data_5K53 # _model_server_result.job_id a0x5vzPruYhDp4d6UhFHgA _model_server_result.datetime_utc '2024-12-04 10:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 5K53 # _exptl.entry_id 5K53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K53 _cell.length_a 55.012 _cell.length_b 78.265 _cell.length_c 108.861 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 64 A GLU 32 1_555 C FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc2 A OE1 GLU 92 A GLU 60 1_555 C FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A OE2 GLU 92 A GLU 60 1_555 D FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc4 A ND1 HIS 95 A HIS 63 1_555 C FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 A OE1 GLU 147 A GLU 115 1_555 D FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A OE2 GLU 147 A GLU 115 1_555 D FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 A OE1 GLU 176 A GLU 144 1_555 C FE FE . A FE 500 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 A OE2 GLU 176 A GLU 144 1_555 C FE FE . A FE 500 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 A OE1 GLU 176 A GLU 144 1_555 D FE FE . A FE 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc10 A ND1 HIS 179 A HIS 147 1_555 D FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 D FE FE . A FE 501 1_555 E O1 STE . A STE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc12 B OE1 GLU 64 B GLU 32 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc13 B OE2 GLU 92 B GLU 60 1_555 F FE FE . B FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc14 B OE1 GLU 92 B GLU 60 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc15 B ND1 HIS 95 B HIS 63 1_555 G FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc16 B OE1 GLU 147 B GLU 115 1_555 F FE FE . B FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc17 B OE2 GLU 147 B GLU 115 1_555 F FE FE . B FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc18 B OE2 GLU 176 B GLU 144 1_555 F FE FE . B FE 500 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc19 B OE1 GLU 176 B GLU 144 1_555 G FE FE . B FE 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc20 B OE2 GLU 176 B GLU 144 1_555 G FE FE . B FE 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc21 B ND1 HIS 179 B HIS 147 1_555 F FE FE . B FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc22 F FE FE . B FE 500 1_555 H O1 STE . B STE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K53 _atom_sites.fract_transf_matrix[1][1] 0.018178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 500 500 FE FE . D 2 FE A 1 501 501 FE FE . E 3 STE A 1 502 502 STE OCT . F 2 FE B 1 500 500 FE FE . G 2 FE B 1 501 501 FE FE . H 3 STE B 1 502 502 STE OCT . I 4 HOH A 1 601 98 HOH HOH . I 4 HOH A 2 602 45 HOH HOH . I 4 HOH A 3 603 3 HOH HOH . I 4 HOH A 4 604 41 HOH HOH . I 4 HOH A 5 605 58 HOH HOH . I 4 HOH A 6 606 11 HOH HOH . I 4 HOH A 7 607 82 HOH HOH . I 4 HOH A 8 608 2 HOH HOH . I 4 HOH A 9 609 59 HOH HOH . I 4 HOH A 10 610 64 HOH HOH . I 4 HOH A 11 611 48 HOH HOH . I 4 HOH A 12 612 24 HOH HOH . I 4 HOH A 13 613 79 HOH HOH . I 4 HOH A 14 614 28 HOH HOH . I 4 HOH A 15 615 39 HOH HOH . I 4 HOH A 16 616 18 HOH HOH . I 4 HOH A 17 617 61 HOH HOH . I 4 HOH A 18 618 43 HOH HOH . I 4 HOH A 19 619 42 HOH HOH . I 4 HOH A 20 620 40 HOH HOH . I 4 HOH A 21 621 71 HOH HOH . I 4 HOH A 22 622 27 HOH HOH . I 4 HOH A 23 623 13 HOH HOH . I 4 HOH A 24 624 35 HOH HOH . I 4 HOH A 25 625 49 HOH HOH . I 4 HOH A 26 626 72 HOH HOH . I 4 HOH A 27 627 12 HOH HOH . I 4 HOH A 28 628 63 HOH HOH . I 4 HOH A 29 629 38 HOH HOH . I 4 HOH A 30 630 4 HOH HOH . I 4 HOH A 31 631 46 HOH HOH . I 4 HOH A 32 632 5 HOH HOH . I 4 HOH A 33 633 22 HOH HOH . I 4 HOH A 34 634 78 HOH HOH . I 4 HOH A 35 635 17 HOH HOH . I 4 HOH A 36 636 74 HOH HOH . I 4 HOH A 37 637 37 HOH HOH . I 4 HOH A 38 638 14 HOH HOH . I 4 HOH A 39 639 80 HOH HOH . I 4 HOH A 40 640 65 HOH HOH . I 4 HOH A 41 641 75 HOH HOH . I 4 HOH A 42 642 1 HOH HOH . I 4 HOH A 43 643 29 HOH HOH . I 4 HOH A 44 644 44 HOH HOH . I 4 HOH A 45 645 62 HOH HOH . I 4 HOH A 46 646 15 HOH HOH . I 4 HOH A 47 647 16 HOH HOH . I 4 HOH A 48 648 77 HOH HOH . I 4 HOH A 49 649 81 HOH HOH . I 4 HOH A 50 650 76 HOH HOH . I 4 HOH A 51 651 55 HOH HOH . I 4 HOH A 52 652 36 HOH HOH . I 4 HOH A 53 653 60 HOH HOH . I 4 HOH A 54 654 90 HOH HOH . J 4 HOH B 1 601 68 HOH HOH . J 4 HOH B 2 602 85 HOH HOH . J 4 HOH B 3 603 51 HOH HOH . J 4 HOH B 4 604 54 HOH HOH . J 4 HOH B 5 605 10 HOH HOH . J 4 HOH B 6 606 52 HOH HOH . J 4 HOH B 7 607 21 HOH HOH . J 4 HOH B 8 608 95 HOH HOH . J 4 HOH B 9 609 26 HOH HOH . J 4 HOH B 10 610 94 HOH HOH . J 4 HOH B 11 611 84 HOH HOH . J 4 HOH B 12 612 34 HOH HOH . J 4 HOH B 13 613 23 HOH HOH . J 4 HOH B 14 614 93 HOH HOH . J 4 HOH B 15 615 19 HOH HOH . J 4 HOH B 16 616 57 HOH HOH . J 4 HOH B 17 617 100 HOH HOH . J 4 HOH B 18 618 31 HOH HOH . J 4 HOH B 19 619 86 HOH HOH . J 4 HOH B 20 620 70 HOH HOH . J 4 HOH B 21 621 99 HOH HOH . J 4 HOH B 22 622 87 HOH HOH . J 4 HOH B 23 623 32 HOH HOH . J 4 HOH B 24 624 89 HOH HOH . J 4 HOH B 25 625 88 HOH HOH . J 4 HOH B 26 626 97 HOH HOH . J 4 HOH B 27 627 8 HOH HOH . J 4 HOH B 28 628 9 HOH HOH . J 4 HOH B 29 629 83 HOH HOH . J 4 HOH B 30 630 53 HOH HOH . J 4 HOH B 31 631 20 HOH HOH . J 4 HOH B 32 632 91 HOH HOH . J 4 HOH B 33 633 25 HOH HOH . J 4 HOH B 34 634 56 HOH HOH . J 4 HOH B 35 635 103 HOH HOH . J 4 HOH B 36 636 30 HOH HOH . J 4 HOH B 37 637 67 HOH HOH . J 4 HOH B 38 638 105 HOH HOH . J 4 HOH B 39 639 69 HOH HOH . J 4 HOH B 40 640 66 HOH HOH . J 4 HOH B 41 641 50 HOH HOH . J 4 HOH B 42 642 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -47.466 _atom_site.Cartn_y 2.689 _atom_site.Cartn_z 118.047 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #