 256 n n C2 H3 OCD sing 257 n n C3 H4 OCD sing 258 n n C3 H5 OCD sing 259 n n C4 H6 OCD sing 260 n n C4 H7 OCD sing 261 n n C5 H8 OCD sing 262 n n C5 H9 OCD sing 263 n n C6 H10 OCD sing 264 n n C6 H11 OCD sing 265 n n C7 H12 OCD sing 266 n n C7 H13 OCD sing 267 n n C8 H14 OCD sing 268 n n C8 H15 OCD sing 269 n n C9 H16 OCD sing 270 n n C9 H17 OCD sing 271 n n C10 H18 OCD sing 272 n n C10 H19 OCD sing 273 n n C11 H20 OCD sing 274 n n C11 H21 OCD sing 275 n n C12 H22 OCD sing 276 n n C12 H23 OCD sing 277 n n C13 H24 OCD sing 278 n n C13 H25 OCD sing 279 n n C14 H26 OCD sing 280 n n C14 H27 OCD sing 281 n n C15 H28 OCD sing 282 n n C15 H29 OCD sing 283 n n C16 H30 OCD sing 284 n n C16 H31 OCD sing 285 n n C17 H32 OCD sing 286 n n C17 H33 OCD sing 287 n n C18 H34 OCD sing 288 n n C18 H35 OCD sing 289 n n C18 H36 OCD sing 290 n n # _atom_sites.entry_id 5K52 _atom_sites.fract_transf_matrix[1][1] 0.007371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 OCD A 1 500 500 OCD OCT . F 2 OCD C 1 500 500 OCD OCT . G 3 HOH A 1 601 22 HOH HOH . G 3 HOH A 2 602 91 HOH HOH . G 3 HOH A 3 603 266 HOH HOH . G 3 HOH A 4 604 32 HOH HOH . G 3 HOH A 5 605 281 HOH HOH . G 3 HOH A 6 606 257 HOH HOH . G 3 HOH A 7 607 76 HOH HOH . G 3 HOH A 8 608 105 HOH HOH . G 3 HOH A 9 609 294 HOH HOH . G 3 HOH A 10 610 278 HOH HOH . G 3 HOH A 11 611 87 HOH HOH . G 3 HOH A 12 612 20 HOH HOH . G 3 HOH A 13 613 151 HOH HOH . G 3 HOH A 14 614 297 HOH HOH . G 3 HOH A 15 615 35 HOH HOH . G 3 HOH A 16 616 25 HOH HOH . G 3 HOH A 17 617 17 HOH HOH . G 3 HOH A 18 618 60 HOH HOH . G 3 HOH A 19 619 81 HOH HOH . G 3 HOH A 20 620 52 HOH HOH . G 3 HOH A 21 621 23 HOH HOH . G 3 HOH A 22 622 84 HOH HOH . G 3 HOH A 23 623 50 HOH HOH . G 3 HOH A 24 624 150 HOH HOH . G 3 HOH A 25 625 270 HOH HOH . G 3 HOH A 26 626 261 HOH HOH . G 3 HOH A 27 627 254 HOH HOH . G 3 HOH A 28 628 6 HOH HOH . G 3 HOH A 29 629 241 HOH HOH . G 3 HOH A 30 630 140 HOH HOH . G 3 HOH A 31 631 255 HOH HOH . G 3 HOH A 32 632 279 HOH HOH . G 3 HOH A 33 633 282 HOH HOH . G 3 HOH A 34 634 130 HOH HOH . G 3 HOH A 35 635 252 HOH HOH . H 3 HOH B 1 301 34 HOH HOH . H 3 HOH B 2 302 240 HOH HOH . H 3 HOH B 3 303 2 HOH HOH . H 3 HOH B 4 304 268 HOH HOH . H 3 HOH B 5 305 63 HOH HOH . H 3 HOH B 6 306 118 HOH HOH . H 3 HOH B 7 307 4 HOH HOH . H 3 HOH B 8 308 99 HOH HOH . H 3 HOH B 9 309 65 HOH HOH . H 3 HOH B 10 310 275 HOH HOH . H 3 HOH B 11 311 77 HOH HOH . H 3 HOH B 12 312 38 HOH HOH . H 3 HOH B 13 313 33 HOH HOH . H 3 HOH B 14 314 16 HOH HOH . H 3 HOH B 15 315 93 HOH HOH . H 3 HOH B 16 316 101 HOH HOH . H 3 HOH B 17 317 13 HOH HOH . H 3 HOH B 18 318 260 HOH HOH . H 3 HOH B 19 319 71 HOH HOH . H 3 HOH B 20 320 41 HOH HOH . H 3 HOH B 21 321 259 HOH HOH . H 3 HOH B 22 322 45 HOH HOH . H 3 HOH B 23 323 69 HOH HOH . H 3 HOH B 24 324 248 HOH HOH . H 3 HOH B 25 325 284 HOH HOH . H 3 HOH B 26 326 274 HOH HOH . H 3 HOH B 27 327 148 HOH HOH . I 3 HOH C 1 601 264 HOH HOH . I 3 HOH C 2 602 1 HOH HOH . I 3 HOH C 3 603 295 HOH HOH . I 3 HOH C 4 604 31 HOH HOH . I 3 HOH C 5 605 95 HOH HOH . I 3 HOH C 6 606 26 HOH HOH . I 3 HOH C 7 607 19 HOH HOH . I 3 HOH C 8 608 251 HOH HOH . I 3 HOH C 9 609 115 HOH HOH . I 3 HOH C 10 610 27 HOH HOH . I 3 HOH C 11 611 58 HOH HOH . I 3 HOH C 12 612 88 HOH HOH . I 3 HOH C 13 613 47 HOH HOH . I 3 HOH C 14 614 55 HOH HOH . I 3 HOH C 15 615 62 HOH HOH . I 3 HOH C 16 616 57 HOH HOH . I 3 HOH C 17 617 9 HOH HOH . I 3 HOH C 18 618 128 HOH HOH . I 3 HOH C 19 619 117 HOH HOH . I 3 HOH C 20 620 296 HOH HOH . I 3 HOH C 21 621 49 HOH HOH . I 3 HOH C 22 622 286 HOH HOH . I 3 HOH C 23 623 7 HOH HOH . I 3 HOH C 24 624 121 HOH HOH . I 3 HOH C 25 625 265 HOH HOH . I 3 HOH C 26 626 249 HOH HOH . J 3 HOH D 1 301 262 HOH HOH . J 3 HOH D 2 302 280 HOH HOH . J 3 HOH D 3 303 3 HOH HOH . J 3 HOH D 4 304 46 HOH HOH . J 3 HOH D 5 305 10 HOH HOH . J 3 HOH D 6 306 276 HOH HOH . J 3 HOH D 7 307 30 HOH HOH . J 3 HOH D 8 308 145 HOH HOH . J 3 HOH D 9 309 271 HOH HOH . J 3 HOH D 10 310 269 HOH HOH . J 3 HOH D 11 311 108 HOH HOH . J 3 HOH D 12 312 48 HOH HOH . J 3 HOH D 13 313 273 HOH HOH . J 3 HOH D 14 314 112 HOH HOH . J 3 HOH D 15 315 40 HOH HOH . J 3 HOH D 16 316 21 HOH HOH . J 3 HOH D 17 317 104 HOH HOH . J 3 HOH D 18 318 28 HOH HOH . J 3 HOH D 19 319 291 HOH HOH . J 3 HOH D 20 320 39 HOH HOH . J 3 HOH D 21 321 129 HOH HOH . J 3 HOH D 22 322 102 HOH HOH . J 3 HOH D 23 323 283 HOH HOH . J 3 HOH D 24 324 75 HOH HOH . J 3 HOH D 25 325 263 HOH HOH . J 3 HOH D 26 326 138 HOH HOH . J 3 HOH D 27 327 277 HOH HOH . J 3 HOH D 28 328 290 HOH HOH . J 3 HOH D 29 329 258 HOH HOH . J 3 HOH D 30 330 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCD . . . E 2 12.35 81.989 47.43 1 81.94 ? C1 OCD 500 A 1 HETATM 2 O O1 OCD . . . E 2 12.196 82.377 46.278 1 88.03 ? O1 OCD 500 A 1 HETATM 3 C C2 OCD . . . E 2 12.544 83.005 48.527 1 81.31 ? C2 OCD 500 A 1 HETATM 4 C C3 OCD . . . E 2 12.53 82.381 49.929 1 81.34 ? C3 OCD 500 A 1 HETATM 5 C C4 OCD . . . E 2 13.869 81.832 50.464 1 77.06 ? C4 OCD 500 A 1 HETATM 6 C C5 OCD . . . E 2 14.669 82.89 51.278 1 73.99 ? C5 OCD 500 A 1 HETATM 7 C C6 OCD . . . E 2 15.934 82.227 51.86 1 67.46 ? C6 OCD 500 A 1 HETATM 8 C C7 OCD . . . E 2 16.955 83.235 52.486 1 78.44 ? C7 OCD 500 A 1 HETATM 9 C C8 OCD . . . E 2 18.201 82.371 52.891 1 83.29 ? C8 OCD 500 A 1 HETATM 10 C C9 OCD . . . E 2 19.298 83.024 53.78 1 79.51 ? C9 OCD 500 A 1 HETATM 11 C C10 OCD . . . E 2 19.938 81.973 54.748 1 81.15 ? C10 OCD 500 A 1 HETATM 12 C C11 OCD . . . E 2 20.807 80.84 54.084 1 80.36 ? C11 OCD 500 A 1 HETATM 13 C C12 OCD . . . E 2 19.984 79.627 53.515 1 82.9 ? C12 OCD 500 A 1 HETATM 14 C C13 OCD . . . E 2 20.823 78.358 53.103 1 85.36 ? C13 OCD 500 A 1 HETATM 15 C C14 OCD . . . E 2 19.971 77.206 52.436 1 77.53 ? C14 OCD 500 A 1 HETATM 16 C C15 OCD . . . E 2 19.796 75.959 53.382 1 83.62 ? C15 OCD 500 A 1 HETATM 17 C C16 OCD . . . E 2 18.716 74.898 52.973 1 75.18 ? C16 OCD 500 A 1 HETATM 18 C C17 OCD . . . E 2 18.232 74.141 54.204 1 66.85 ? C17 OCD 500 A 1 HETATM 19 C C18 OCD . . . E 2 17.633 72.837 53.693 1 65.92 ? C18 OCD 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #