data_5K56 # _model_server_result.job_id sJWRCe7xAMm2g7jbBGgY5Q _model_server_result.datetime_utc '2024-10-10 00:25:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5K56 # _exptl.entry_id 5K56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K56 _cell.length_a 72.581 _cell.length_b 72.581 _cell.length_c 232.442 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -72.581 -72.581 0 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -72.581 -72.581 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 83 n n P1 O2P FBP sing 84 n n P1 O3P FBP sing 85 n n P1 O1 FBP sing 86 n n O2P HOP2 FBP sing 87 n n O3P HOP3 FBP sing 88 n n O1 C1 FBP sing 89 n n C1 C2 FBP sing 90 n n C1 H11 FBP sing 91 n n C1 H12 FBP sing 92 n n C2 O2 FBP sing 93 n n C2 C3 FBP sing 94 n n C2 O5 FBP sing 95 n n O2 HO2 FBP sing 96 n n C3 O3 FBP sing 97 n n C3 C4 FBP sing 98 n n C3 H3 FBP sing 99 n n O3 HO3 FBP sing 100 n n C4 O4 FBP sing 101 n n C4 C5 FBP sing 102 n n C4 H4 FBP sing 103 n n O4 HO4 FBP sing 104 n n C5 O5 FBP sing 105 n n C5 C6 FBP sing 106 n n C5 H5 FBP sing 107 n n C6 O6 FBP sing 108 n n C6 H61 FBP sing 109 n n C6 H62 FBP sing 110 n n O6 P2 FBP sing 111 n n P2 O4P FBP doub 112 n n P2 O5P FBP sing 113 n n P2 O6P FBP sing 114 n n O5P HOP5 FBP sing 115 n n O6P HOP6 FBP sing 116 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5K56 _atom_sites.fract_transf_matrix[1][1] 0.013778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FBP A 1 401 1 FBP FBP . C 3 HOH A 1 501 32 HOH HOH . C 3 HOH A 2 502 23 HOH HOH . C 3 HOH A 3 503 31 HOH HOH . C 3 HOH A 4 504 1 HOH HOH . C 3 HOH A 5 505 11 HOH HOH . C 3 HOH A 6 506 33 HOH HOH . C 3 HOH A 7 507 18 HOH HOH . C 3 HOH A 8 508 25 HOH HOH . C 3 HOH A 9 509 19 HOH HOH . C 3 HOH A 10 510 6 HOH HOH . C 3 HOH A 11 511 14 HOH HOH . C 3 HOH A 12 512 30 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 27 HOH HOH . C 3 HOH A 15 515 2 HOH HOH . C 3 HOH A 16 516 5 HOH HOH . C 3 HOH A 17 517 7 HOH HOH . C 3 HOH A 18 518 4 HOH HOH . C 3 HOH A 19 519 16 HOH HOH . C 3 HOH A 20 520 9 HOH HOH . C 3 HOH A 21 521 12 HOH HOH . C 3 HOH A 22 522 26 HOH HOH . C 3 HOH A 23 523 17 HOH HOH . C 3 HOH A 24 524 15 HOH HOH . C 3 HOH A 25 525 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . B 2 -18.44 -17.605 16.259 1 119.91 ? P1 FBP 401 A 1 HETATM 2 O O1P FBP . . . B 2 -19.116 -18.956 16.122 1 121 ? O1P FBP 401 A 1 HETATM 3 O O2P FBP . . . B 2 -19.337 -16.674 17.042 1 118.74 ? O2P FBP 401 A 1 HETATM 4 O O3P FBP . . . B 2 -17.099 -17.762 16.944 1 118.37 ? O3P FBP 401 A 1 HETATM 5 O O1 FBP . . . B 2 -18.147 -16.978 14.803 1 64.86 ? O1 FBP 401 A 1 HETATM 6 C C1 FBP . . . B 2 -17.486 -17.794 13.875 1 59.65 ? C1 FBP 401 A 1 HETATM 7 C C2 FBP . . . B 2 -17.518 -17.216 12.471 1 56.9 ? C2 FBP 401 A 1 HETATM 8 O O2 FBP . . . B 2 -18.873 -17.036 11.985 1 55.25 ? O2 FBP 401 A 1 HETATM 9 C C3 FBP . . . B 2 -16.766 -18.189 11.577 1 52.28 ? C3 FBP 401 A 1 HETATM 10 O O3 FBP . . . B 2 -17.627 -19.14 11.011 1 43.78 ? O3 FBP 401 A 1 HETATM 11 C C4 FBP . . . B 2 -16.099 -17.299 10.551 1 49.27 ? C4 FBP 401 A 1 HETATM 12 O O4 FBP . . . B 2 -14.879 -17.844 10.103 1 41.41 ? O4 FBP 401 A 1 HETATM 13 C C5 FBP . . . B 2 -15.943 -15.969 11.278 1 53.11 ? C5 FBP 401 A 1 HETATM 14 O O5 FBP . . . B 2 -16.838 -15.972 12.379 1 55.88 ? O5 FBP 401 A 1 HETATM 15 C C6 FBP . . . B 2 -16.219 -14.785 10.364 1 51.7 ? C6 FBP 401 A 1 HETATM 16 O O6 FBP . . . B 2 -15.685 -13.636 10.964 1 52.39 ? O6 FBP 401 A 1 HETATM 17 P P2 FBP . . . B 2 -15.536 -12.238 10.191 1 47.95 ? P2 FBP 401 A 1 HETATM 18 O O4P FBP . . . B 2 -14.663 -12.407 8.966 1 37.29 ? O4P FBP 401 A 1 HETATM 19 O O5P FBP . . . B 2 -14.986 -11.255 11.191 1 50.3 ? O5P FBP 401 A 1 HETATM 20 O O6P FBP . . . B 2 -16.875 -11.741 9.723 1 48.31 ? O6P FBP 401 A 1 HETATM 21 H H11 FBP . . . B 2 -17.954 -18.778 13.868 1 71.58 ? H11 FBP 401 A 1 HETATM 22 H H12 FBP . . . B 2 -16.45 -17.923 14.185 1 71.58 ? H12 FBP 401 A 1 HETATM 23 H HO2 FBP . . . B 2 -19.008 -17.583 11.183 1 66.3 ? HO2 FBP 401 A 1 HETATM 24 H H3 FBP . . . B 2 -15.996 -18.686 12.167 1 62.73 ? H3 FBP 401 A 1 HETATM 25 H HO3 FBP . . . B 2 -17.628 -19.039 10.036 1 52.53 ? HO3 FBP 401 A 1 HETATM 26 H H4 FBP . . . B 2 -16.778 -17.162 9.709 1 59.12 ? H4 FBP 401 A 1 HETATM 27 H HO4 FBP . . . B 2 -14.143 -17.246 10.352 1 49.69 ? HO4 FBP 401 A 1 HETATM 28 H H5 FBP . . . B 2 -14.918 -15.893 11.641 1 63.73 ? H5 FBP 401 A 1 HETATM 29 H H61 FBP . . . B 2 -15.756 -14.948 9.391 1 62.04 ? H61 FBP 401 A 1 HETATM 30 H H62 FBP . . . B 2 -17.293 -14.667 10.221 1 62.04 ? H62 FBP 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #