data_5K5T
#
_model_server_result.job_id            tjOQUL59Dy6403Shhc1iuA 
_model_server_result.datetime_utc      '2025-08-31 06:40:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    5K5T 
#
_exptl.entry_id    5K5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K5T 
_cell.length_a            126.33 
_cell.length_b            150.15 
_cell.length_c            214.58 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1,5 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 11_554 -x+1/2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 63.165 0 -107.29 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 129 A CYS 129 1_555 A SG CYS 129 A CYS 129 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 A SG CYS 236 A CYS 236 1_555 A SG CYS 561 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 358 A CYS 358 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 437 A CYS 437 1_555 A SG CYS 449 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 A SG CYS 542 A CYS 542 1_555 A SG CYS 562 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 A SG CYS 546 A CYS 546 1_555 A SG CYS 565 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 A SG CYS 568 A CYS 568 1_555 A SG CYS 582 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 A SG CYS 585 A CYS 585 1_555 A SG CYS 598 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 261 A ASN 261 1_555 F C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 287 A ASN 287 1_555 G C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale3 A ND2 ASN 446 A ASN 446 1_555 H C1 NAG . A NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 A ND2 ASN 468 A ASN 468 1_555 I C1 NAG . A NAG 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale5 A ND2 ASN 488 A ASN 488 1_555 J C1 NAG . A NAG 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale6 A ND2 ASN 541 A ASN 541 1_555 K C1 NAG . A NAG 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale7 A ND2 ASN 594 A ASN 594 1_555 L C1 NAG . A NAG 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A OG1 THR 100 A THR 100 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc2 A OG1 THR 145 A THR 145 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 320 n n 
S O2 SO4 doub 321 n n 
S O3 SO4 sing 322 n n 
S O4 SO4 sing 323 n n 
#
_atom_sites.entry_id                     5K5T 
_atom_sites.fract_transf_matrix[1][1]    0.007916 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00666 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 701 1 CA CA . 
C 3 SO4 A 1 702 1 SO4 SO4 . 
D 3 SO4 A 1 703 1 SO4 SO4 . 
E 3 SO4 A 1 704 1 SO4 SO4 . 
F 4 NAG A 1 705 501 NAG NAG . 
G 4 NAG A 1 706 502 NAG NAG . 
H 4 NAG A 1 707 503 NAG NAG . 
I 4 NAG A 1 708 504 NAG NAG . 
J 4 NAG A 1 709 505 NAG NAG . 
K 4 NAG A 1 710 506 NAG NAG . 
L 4 NAG A 1 711 507 NAG NAG . 
M 5 HOH A 1 801 36 HOH HOH . 
M 5 HOH A 2 802 30 HOH HOH . 
M 5 HOH A 3 803 26 HOH HOH . 
M 5 HOH A 4 804 42 HOH HOH . 
M 5 HOH A 5 805 41 HOH HOH . 
M 5 HOH A 6 806 40 HOH HOH . 
M 5 HOH A 7 807 3 HOH HOH . 
M 5 HOH A 8 808 28 HOH HOH . 
M 5 HOH A 9 809 21 HOH HOH . 
M 5 HOH A 10 810 34 HOH HOH . 
M 5 HOH A 11 811 23 HOH HOH . 
M 5 HOH A 12 812 31 HOH HOH . 
M 5 HOH A 13 813 16 HOH HOH . 
M 5 HOH A 14 814 19 HOH HOH . 
M 5 HOH A 15 815 38 HOH HOH . 
M 5 HOH A 16 816 11 HOH HOH . 
M 5 HOH A 17 817 32 HOH HOH . 
M 5 HOH A 18 818 37 HOH HOH . 
M 5 HOH A 19 819 12 HOH HOH . 
M 5 HOH A 20 820 39 HOH HOH . 
M 5 HOH A 21 821 18 HOH HOH . 
M 5 HOH A 22 822 27 HOH HOH . 
M 5 HOH A 23 823 6 HOH HOH . 
M 5 HOH A 24 824 2 HOH HOH . 
M 5 HOH A 25 825 4 HOH HOH . 
M 5 HOH A 26 826 1 HOH HOH . 
M 5 HOH A 27 827 33 HOH HOH . 
M 5 HOH A 28 828 15 HOH HOH . 
M 5 HOH A 29 829 24 HOH HOH . 
M 5 HOH A 30 830 14 HOH HOH . 
M 5 HOH A 31 831 43 HOH HOH . 
M 5 HOH A 32 832 9 HOH HOH . 
M 5 HOH A 33 833 35 HOH HOH . 
M 5 HOH A 34 834 5 HOH HOH . 
M 5 HOH A 35 835 7 HOH HOH . 
M 5 HOH A 36 836 29 HOH HOH . 
M 5 HOH A 37 837 22 HOH HOH . 
M 5 HOH A 38 838 13 HOH HOH . 
M 5 HOH A 39 839 17 HOH HOH . 
M 5 HOH A 40 840 10 HOH HOH . 
M 5 HOH A 41 841 8 HOH HOH . 
M 5 HOH A 42 842 25 HOH HOH . 
M 5 HOH A 43 843 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . C 3 11.545 -23.074 -48.735 1 83.27 ? S SO4 702 A 1 
HETATM 2 O O1 SO4 . . . C 3 11.102 -23.635 -50.011 1 81.34 ? O1 SO4 702 A 1 
HETATM 3 O O2 SO4 . . . C 3 10.438 -23.019 -47.785 1 84.58 ? O2 SO4 702 A 1 
HETATM 4 O O3 SO4 . . . C 3 12.568 -23.937 -48.135 1 81.43 ? O3 SO4 702 A 1 
HETATM 5 O O4 SO4 . . . C 3 12.047 -21.724 -48.966 1 82.89 ? O4 SO4 702 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#