data_5K55 # _model_server_result.job_id G8OplDAvSCH4GiDg04jr-g _model_server_result.datetime_utc '2024-10-20 19:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5K55 # _exptl.entry_id 5K55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K55 _cell.length_a 72.317 _cell.length_b 72.317 _cell.length_c 231.07 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 72.317 72.317 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 72.317 72.317 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5K55 _atom_sites.fract_transf_matrix[1][1] 0.013828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 1 F6P F6P . C 3 HOH A 1 501 60 HOH HOH . C 3 HOH A 2 502 55 HOH HOH . C 3 HOH A 3 503 17 HOH HOH . C 3 HOH A 4 504 64 HOH HOH . C 3 HOH A 5 505 14 HOH HOH . C 3 HOH A 6 506 8 HOH HOH . C 3 HOH A 7 507 19 HOH HOH . C 3 HOH A 8 508 40 HOH HOH . C 3 HOH A 9 509 24 HOH HOH . C 3 HOH A 10 510 53 HOH HOH . C 3 HOH A 11 511 54 HOH HOH . C 3 HOH A 12 512 37 HOH HOH . C 3 HOH A 13 513 50 HOH HOH . C 3 HOH A 14 514 16 HOH HOH . C 3 HOH A 15 515 3 HOH HOH . C 3 HOH A 16 516 15 HOH HOH . C 3 HOH A 17 517 1 HOH HOH . C 3 HOH A 18 518 22 HOH HOH . C 3 HOH A 19 519 26 HOH HOH . C 3 HOH A 20 520 41 HOH HOH . C 3 HOH A 21 521 49 HOH HOH . C 3 HOH A 22 522 63 HOH HOH . C 3 HOH A 23 523 21 HOH HOH . C 3 HOH A 24 524 31 HOH HOH . C 3 HOH A 25 525 5 HOH HOH . C 3 HOH A 26 526 7 HOH HOH . C 3 HOH A 27 527 51 HOH HOH . C 3 HOH A 28 528 18 HOH HOH . C 3 HOH A 29 529 27 HOH HOH . C 3 HOH A 30 530 29 HOH HOH . C 3 HOH A 31 531 25 HOH HOH . C 3 HOH A 32 532 48 HOH HOH . C 3 HOH A 33 533 2 HOH HOH . C 3 HOH A 34 534 12 HOH HOH . C 3 HOH A 35 535 11 HOH HOH . C 3 HOH A 36 536 43 HOH HOH . C 3 HOH A 37 537 59 HOH HOH . C 3 HOH A 38 538 45 HOH HOH . C 3 HOH A 39 539 52 HOH HOH . C 3 HOH A 40 540 30 HOH HOH . C 3 HOH A 41 541 28 HOH HOH . C 3 HOH A 42 542 47 HOH HOH . C 3 HOH A 43 543 9 HOH HOH . C 3 HOH A 44 544 39 HOH HOH . C 3 HOH A 45 545 56 HOH HOH . C 3 HOH A 46 546 10 HOH HOH . C 3 HOH A 47 547 35 HOH HOH . C 3 HOH A 48 548 36 HOH HOH . C 3 HOH A 49 549 46 HOH HOH . C 3 HOH A 50 550 34 HOH HOH . C 3 HOH A 51 551 32 HOH HOH . C 3 HOH A 52 552 61 HOH HOH . C 3 HOH A 53 553 44 HOH HOH . C 3 HOH A 54 554 42 HOH HOH . C 3 HOH A 55 555 33 HOH HOH . C 3 HOH A 56 556 62 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 23 HOH HOH . C 3 HOH A 59 559 13 HOH HOH . C 3 HOH A 60 560 4 HOH HOH . C 3 HOH A 61 561 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 17.394 18.505 14.377 1 63.51 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . B 2 17.744 17.215 13.941 1 57.82 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . B 2 17.591 16.991 12.441 1 47.81 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . B 2 18.905 16.935 11.885 1 42.74 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . B 2 16.796 18.027 11.633 1 43.37 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . B 2 17.624 18.965 11.023 1 29.66 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . B 2 16.095 17.193 10.584 1 39.56 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . B 2 14.908 17.826 10.186 1 36.3 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . B 2 15.911 15.854 11.255 1 39.38 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . B 2 16.96 15.721 12.195 1 36.64 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . B 2 15.914 14.683 10.278 1 41.03 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . B 2 15.846 13.49 11.01 1 38.96 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . B 2 15.51 12.1 10.251 1 27.39 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . B 2 14.619 12.321 9.04 1 31.33 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . B 2 14.78 11.251 11.321 1 28.82 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . B 2 16.871 11.543 9.787 1 35.07 ? O3P F6P 401 A 1 HETATM 17 H HO1 F6P . . . B 2 17.106 19.042 13.609 1 76.21 ? HO1 F6P 401 A 1 HETATM 18 H H11 F6P . . . B 2 18.78 17.02 14.22 1 69.38 ? H11 F6P 401 A 1 HETATM 19 H H12 F6P . . . B 2 17.127 16.488 14.469 1 69.38 ? H12 F6P 401 A 1 HETATM 20 H HO2 F6P . . . B 2 18.97 17.564 11.137 1 51.29 ? HO2 F6P 401 A 1 HETATM 21 H H3 F6P . . . B 2 16.06 18.511 12.274 1 52.05 ? H3 F6P 401 A 1 HETATM 22 H HO3 F6P . . . B 2 17.562 18.87 10.049 1 35.6 ? HO3 F6P 401 A 1 HETATM 23 H H4 F6P . . . B 2 16.759 17.071 9.729 1 47.48 ? H4 F6P 401 A 1 HETATM 24 H HO4 F6P . . . B 2 14.142 17.263 10.423 1 43.57 ? HO4 F6P 401 A 1 HETATM 25 H H5 F6P . . . B 2 14.954 15.861 11.777 1 47.25 ? H5 F6P 401 A 1 HETATM 26 H H61 F6P . . . B 2 16.824 14.7 9.679 1 49.23 ? H61 F6P 401 A 1 HETATM 27 H H62 F6P . . . B 2 15.059 14.756 9.606 1 49.23 ? H62 F6P 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #